Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005416

Physical Location & Seq

Genomic Coordinates Reverse (-)

11215425 .. 11216321

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0126600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCAAACCAAATTGTGCTTTTGGCTTTTGTAGCAATGACATGTTCTCTGGTCATTGCTTTCGAGCCTAAACCACTGCAAGATTTCTGCATTGCTGACACTACTAGCTCAGTAATAAGAGTAAATGGGTTCCCTTGCTTGGACTCCAAGCTAGCACAAGCTGACCATTTCTCCTTCGGAGGACTTCACATGCCCGGAAACACCACAAACCCTCTTGGCGTTAAAATTACCCCAGTCAATGTGGCTCAAATTCCAGGACTCAACACCCTTGGCATCTCACTGGCTCGAATTGACTATGCACCAGGGGGTGTTACCCCTCCCCACACTCATCCTCGTGCCACTGAGATTCTGACAGTTGTGAAAGGCAAGATCTATGTTGGCTTTGTGACCTCCAACCCAGAGAATAAGCTCATCTCAAAGGTCCTCAAGAAGGGTGATGTGTTTGTGTTCCCTATTGGACTAGTTCACTTCCAGCAAAATCTGGGATCTGGAACAGCCATTTCACAGTCTTCTCTGAGCAGCCAAAACCCTGGAGTCATCACTATTGCTAACTCAGTTTTTGGACCCAATCCCTCGATTTCAGATGATGTTCTGGCCAAGGCTTTCCAAGTTGACAAATCCATTATTAGCAGTCTGCAGGCACAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

216

Amino Acids

22.81

Weight (kDa)

8.47

Isoelectric Point (pI)

23.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	62 - 207	6.3e-50	Cupin
Cupin_2	PF07883	97 - 165	1.4e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17790 AT1G73150 AT1G73150
fragaria_vesca	FvH4_3g18680 FvH4_3g18680 FvH4_3g18680
malus_domestica	MD03G1240000.v1.1 MD11G1259300.v1.1
prunus_persica	Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1
pyrus_communis	pycom03g18520 pycom11g22910
rosa_chinensis	RchiOBHm_Chr5g0031501
rosa_laevigata	RLG00000033316
rosa_multiflora	Rmu_co8128242.1_g000001 Rmu_sc0006344.1_g000009 Rmu_sc0009888.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048820
rosa_rugosa	Rorug05G0126400 Rorug05G0126500 Rorug05G0126500 Rorug05G0126600 Rorug05G0126700
rosa_samantha	Rh5AG219300 Rh5BG218700 Rh5CG242300 Rh5DG224200
rosa_wichuraiana	Rw5G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	139, 430
AflIII	ACRYGT	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	460
AjnI	CCWGG	3 cut(s)	253, 301, 529
AluBI	AGCT	4 cut(s)	108, 151, 161, 409
AluI	AGCT	4 cut(s)	108, 151, 161, 409
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	421, 563
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	446
AsuNHI	GCTAGC	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	421, 563
BalI	TGGCCA	1 cut(s)	596
BauI	CACGAG	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	531
BciT130I	CCWGG	3 cut(s)	255, 303, 531
BcnI	CCSGG	1 cut(s)	195
BcuI	ACTAGT	1 cut(s)	460
BfaI	CTAG	3 cut(s)	105, 152, 461
BfmI	CTRYAG	1 cut(s)	635
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	4 cut(s)	195, 255, 303, 531
Bme18I	GGWCC	2 cut(s)	421, 563
BmgT120I	GGNCC	2 cut(s)	421, 563
BmiI	GGNNCC	2 cut(s)	131, 565
BmrFI	CCNGG	4 cut(s)	195, 255, 303, 531
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	282
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	268, 302, 529, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 430
Bse1I	ACTGG	2 cut(s)	233, 285
Bse3DI	GCAATG	3 cut(s)	42, 54, 90
BseBI	CCWGG	3 cut(s)	255, 303, 531
BseDI	CCNNGG	4 cut(s)	268, 302, 529, 597
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	139, 430
BseMI	GCAATG	3 cut(s)	42, 54, 90
BseMII	CTCAG	4 cut(s)	123, 333, 506, 567
BseNI	ACTGG	2 cut(s)	233, 285
BseXI	GCAGC	1 cut(s)	531
BshFI	GGCC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	139, 430
BsnI	GGCC	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	369, 485
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	4 cut(s)	122, 334, 507, 566
BspLI	GGNNCC	2 cut(s)	131, 565
BspMAI	CTGCAG	1 cut(s)	639
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	493
BsrDI	GCAATG	3 cut(s)	42, 54, 90
BsrI	ACTGG	2 cut(s)	233, 285
BssECI	CCNNGG	4 cut(s)	268, 302, 529, 597
BssMI	GATC	2 cut(s)	369, 485
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	268, 597
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	3 cut(s)	255, 303, 531
Bst4CI	ACNGT	2 cut(s)	355, 507
BstC8I	GCNNGC	2 cut(s)	153, 639
BstDEI	CTNAG	4 cut(s)	109, 342, 515, 553
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	2 cut(s)	372, 488
BstMBI	GATC	2 cut(s)	369, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	3 cut(s)	255, 303, 531
BstNSI	RCATGY	2 cut(s)	45, 193
BstSCI	CCNGG	4 cut(s)	193, 253, 301, 529
BstSFI	CTRYAG	1 cut(s)	635
BstV1I	GCAGC	1 cut(s)	531
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	369, 485
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	2 cut(s)	369, 485
BsuRI	GGCC	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	74, 278, 339
Cac8I	GCNNGC	2 cut(s)	153, 639
Cfr13I	GGNCC	2 cut(s)	421, 563
CviAII	CATG	2 cut(s)	42, 190
DdeI	CTNAG	4 cut(s)	109, 342, 515, 553
DpnI	GATC	2 cut(s)	371, 487
DpnII	GATC	2 cut(s)	369, 485
EaeI	YGGCCR	1 cut(s)	594
Eco130I	CCWWGG	2 cut(s)	268, 597
Eco47I	GGWCC	2 cut(s)	421, 563
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	253, 301, 529
EcoT14I	CCWWGG	2 cut(s)	268, 597
ErhI	CCWWGG	2 cut(s)	268, 597
FaeI	CATG	2 cut(s)	45, 193
FaiI	YATR	4 cut(s)	43, 191, 297, 375
FatI	CATG	2 cut(s)	41, 189
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	3 cut(s)	105, 152, 461
GluI	GCNGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	596
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	2 cut(s)	45, 193
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	4 cut(s)	143, 258, 346, 534
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	466, 613
Hpy188I	TCNGA	4 cut(s)	179, 351, 516, 583
Hpy188III	TCNNGA	2 cut(s)	427, 489
Hpy8I	GTNNAC	2 cut(s)	466, 613
HpyAV	CCTTC	2 cut(s)	184, 424
HpyCH4III	ACNGT	2 cut(s)	355, 507
HpyCH4V	TGCA	4 cut(s)	79, 90, 299, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	4 cut(s)	109, 342, 515, 553
Hsp92II	CATG	2 cut(s)	45, 193
Kzo9I	GATC	2 cut(s)	369, 485
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	3 cut(s)	105, 152, 461
MaeIII	GTNAC	2 cut(s)	310, 385
MalI	GATC	2 cut(s)	371, 487
MboI	GATC	2 cut(s)	369, 485
MboII	GAAGA	1 cut(s)	501
MflI	RGATCY	2 cut(s)	369, 485
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	5 cut(s)	12, 225, 249, 288, 644
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	3 cut(s)	137, 252, 543
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	173, 222, 327, 342, 400, 434, 583
Mox20I	TGGCCA	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	596
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	4 cut(s)	195, 255, 303, 531
MvaI	CCWGG	3 cut(s)	255, 303, 531
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	369, 485
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	45, 193
NlaIV	GGNNCC	2 cut(s)	131, 565
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	2 cut(s)	45, 193
PciI	ACATGT	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	3 cut(s)	137, 252, 542
PpsI	GAGTC	3 cut(s)	137, 252, 542
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	253, 301, 529
PspGI	CCWGG	3 cut(s)	253, 301, 529
PspN4I	GGNNCC	2 cut(s)	131, 565
PspPI	GGNCC	2 cut(s)	421, 563
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	639
PsuI	RGATCY	2 cut(s)	369, 485
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	2 cut(s)	369, 485
Sau96I	GGNCC	2 cut(s)	421, 563
SchI	GAGTC	3 cut(s)	137, 252, 543
ScrFI	CCNGG	4 cut(s)	195, 255, 303, 531
SetI	ASST	6 cut(s)	110, 153, 163, 392, 411, 423
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	635
SinI	GGWCC	2 cut(s)	421, 563
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	460
Sse9I	AATT	5 cut(s)	12, 225, 249, 288, 644
SspMI	CTAG	3 cut(s)	105, 152, 461
StyD4I	CCNGG	4 cut(s)	193, 253, 301, 529
StyI	CCWWGG	2 cut(s)	268, 597
TaaI	ACNGT	2 cut(s)	355, 507
TaqI	TCGA	3 cut(s)	63, 286, 575
TasI	AATT	5 cut(s)	12, 225, 249, 288, 644
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	81, 285, 346
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	385
TspRI	CASTG	3 cut(s)	81, 285, 346
VpaK11BI	GGWCC	2 cut(s)	421, 563
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	2 cut(s)	45, 193
XspI	CTAG	3 cut(s)	105, 152, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.