Rmu_sc0006344.1_g000009

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006344.1
Physical Location & Seq
Forward (+)
37502 .. 39733
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006344.1_g000009.1.cds

Sequence Viewer

Length: 1797 bp
atggtttcaggcccacttgttggagacgaagccagcaacagattctattcccggaacacccagaatcccaaccatgtcatccgccactcgtcggagcagcagcggcagagcttgatgcagcagttccgaggcgaaacggcgtcggttgactcctccaacaatgggctcgccgacccgggcaatgggccacgtgggtattcaaaggttggggacaaggtgaggatttgcttgaactccaagactgacattaagggaatcaagtggaagctgatgggtgagcttgagcaagtgaggcgcttggtgaggaatctcgaagctaaggaggctcagtttgctgaagggtatggtgtttctcagctttcagatactaatttggtagataataatgttagaactacaatgccatttaggggtttaagtgtttgtacggcggagaatgagaataagggtggtgagtttgcggaggagaaggagaagaagaagaagaagaagaagactccgaagggagatcagagttctaggaattcaaagttacctccttctgggggtaacaagaataggaagagtgaagttgggctgttgttggggtcggataagaattcgagtaaattgttgaagagttgtagtactttgcttgagaaattgatgaagcataagcacggctgggtgtttaataagccggtagatgctaaggggcttggcctgcatgattactataagattgttaagcatccgatggatttggggacggtgaagagtaggctggacaagaattggtataagacggctgctgagtttgcagaggatgtgagacttacattcaataatgccatgttgtataacccgaaagagcaggatgttcatgtgatggcggccctattgttgaagttgtttgaagagaaatgggtggctatagaggatcagtataaacttaataggagagttgaaatgggtagtgattcagaattgccgacccctgtttcaagaaatgctgaagctcctgctcagaataatattaataggagggttgaaataggtaataattcagaattaccaacccctatttcaagaaaggttcgggctccaggacataatattaataggagaattggaatgggtaataattcagaattgcctacccctataacaagaaaggttcaggctcctcctccttctcctccgccattggagatgaggactctggatagagcagaatctatgacaaagcctgctgatcccaagttgaaacctgcaagtgttggtcatccaggtagaaagccggttccaaagaaaccaaaagctcgggaccctgacaaaagggatatgaatatgcaggagaagcagaagctcagcacagaccttcaggctttgccttctgagaaactagctaatgttgtccagattgttaaaaagagaagtcaagggattttacaacaagacgatgagattgaattggacattggcagtgttgatcctgaaacactttgggaactggatagatttgtgactaattataaaaagagcttgaccaaaaataagagaaaagctgaacttgctcctcaatcagttgaagaatctgactatgctatgcatgagaatgtggcacaagccactgcagaggcacaacatgaggccatagcagttgaatacaacgacaatgcatcgtccccagttcaaagagaagagcgaggtgagaatgtgagtggatcaagtagttccagcagtgattctggatcctcttcaagtgattcggagaaaggaagttcctctggaagtggatcatattcaaatcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

598

Amino Acids

66.42

Weight (kDa)

9.35

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1515
Acc36I ACCTGC 1 cut(s) 1258
AccB7I CCANNNNNTGG 1 cut(s) 20
AciI CCGC 6 cut(s) 82, 103, 431, 461, 872, 1181
AclWI GGATC 7 cut(s) 927, 1229, 1466, 1714, 1728, 1741, 1786
AcsI RAATTY 2 cut(s) 523, 598
AcuI CTGAAG 3 cut(s) 357, 1014, 1346
AcvI CACGTG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 2 cut(s) 427, 628
AfiI CCNNNNNNNGG 7 cut(s) 20, 91, 162, 182, 410, 542, 545
AjnI CCWGG 2 cut(s) 1084, 1267
AjuI GAANNNNNNNTTGG 4 cut(s) 1048, 1080, 1443, 1475
Alw26I GTCTC 2 cut(s) 18, 805
AlwI GGATC 7 cut(s) 927, 1229, 1466, 1714, 1728, 1741, 1786
Ama87I CYCGRG 2 cut(s) 175, 1302
AoxI GGCC 5 cut(s) 10, 185, 700, 873, 1632
ApeKI GCWGC 4 cut(s) 97, 100, 118, 788
ApoI RAATTY 2 cut(s) 523, 598
AseI ATTAAT 2 cut(s) 1017, 1098
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 4 cut(s) 11, 185, 874, 1306
AsuC2I CCSGG 3 cut(s) 52, 176, 177
AsuHPI GGTGA 6 cut(s) 229, 287, 313, 464, 763, 1703
AvaI CYCGRG 2 cut(s) 175, 1302
AvaII GGWCC 1 cut(s) 1306
BamHI GGATCC 1 cut(s) 1733
BanII GRGCYC 2 cut(s) 168, 1084
BbrPI CACGTG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 4 cut(s) 109, 112, 130, 775
BccI CCATC 3 cut(s) 265, 730, 862
BceAI ACGGC 4 cut(s) 153, 444, 676, 801
BciT130I CCWGG 2 cut(s) 1086, 1269
BcnI CCSGG 3 cut(s) 52, 176, 177
BcoDI GTCTC 2 cut(s) 18, 805
BfaI CTAG 2 cut(s) 519, 1385
BfmI CTRYAG 2 cut(s) 912, 1614
BfoI RGCGCY 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 1258
BisI GCNGC 6 cut(s) 98, 101, 104, 119, 789, 873
BlpI GCTNAGC 1 cut(s) 1349
BlsI GCNGC 6 cut(s) 99, 102, 105, 120, 790, 874
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 5 cut(s) 52, 176, 177, 1086, 1269
Bme18I GGWCC 1 cut(s) 1306
BmeT110I CYCGRG 2 cut(s) 175, 1302
BmgT120I GGNCC 4 cut(s) 11, 185, 874, 1306
BmiI GGNNCC 6 cut(s) 1083, 1164, 1284, 1307, 1308, 1735
BmrFI CCNGG 5 cut(s) 52, 176, 177, 1086, 1269
BmrI ACTGGG 1 cut(s) 1664
BmsI GCATC 4 cut(s) 105, 676, 739, 1670
BmuI ACTGGG 1 cut(s) 1664
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 1068
Bpu10I CCTNAGC 2 cut(s) 318, 690
Bpu1102I GCTNAGC 1 cut(s) 1349
BpuEI CTTGAG 2 cut(s) 302, 656
BpuMI CCSGG 3 cut(s) 52, 176, 177
BsaAI YACGTR 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 127, 175
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 91, 162, 182, 410, 542, 545
Bse118I RCCGGY 2 cut(s) 679, 1279
Bse1I ACTGG 2 cut(s) 1497, 1670
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 2 cut(s) 1086, 1269
BseDI CCNNGG 2 cut(s) 127, 175
BseGI GGATG 5 cut(s) 78, 730, 811, 862, 1264
BseLI CCNNNNNNNGG 7 cut(s) 20, 91, 162, 182, 410, 542, 545
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 6 cut(s) 341, 368, 783, 1019, 1363, 1368
BseNI ACTGG 2 cut(s) 1497, 1670
BseRI GAGGAG 6 cut(s) 142, 479, 1155, 1158, 1167, 1548
BseXI GCAGC 4 cut(s) 109, 112, 130, 775
BseYI CCCAGC 1 cut(s) 663
BshFI GGCC 5 cut(s) 12, 187, 702, 875, 1634
BsiHKCI CYCGRG 2 cut(s) 175, 1302
BsiSI CCGG 4 cut(s) 52, 176, 680, 1280
BslFI GGGAC 4 cut(s) 224, 760, 1319, 1651
BslI CCNNNNNNNGG 7 cut(s) 20, 91, 162, 182, 410, 542, 545
BsmAI GTCTC 2 cut(s) 18, 805
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 4 cut(s) 224, 760, 1319, 1651
BsnI GGCC 5 cut(s) 12, 187, 702, 875, 1634
BsoBI CYCGRG 2 cut(s) 175, 1302
Bsp1286I GDGCHC 2 cut(s) 168, 1084
Bsp143I GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
Bsp1720I GCTNAGC 1 cut(s) 1349
BspACI CCGC 6 cut(s) 82, 103, 431, 461, 872, 1181
BspANI GGCC 5 cut(s) 12, 187, 702, 875, 1634
BspCNI CTCAG 6 cut(s) 340, 367, 784, 1018, 1362, 1369
BspLI GGNNCC 6 cut(s) 1083, 1164, 1284, 1307, 1308, 1735
BspMAI CTGCAG 1 cut(s) 1618
BspMI ACCTGC 1 cut(s) 1258
BspPI GGATC 7 cut(s) 927, 1229, 1466, 1714, 1728, 1741, 1786
BspQI GCTCTTC 1 cut(s) 1677
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 2 cut(s) 679, 1279
BsrI ACTGG 2 cut(s) 1497, 1670
BssAI RCCGGY 2 cut(s) 679, 1279
BssECI CCNNGG 2 cut(s) 127, 175
BssMI GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 1086, 1269
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 6 cut(s) 557, 611, 749, 891, 1677, 1744
BstACI GRCGYC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 4 cut(s) 34, 168, 704, 1230
BstDEI CTNAG 8 cut(s) 318, 327, 354, 690, 792, 1005, 1349, 1377
BstF5I GGATG 5 cut(s) 78, 730, 811, 862, 1264
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 7 cut(s) 511, 922, 1237, 1474, 1709, 1736, 1781
BstMAI GTCTC 2 cut(s) 18, 805
BstMBI GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
BstMWI GCNNNNNNNGC 8 cut(s) 103, 292, 323, 332, 703, 797, 1339, 1553
BstNI CCWGG 2 cut(s) 1086, 1269
BstSCI CCNGG 5 cut(s) 50, 174, 175, 1084, 1267
BstSFI CTRYAG 2 cut(s) 912, 1614
BstV1I GCAGC 4 cut(s) 109, 112, 130, 775
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 1733
BstYI RGATCY 1 cut(s) 1733
BsuRI GGCC 5 cut(s) 12, 187, 702, 875, 1634
BtsCI GGATG 5 cut(s) 78, 730, 811, 862, 1264
BtsI GCAGTG 3 cut(s) 1471, 1611, 1729
BtsIMutI CAGTG 3 cut(s) 1471, 1611, 1729
BveI ACCTGC 1 cut(s) 1258
Cac8I GCNNGC 4 cut(s) 34, 168, 704, 1230
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 2 cut(s) 679, 1279
Cfr13I GGNCC 4 cut(s) 11, 185, 874, 1306
Cfr9I CCCGGG 1 cut(s) 175
CseI GACGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 426, 627
CviAII CATG 6 cut(s) 74, 707, 832, 863, 1592, 1628
CviQI GTAC 2 cut(s) 426, 627
DdeI CTNAG 8 cut(s) 318, 327, 354, 690, 792, 1005, 1349, 1377
DpnI GATC 7 cut(s) 510, 921, 1236, 1473, 1708, 1735, 1780
DpnII GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
Eam1104I CTCTTC 6 cut(s) 557, 611, 749, 891, 1677, 1744
EarI CTCTTC 6 cut(s) 557, 611, 749, 891, 1677, 1744
EciI GGCGGA 3 cut(s) 71, 446, 1170
Eco24I GRGCYC 2 cut(s) 168, 1084
Eco47I GGWCC 1 cut(s) 1306
Eco57I CTGAAG 3 cut(s) 357, 1014, 1346
Eco72I CACGTG 1 cut(s) 191
Eco88I CYCGRG 2 cut(s) 175, 1302
EcoO109I RGGNCCY 1 cut(s) 1306
EcoRI GAATTC 2 cut(s) 523, 598
EcoRII CCWGG 2 cut(s) 1084, 1267
EcoT22I ATGCAT 2 cut(s) 1593, 1663
EcoT38I GRGCYC 2 cut(s) 168, 1084
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 6 cut(s) 77, 710, 835, 866, 1595, 1631
FalI AAGNNNNNCTT 2 cut(s) 1536, 1568
FaqI GGGAC 4 cut(s) 224, 760, 1319, 1651
FatI CATG 6 cut(s) 73, 706, 831, 862, 1591, 1627
Fnu4HI GCNGC 6 cut(s) 98, 101, 104, 119, 789, 873
FokI GGATG 5 cut(s) 65, 717, 818, 869, 1251
FriOI GRGCYC 2 cut(s) 168, 1084
Fsp4HI GCNGC 6 cut(s) 98, 101, 104, 119, 789, 873
FspBI CTAG 2 cut(s) 519, 1385
GlaI GCGC 1 cut(s) 296
GluI GCNGC 6 cut(s) 98, 101, 104, 119, 789, 873
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 1068
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 5 cut(s) 12, 187, 702, 875, 1634
HapII CCGG 4 cut(s) 52, 176, 680, 1280
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 6 cut(s) 77, 710, 835, 866, 1595, 1631
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 4 cut(s) 52, 176, 680, 1280
HphI GGTGA 6 cut(s) 229, 287, 313, 464, 763, 1703
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 9 cut(s) 311, 984, 1068, 1202, 1304, 1399, 1475, 1731, 1770
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 94, 145
HpyAV CCTTC 7 cut(s) 332, 463, 496, 549, 1182, 1370, 1383
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 8 cut(s) 118, 706, 800, 1253, 1333, 1591, 1616, 1661
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 292, 323, 332, 703, 797, 1339, 1553
HpyF3I CTNAG 8 cut(s) 318, 327, 354, 690, 792, 1005, 1349, 1377
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 6 cut(s) 77, 710, 835, 866, 1595, 1631
HspAI GCGC 1 cut(s) 295
KflI GGGWCCC 1 cut(s) 1306
Kzo9I GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
LguI GCTCTTC 1 cut(s) 1677
LmnI GCTCC 5 cut(s) 94, 1003, 1087, 1168, 1561
Lsp1109I GCAGC 4 cut(s) 109, 112, 130, 775
LweI GCATC 4 cut(s) 105, 676, 739, 1670
MaeI CTAG 2 cut(s) 519, 1385
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 3 cut(s) 531, 548, 1504
MalI GATC 7 cut(s) 510, 921, 1236, 1473, 1708, 1735, 1780
MboI GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
MflI RGATCY 1 cut(s) 1733
MhlI GDGCHC 2 cut(s) 168, 1084
MlyI GAGTC 3 cut(s) 143, 490, 1192
MmeI TCCRAC 3 cut(s) 72, 180, 570
Mph1103I ATGCAT 2 cut(s) 1593, 1663
MseI TTAA 8 cut(s) 249, 416, 672, 726, 933, 1017, 1098, 1407
MslI CAYNNNNRTG 1 cut(s) 1596
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 4 cut(s) 52, 176, 680, 1280
MspR9I CCNGG 5 cut(s) 52, 176, 177, 1086, 1269
MvaI CCWGG 2 cut(s) 1086, 1269
MwoI GCNNNNNNNGC 8 cut(s) 103, 292, 323, 332, 703, 797, 1339, 1553
NciI CCSGG 3 cut(s) 52, 176, 177
NdeII GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
NlaIII CATG 6 cut(s) 77, 710, 835, 866, 1595, 1631
NlaIV GGNNCC 6 cut(s) 1083, 1164, 1284, 1307, 1308, 1735
NmuCI GTSAC 1 cut(s) 1504
NsiI ATGCAT 2 cut(s) 1593, 1663
PciSI GCTCTTC 1 cut(s) 1677
PfeI GAWTC 9 cut(s) 42, 64, 255, 307, 959, 1214, 1574, 1727, 1748
PflMI CCANNNNNTGG 1 cut(s) 20
PfoI TCCNGGA 2 cut(s) 50, 1084
PkrI GCNGC 6 cut(s) 99, 102, 105, 120, 790, 874
PleI GAGTC 3 cut(s) 143, 490, 1192
PmaCI CACGTG 1 cut(s) 191
PmlI CACGTG 1 cut(s) 191
PpsI GAGTC 3 cut(s) 143, 490, 1192
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 1306
PshBI ATTAAT 2 cut(s) 1017, 1098
PsiI TTATAA 1 cut(s) 1515
Psp5II RGGWCCY 1 cut(s) 1306
Psp6I CCWGG 2 cut(s) 1084, 1267
PspCI CACGTG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 2 cut(s) 1084, 1267
PspN4I GGNNCC 6 cut(s) 1083, 1164, 1284, 1307, 1308, 1735
PspPI GGNCC 4 cut(s) 11, 185, 874, 1306
PspPPI RGGWCCY 1 cut(s) 1306
PstI CTGCAG 1 cut(s) 1618
PsuI RGATCY 1 cut(s) 1733
RsaI GTAC 2 cut(s) 427, 628
RsaNI GTAC 2 cut(s) 426, 627
RseI CAYNNNNRTG 1 cut(s) 1596
SapI GCTCTTC 1 cut(s) 1677
SaqAI TTAA 8 cut(s) 249, 416, 672, 726, 933, 1017, 1098, 1407
SatI GCNGC 6 cut(s) 98, 101, 104, 119, 789, 873
Sau3AI GATC 7 cut(s) 508, 919, 1234, 1471, 1706, 1733, 1778
Sau96I GGNCC 4 cut(s) 11, 185, 874, 1306
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 3 cut(s) 143, 490, 1192
ScrFI CCNGG 5 cut(s) 52, 176, 177, 1086, 1269
SduI GDGCHC 2 cut(s) 168, 1084
SfaNI GCATC 4 cut(s) 105, 676, 739, 1670
SfcI CTRYAG 2 cut(s) 912, 1614
SinI GGWCC 1 cut(s) 1306
SmaI CCCGGG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 1596
SmlI CTYRAG 2 cut(s) 281, 635
SmoI CTYRAG 2 cut(s) 281, 635
SsiI CCGC 6 cut(s) 82, 103, 431, 461, 872, 1181
SspI AATATT 2 cut(s) 1015, 1096
SspMI CTAG 2 cut(s) 519, 1385
StyD4I CCNGG 5 cut(s) 50, 174, 175, 1084, 1267
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 312, 602
TatI WGTACW 1 cut(s) 626
TauI GCSGC 2 cut(s) 106, 875
TfiI GAWTC 9 cut(s) 42, 64, 255, 307, 959, 1214, 1574, 1727, 1748
Tru1I TTAA 8 cut(s) 249, 416, 672, 726, 933, 1017, 1098, 1407
Tru9I TTAA 8 cut(s) 249, 416, 672, 726, 933, 1017, 1098, 1407
TscAI CASTG 3 cut(s) 1471, 1618, 1729
TseFI GTSAC 1 cut(s) 1504
TseI GCWGC 4 cut(s) 97, 100, 118, 788
Tsp45I GTSAC 1 cut(s) 1504
TspDTI ATGAA 3 cut(s) 662, 851, 1340
TspMI CCCGGG 1 cut(s) 175
TspRI CASTG 3 cut(s) 1471, 1618, 1729
Van91I CCANNNNNTGG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 1306
VspI ATTAAT 2 cut(s) 1017, 1098
XapI RAATTY 2 cut(s) 523, 598
XmaI CCCGGG 1 cut(s) 175
XspI CTAG 2 cut(s) 519, 1385
ZrmI AGTACT 1 cut(s) 628
Zsp2I ATGCAT 2 cut(s) 1593, 1663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.