Rmu_sc0009888.1_g000002

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009888.1
Physical Location & Seq
Reverse (-)
4483 .. 7242
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009888.1_g000002.1.cds

Sequence Viewer

Length: 1713 bp
atggcctttgaacctcaccagcactattgcttatgccagttccgaggcgaaacggcgtcggttgactcctccaacaatgggctcgccgacccgggcaatgggccacgtgggtattcaaaggttggggacaaggtgaggatttgcttgaactccaagactgacattaagggaatcaagtggaagctgatgggtgagcttgagcaagtgaggcgcttggtgaggaatctcgaagctaaggaggctcagtttgctgaagggtatggtgtttctcagctttcagatactaatttggtagataataatgttagaactacaatgccatttaggggtttaagtgtttgtacggcggagaatgagaataagggtggtgagtttgcggaggagaaggagaagaagaagaagaagaagaagactccgaagggagatcagagttctaggaattcaaagttacctccttctgggggtaacaagaataggaagagtgaagttgggctgttgttggggtcggataagaattcgagtaaattgttgaagagttgtagtactttgcttgagaaattgatgaagcataagcacggctgggtgtttaataagccggtagatgctaaggggcttggcctgcatgattactataagattgttaagcatccgatggatttggggacggtgaagagtaggctggacaagaattggtataagacggctgctgagtttgcagaggatgtgagacttacattcaataatgccatgttgtataacccgaaagagcaggatgttcatgtgatggcggccctattgttgaagttgtttgaagagaaatgggtggctatagaggatcagtataaacttaataggagagttgaaatgggtagtgattcagaattgccgacccctgtttcaagaaatgctgaagctcctgctcagaataatattaataggagggttgaaataggtaataattcagaattaccaacccctatttcaagaaaggttcgggctccaggacataatattaataggagaattggaatgggtaataattcagaattgcctacccctataacaagaaaggttcaggctcctcctccttctcctccgccattggagatgaggactctggatagagcagaatctatgacaaagcctgctgatcccaagttgaaacctgcaagtgttggtcatccaggtagaaagccggttccaaagaaaccaaaagctcgggaccctgacaaaagggatatgaatatgcaggagaagcagaagctcagcacagaccttcaggctttgccttctgagaaactagctaatgttgtccagattgttaaaaagagaagtcaagggattttacaacaagacgatgagattgaattggacattggcagtgttgatcctgaaacactttgggaactggatagatttgtgactaattataaaaagagcttgaccaaaaataagagaaaagctgaacttgctcctcaatcagttgaagaatctgactatgctatgcatgagaatgtggcacaagccactgcagaggcacaacatgaggccatagcagttgaatacaacgacaatgcatcttccccagttcaaagagaagagcgaggtgagaatgtgagtggatcaagtagttccagcagtgattctggatcctcttcaagtgattcggagaaaggaagttcctctggaagtggatcatattcaaatcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

570

Amino Acids

63.3

Weight (kDa)

9.21

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1431
Acc36I ACCTGC 1 cut(s) 1174
AciI CCGC 4 cut(s) 347, 377, 788, 1097
AclWI GGATC 7 cut(s) 843, 1145, 1382, 1630, 1644, 1657, 1702
AcsI RAATTY 2 cut(s) 439, 514
AcuI CTGAAG 3 cut(s) 273, 930, 1262
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 343, 544
AfiI CCNNNNNNNGG 5 cut(s) 78, 98, 326, 458, 461
AjnI CCWGG 2 cut(s) 1000, 1183
AjuI GAANNNNNNNTTGG 4 cut(s) 964, 996, 1359, 1391
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 7 cut(s) 843, 1145, 1382, 1630, 1644, 1657, 1702
Ama87I CYCGRG 2 cut(s) 91, 1218
AoxI GGCC 5 cut(s) 3, 101, 616, 789, 1548
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 2 cut(s) 439, 514
AseI ATTAAT 2 cut(s) 933, 1014
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 3 cut(s) 101, 790, 1222
AsuC2I CCSGG 2 cut(s) 92, 93
AsuHPI GGTGA 7 cut(s) 8, 145, 203, 229, 380, 679, 1619
AvaI CYCGRG 2 cut(s) 91, 1218
AvaII GGWCC 1 cut(s) 1222
BamHI GGATCC 1 cut(s) 1649
BanII GRGCYC 2 cut(s) 84, 1000
BbrPI CACGTG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 691
BccI CCATC 3 cut(s) 181, 646, 778
BceAI ACGGC 4 cut(s) 69, 360, 592, 717
BciT130I CCWGG 2 cut(s) 1002, 1185
BcnI CCSGG 2 cut(s) 92, 93
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 2 cut(s) 435, 1301
BfmI CTRYAG 2 cut(s) 828, 1530
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 1174
BisI GCNGC 2 cut(s) 705, 789
BlpI GCTNAGC 1 cut(s) 1265
BlsI GCNGC 2 cut(s) 706, 790
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 4 cut(s) 92, 93, 1002, 1185
Bme18I GGWCC 1 cut(s) 1222
BmeT110I CYCGRG 2 cut(s) 91, 1218
BmgT120I GGNCC 3 cut(s) 101, 790, 1222
BmiI GGNNCC 6 cut(s) 999, 1080, 1200, 1223, 1224, 1651
BmrFI CCNGG 4 cut(s) 92, 93, 1002, 1185
BmrI ACTGGG 1 cut(s) 1580
BmsI GCATC 3 cut(s) 592, 655, 1586
BmuI ACTGGG 1 cut(s) 1580
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 984
Bpu10I CCTNAGC 2 cut(s) 234, 606
Bpu1102I GCTNAGC 1 cut(s) 1265
BpuEI CTTGAG 2 cut(s) 218, 572
BpuMI CCSGG 2 cut(s) 92, 93
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 43, 91
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 98, 326, 458, 461
Bse118I RCCGGY 2 cut(s) 595, 1195
Bse1I ACTGG 3 cut(s) 37, 1413, 1586
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 1002, 1185
BseDI CCNNGG 2 cut(s) 43, 91
BseGI GGATG 4 cut(s) 646, 727, 778, 1180
BseLI CCNNNNNNNGG 5 cut(s) 78, 98, 326, 458, 461
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 6 cut(s) 257, 284, 699, 935, 1279, 1284
BseNI ACTGG 3 cut(s) 37, 1413, 1586
BseRI GAGGAG 6 cut(s) 58, 395, 1071, 1074, 1083, 1464
BseXI GCAGC 1 cut(s) 691
BseYI CCCAGC 1 cut(s) 579
BshFI GGCC 5 cut(s) 5, 103, 618, 791, 1550
BsiHKCI CYCGRG 2 cut(s) 91, 1218
BsiSI CCGG 3 cut(s) 92, 596, 1196
BslFI GGGAC 3 cut(s) 140, 676, 1235
BslI CCNNNNNNNGG 5 cut(s) 78, 98, 326, 458, 461
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 3 cut(s) 140, 676, 1235
BsnI GGCC 5 cut(s) 5, 103, 618, 791, 1550
BsoBI CYCGRG 2 cut(s) 91, 1218
Bsp1286I GDGCHC 2 cut(s) 84, 1000
Bsp143I GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
Bsp1720I GCTNAGC 1 cut(s) 1265
BspACI CCGC 4 cut(s) 347, 377, 788, 1097
BspANI GGCC 5 cut(s) 5, 103, 618, 791, 1550
BspCNI CTCAG 6 cut(s) 256, 283, 700, 934, 1278, 1285
BspLI GGNNCC 6 cut(s) 999, 1080, 1200, 1223, 1224, 1651
BspMAI CTGCAG 1 cut(s) 1534
BspMI ACCTGC 1 cut(s) 1174
BspPI GGATC 7 cut(s) 843, 1145, 1382, 1630, 1644, 1657, 1702
BspQI GCTCTTC 1 cut(s) 1593
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 2 cut(s) 595, 1195
BsrI ACTGG 3 cut(s) 37, 1413, 1586
BssAI RCCGGY 2 cut(s) 595, 1195
BssECI CCNNGG 2 cut(s) 43, 91
BssMI GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 1002, 1185
Bst4CI ACNGT 1 cut(s) 667
Bst6I CTCTTC 6 cut(s) 473, 527, 665, 807, 1593, 1660
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 84, 620, 1146
BstDEI CTNAG 8 cut(s) 234, 243, 270, 606, 708, 921, 1265, 1293
BstF5I GGATG 4 cut(s) 646, 727, 778, 1180
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 7 cut(s) 427, 838, 1153, 1390, 1625, 1652, 1697
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
BstMWI GCNNNNNNNGC 7 cut(s) 208, 239, 248, 619, 713, 1255, 1469
BstNI CCWGG 2 cut(s) 1002, 1185
BstSCI CCNGG 4 cut(s) 90, 91, 1000, 1183
BstSFI CTRYAG 2 cut(s) 828, 1530
BstV1I GCAGC 1 cut(s) 691
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 1649
BstYI RGATCY 1 cut(s) 1649
BsuRI GGCC 5 cut(s) 5, 103, 618, 791, 1550
BtsCI GGATG 4 cut(s) 646, 727, 778, 1180
BtsI GCAGTG 3 cut(s) 1387, 1527, 1645
BtsIMutI CAGTG 3 cut(s) 1387, 1527, 1645
BveI ACCTGC 1 cut(s) 1174
Cac8I GCNNGC 3 cut(s) 84, 620, 1146
CfoI GCGC 1 cut(s) 213
Cfr10I RCCGGY 2 cut(s) 595, 1195
Cfr13I GGNCC 3 cut(s) 101, 790, 1222
Cfr9I CCCGGG 1 cut(s) 91
CseI GACGC 1 cut(s) 45
Csp6I GTAC 2 cut(s) 342, 543
CviAII CATG 5 cut(s) 623, 748, 779, 1508, 1544
CviQI GTAC 2 cut(s) 342, 543
DdeI CTNAG 8 cut(s) 234, 243, 270, 606, 708, 921, 1265, 1293
DpnI GATC 7 cut(s) 426, 837, 1152, 1389, 1624, 1651, 1696
DpnII GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
Eam1104I CTCTTC 6 cut(s) 473, 527, 665, 807, 1593, 1660
EarI CTCTTC 6 cut(s) 473, 527, 665, 807, 1593, 1660
EciI GGCGGA 2 cut(s) 362, 1086
Eco24I GRGCYC 2 cut(s) 84, 1000
Eco47I GGWCC 1 cut(s) 1222
Eco57I CTGAAG 3 cut(s) 273, 930, 1262
Eco72I CACGTG 1 cut(s) 107
Eco88I CYCGRG 2 cut(s) 91, 1218
EcoO109I RGGNCCY 1 cut(s) 1222
EcoRI GAATTC 2 cut(s) 439, 514
EcoRII CCWGG 2 cut(s) 1000, 1183
EcoT22I ATGCAT 2 cut(s) 1509, 1579
EcoT38I GRGCYC 2 cut(s) 84, 1000
FaeI CATG 5 cut(s) 626, 751, 782, 1511, 1547
FalI AAGNNNNNCTT 2 cut(s) 1452, 1484
FaqI GGGAC 3 cut(s) 140, 676, 1235
FatI CATG 5 cut(s) 622, 747, 778, 1507, 1543
Fnu4HI GCNGC 2 cut(s) 705, 789
FokI GGATG 4 cut(s) 633, 734, 785, 1167
FriOI GRGCYC 2 cut(s) 84, 1000
Fsp4HI GCNGC 2 cut(s) 705, 789
FspBI CTAG 2 cut(s) 435, 1301
GlaI GCGC 1 cut(s) 212
GluI GCNGC 2 cut(s) 705, 789
GsaI CCCAGC 1 cut(s) 583
GsuI CTGGAG 1 cut(s) 984
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 5 cut(s) 5, 103, 618, 791, 1550
HapII CCGG 3 cut(s) 92, 596, 1196
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 5 cut(s) 626, 751, 782, 1511, 1547
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HpaII CCGG 3 cut(s) 92, 596, 1196
HphI GGTGA 7 cut(s) 8, 145, 203, 229, 380, 679, 1619
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 9 cut(s) 227, 900, 984, 1118, 1220, 1315, 1391, 1647, 1686
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 7 cut(s) 248, 379, 412, 465, 1098, 1286, 1299
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 7 cut(s) 622, 716, 1169, 1249, 1507, 1532, 1577
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 239, 248, 619, 713, 1255, 1469
HpyF3I CTNAG 8 cut(s) 234, 243, 270, 606, 708, 921, 1265, 1293
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 5 cut(s) 626, 751, 782, 1511, 1547
HspAI GCGC 1 cut(s) 211
KflI GGGWCCC 1 cut(s) 1222
Kzo9I GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
LguI GCTCTTC 1 cut(s) 1593
LmnI GCTCC 4 cut(s) 919, 1003, 1084, 1477
Lsp1109I GCAGC 1 cut(s) 691
LweI GCATC 3 cut(s) 592, 655, 1586
MaeI CTAG 2 cut(s) 435, 1301
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 447, 464, 1420
MalI GATC 7 cut(s) 426, 837, 1152, 1389, 1624, 1651, 1696
MboI GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
MflI RGATCY 1 cut(s) 1649
MhlI GDGCHC 2 cut(s) 84, 1000
MlyI GAGTC 3 cut(s) 59, 406, 1108
MmeI TCCRAC 2 cut(s) 96, 486
Mph1103I ATGCAT 2 cut(s) 1509, 1579
MseI TTAA 8 cut(s) 165, 332, 588, 642, 849, 933, 1014, 1323
MslI CAYNNNNRTG 1 cut(s) 1512
MspI CCGG 3 cut(s) 92, 596, 1196
MspR9I CCNGG 4 cut(s) 92, 93, 1002, 1185
MvaI CCWGG 2 cut(s) 1002, 1185
MwoI GCNNNNNNNGC 7 cut(s) 208, 239, 248, 619, 713, 1255, 1469
NciI CCSGG 2 cut(s) 92, 93
NdeII GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
NlaIII CATG 5 cut(s) 626, 751, 782, 1511, 1547
NlaIV GGNNCC 6 cut(s) 999, 1080, 1200, 1223, 1224, 1651
NmuCI GTSAC 1 cut(s) 1420
NsiI ATGCAT 2 cut(s) 1509, 1579
PciSI GCTCTTC 1 cut(s) 1593
PfeI GAWTC 7 cut(s) 171, 223, 875, 1130, 1490, 1643, 1664
PfoI TCCNGGA 1 cut(s) 1000
PkrI GCNGC 2 cut(s) 706, 790
PleI GAGTC 3 cut(s) 59, 406, 1108
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
PpsI GAGTC 3 cut(s) 59, 406, 1108
Ppu21I YACGTR 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 1222
PshBI ATTAAT 2 cut(s) 933, 1014
PsiI TTATAA 1 cut(s) 1431
Psp5II RGGWCCY 1 cut(s) 1222
Psp6I CCWGG 2 cut(s) 1000, 1183
PspCI CACGTG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 579
PspGI CCWGG 2 cut(s) 1000, 1183
PspN4I GGNNCC 6 cut(s) 999, 1080, 1200, 1223, 1224, 1651
PspPI GGNCC 3 cut(s) 101, 790, 1222
PspPPI RGGWCCY 1 cut(s) 1222
PstI CTGCAG 1 cut(s) 1534
PsuI RGATCY 1 cut(s) 1649
RsaI GTAC 2 cut(s) 343, 544
RsaNI GTAC 2 cut(s) 342, 543
RseI CAYNNNNRTG 1 cut(s) 1512
SapI GCTCTTC 1 cut(s) 1593
SaqAI TTAA 8 cut(s) 165, 332, 588, 642, 849, 933, 1014, 1323
SatI GCNGC 2 cut(s) 705, 789
Sau3AI GATC 7 cut(s) 424, 835, 1150, 1387, 1622, 1649, 1694
Sau96I GGNCC 3 cut(s) 101, 790, 1222
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 3 cut(s) 59, 406, 1108
ScrFI CCNGG 4 cut(s) 92, 93, 1002, 1185
SduI GDGCHC 2 cut(s) 84, 1000
SfaNI GCATC 3 cut(s) 592, 655, 1586
SfcI CTRYAG 2 cut(s) 828, 1530
SinI GGWCC 1 cut(s) 1222
SmaI CCCGGG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 1512
SmlI CTYRAG 2 cut(s) 197, 551
SmoI CTYRAG 2 cut(s) 197, 551
SsiI CCGC 4 cut(s) 347, 377, 788, 1097
SspI AATATT 2 cut(s) 931, 1012
SspMI CTAG 2 cut(s) 435, 1301
StyD4I CCNGG 4 cut(s) 90, 91, 1000, 1183
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 228, 518
TatI WGTACW 1 cut(s) 542
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 7 cut(s) 171, 223, 875, 1130, 1490, 1643, 1664
Tru1I TTAA 8 cut(s) 165, 332, 588, 642, 849, 933, 1014, 1323
Tru9I TTAA 8 cut(s) 165, 332, 588, 642, 849, 933, 1014, 1323
TscAI CASTG 3 cut(s) 1387, 1534, 1645
TseFI GTSAC 1 cut(s) 1420
TseI GCWGC 1 cut(s) 704
Tsp45I GTSAC 1 cut(s) 1420
TspDTI ATGAA 3 cut(s) 578, 767, 1256
TspMI CCCGGG 1 cut(s) 91
TspRI CASTG 3 cut(s) 1387, 1534, 1645
VpaK11BI GGWCC 1 cut(s) 1222
VspI ATTAAT 2 cut(s) 933, 1014
XapI RAATTY 2 cut(s) 439, 514
XmaI CCCGGG 1 cut(s) 91
XspI CTAG 2 cut(s) 435, 1301
ZrmI AGTACT 1 cut(s) 544
Zsp2I ATGCAT 2 cut(s) 1509, 1579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.