transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17790 AT1G73150 AT1G73150 |
| fragaria_vesca | FvH4_3g18680 FvH4_3g18680 FvH4_3g18680 |
| malus_domestica | MD03G1240000.v1.1 MD11G1259300.v1.1 |
| prunus_persica | Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 |
| pyrus_communis | pycom03g18520 pycom11g22910 |
| rosa_chinensis | RchiOBHm_Chr5g0031501 |
| rosa_laevigata | RLG00000033316 |
| rosa_multiflora | Rmu_co8128242.1_g000001 Rmu_sc0006344.1_g000009 Rmu_sc0009888.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048820 |
| rosa_rugosa | Rorug05G0126400 Rorug05G0126500 Rorug05G0126500 Rorug05G0126600 Rorug05G0126700 |
| rosa_samantha | Rh5AG219300 Rh5BG218700 Rh5CG242300 Rh5DG224200 |
| rosa_wichuraiana | Rw5G020000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1094 |
| AccI | GTMKAC | 1 cut(s) | 201 |
| AccII | CGCG | 3 cut(s) | 109, 135, 140 |
| AclI | AACGTT | 1 cut(s) | 1320 |
| AclWI | GGATC | 1 cut(s) | 1394 |
| AcsI | RAATTY | 2 cut(s) | 884, 1054 |
| AcuI | CTGAAG | 1 cut(s) | 591 |
| AcvI | CACGTG | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 875 |
| AfaI | GTAC | 1 cut(s) | 218 |
| AgeI | ACCGGT | 1 cut(s) | 196 |
| AjnI | CCWGG | 5 cut(s) | 668, 1195, 1229, 1348, 1518 |
| AluBI | AGCT | 6 cut(s) | 295, 307, 344, 358, 1088, 1480 |
| AluI | AGCT | 6 cut(s) | 295, 307, 344, 358, 1088, 1480 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 2 cut(s) | 814, 895 |
| AlwI | GGATC | 1 cut(s) | 1394 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 121 |
| Ama87I | CYCGRG | 1 cut(s) | 308 |
| AoxI | GGCC | 5 cut(s) | 110, 172, 426, 551, 1352 |
| ApeKI | GCWGC | 1 cut(s) | 178 |
| ApoI | RAATTY | 2 cut(s) | 884, 1054 |
| AsiGI | ACCGGT | 1 cut(s) | 196 |
| AspLEI | GCGC | 2 cut(s) | 140, 142 |
| AspS9I | GGNCC | 9 cut(s) | 11, 118, 206, 426, 552, 964, 1234, 1352, 1484 |
| AsuC2I | CCSGG | 1 cut(s) | 183 |
| AsuHPI | GGTGA | 3 cut(s) | 96, 853, 1637 |
| AvaI | CYCGRG | 1 cut(s) | 308 |
| AvaII | GGWCC | 6 cut(s) | 11, 118, 206, 964, 1234, 1484 |
| AxyI | CCTNAGG | 1 cut(s) | 114 |
| BaeGI | GKGCMC | 1 cut(s) | 839 |
| BanII | GRGCYC | 3 cut(s) | 309, 669, 1506 |
| BauI | CACGAG | 1 cut(s) | 160 |
| BbrPI | CACGTG | 1 cut(s) | 212 |
| BbsI | GAAGAC | 1 cut(s) | 785 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 165 |
| BccI | CCATC | 3 cut(s) | 644, 820, 1523 |
| BciT130I | CCWGG | 5 cut(s) | 670, 1197, 1231, 1350, 1520 |
| BcnI | CCSGG | 1 cut(s) | 183 |
| BcoDI | GTCTC | 2 cut(s) | 814, 895 |
| BfaI | CTAG | 2 cut(s) | 1313, 1653 |
| BfmI | CTRYAG | 2 cut(s) | 447, 1530 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 171 |
| BisI | GCNGC | 4 cut(s) | 110, 136, 179, 1554 |
| BlsI | GCNGC | 4 cut(s) | 111, 137, 180, 1555 |
| Bme1390I | CCNGG | 6 cut(s) | 183, 670, 1197, 1231, 1350, 1520 |
| Bme18I | GGWCC | 6 cut(s) | 11, 118, 206, 964, 1234, 1484 |
| BmeT110I | CYCGRG | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 9 cut(s) | 11, 118, 206, 426, 552, 964, 1234, 1352, 1484 |
| BmiI | GGNNCC | 3 cut(s) | 1235, 1236, 1346 |
| BmrFI | CCNGG | 6 cut(s) | 183, 670, 1197, 1231, 1350, 1520 |
| BmrI | ACTGGG | 1 cut(s) | 1598 |
| BmsI | GCATC | 3 cut(s) | 155, 774, 1121 |
| BmuI | ACTGGG | 1 cut(s) | 1598 |
| BpiI | GAAGAC | 1 cut(s) | 785 |
| Bpu10I | CCTNAGC | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 1 cut(s) | 621 |
| BpuMI | CCSGG | 1 cut(s) | 183 |
| BsaAI | YACGTR | 1 cut(s) | 212 |
| BsaBI | GATNNNNATC | 2 cut(s) | 951, 1722 |
| BsaHI | GRCGYC | 1 cut(s) | 875 |
| BsaI | GGTCTC | 1 cut(s) | 814 |
| BsaJI | CCNNGG | 9 cut(s) | 107, 133, 264, 565, 668, 1214, 1230, 1348, 1349 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bse118I | RCCGGY | 1 cut(s) | 196 |
| Bse1I | ACTGG | 3 cut(s) | 387, 1425, 1604 |
| Bse21I | CCTNAGG | 1 cut(s) | 114 |
| Bse3DI | GCAATG | 1 cut(s) | 927 |
| Bse8I | GATNNNNATC | 2 cut(s) | 951, 1722 |
| BseBI | CCWGG | 5 cut(s) | 670, 1197, 1231, 1350, 1520 |
| BseDI | CCNNGG | 9 cut(s) | 107, 133, 264, 565, 668, 1214, 1230, 1348, 1349 |
| BseGI | GGATG | 8 cut(s) | 146, 781, 901, 952, 1002, 1192, 1375, 1515 |
| BseJI | GATNNNNATC | 2 cut(s) | 951, 1722 |
| BseMI | GCAATG | 1 cut(s) | 927 |
| BseMII | CTCAG | 6 cut(s) | 128, 272, 1002, 1019, 1291, 1296 |
| BseNI | ACTGG | 3 cut(s) | 387, 1425, 1604 |
| BsePI | GCGCGC | 1 cut(s) | 138 |
| BseRI | GAGGAG | 2 cut(s) | 1086, 1277 |
| BseSI | GKGCMC | 1 cut(s) | 839 |
| BseXI | GCAGC | 1 cut(s) | 165 |
| BseYI | CCCAGC | 1 cut(s) | 753 |
| BsgI | GTGCAG | 1 cut(s) | 1302 |
| Bsh1236I | CGCG | 3 cut(s) | 109, 135, 140 |
| Bsh1285I | CGRYCG | 1 cut(s) | 201 |
| BshFI | GGCC | 5 cut(s) | 112, 174, 428, 553, 1354 |
| BshTI | ACCGGT | 1 cut(s) | 196 |
| BsiEI | CGRYCG | 1 cut(s) | 201 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiHKCI | CYCGRG | 1 cut(s) | 308 |
| BsiSI | CCGG | 2 cut(s) | 182, 197 |
| BslFI | GGGAC | 1 cut(s) | 1247 |
| BsmAI | GTCTC | 2 cut(s) | 814, 895 |
| BsmFI | GGGAC | 1 cut(s) | 1247 |
| BsmI | GAATGC | 1 cut(s) | 82 |
| BsnI | GGCC | 5 cut(s) | 112, 174, 428, 553, 1354 |
| Bso31I | GGTCTC | 1 cut(s) | 814 |
| BsoBI | CYCGRG | 1 cut(s) | 308 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 669, 839, 1506 |
| Bsp143I | GATC | 3 cut(s) | 282, 1399, 1640 |
| BspANI | GGCC | 5 cut(s) | 112, 174, 428, 553, 1354 |
| BspCNI | CTCAG | 6 cut(s) | 127, 271, 1003, 1020, 1290, 1297 |
| BspFNI | CGCG | 3 cut(s) | 109, 135, 140 |
| BspHI | TCATGA | 2 cut(s) | 796, 1290 |
| BspLI | GGNNCC | 3 cut(s) | 1235, 1236, 1346 |
| BspPI | GGATC | 1 cut(s) | 1394 |
| BspQI | GCTCTTC | 1 cut(s) | 1611 |
| BspTNI | GGTCTC | 1 cut(s) | 814 |
| BsrBI | CCGCTC | 1 cut(s) | 1094 |
| BsrDI | GCAATG | 1 cut(s) | 927 |
| BsrFI | RCCGGY | 1 cut(s) | 196 |
| BsrI | ACTGG | 3 cut(s) | 387, 1425, 1604 |
| BssAI | RCCGGY | 1 cut(s) | 196 |
| BssECI | CCNNGG | 9 cut(s) | 107, 133, 264, 565, 668, 1214, 1230, 1348, 1349 |
| BssHII | GCGCGC | 1 cut(s) | 138 |
| BssMI | GATC | 3 cut(s) | 282, 1399, 1640 |
| BssNI | GRCGYC | 1 cut(s) | 875 |
| BssSI | CACGAG | 1 cut(s) | 160 |
| BssT1I | CCWWGG | 3 cut(s) | 264, 565, 1214 |
| Bst2BI | CACGAG | 1 cut(s) | 160 |
| Bst2UI | CCWGG | 5 cut(s) | 670, 1197, 1231, 1350, 1520 |
| Bst4CI | ACNGT | 4 cut(s) | 206, 841, 1531, 1589 |
| Bst6I | CTCTTC | 3 cut(s) | 542, 1611, 1678 |
| BstACI | GRCGYC | 1 cut(s) | 875 |
| BstBAI | YACGTR | 1 cut(s) | 212 |
| BstC8I | GCNNGC | 6 cut(s) | 34, 140, 144, 176, 305, 879 |
| BstDEI | CTNAG | 8 cut(s) | 114, 258, 345, 359, 1011, 1028, 1277, 1305 |
| BstDSI | CCRYGG | 2 cut(s) | 107, 133 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 673 |
| BstF5I | GGATG | 8 cut(s) | 146, 781, 901, 952, 1002, 1192, 1375, 1515 |
| BstFNI | CGCG | 3 cut(s) | 109, 135, 140 |
| BstHHI | GCGC | 2 cut(s) | 140, 142 |
| BstKTI | GATC | 3 cut(s) | 285, 1402, 1643 |
| BstMAI | GTCTC | 2 cut(s) | 814, 895 |
| BstMBI | GATC | 3 cut(s) | 282, 1399, 1640 |
| BstMCI | CGRYCG | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 171, 395, 887, 1360, 1562 |
| BstNI | CCWGG | 5 cut(s) | 670, 1197, 1231, 1350, 1520 |
| BstSCI | CCNGG | 6 cut(s) | 181, 668, 1195, 1229, 1348, 1518 |
| BstSFI | CTRYAG | 2 cut(s) | 447, 1530 |
| BstSLI | GKGCMC | 1 cut(s) | 839 |
| BstUI | CGCG | 3 cut(s) | 109, 135, 140 |
| BstV1I | GCAGC | 1 cut(s) | 165 |
| BstV2I | GAAGAC | 1 cut(s) | 785 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1549 |
| Bsu36I | CCTNAGG | 1 cut(s) | 114 |
| BsuRI | GGCC | 5 cut(s) | 112, 174, 428, 553, 1354 |
| BtgI | CCRYGG | 2 cut(s) | 107, 133 |
| BtsCI | GGATG | 8 cut(s) | 146, 781, 901, 952, 1002, 1192, 1375, 1515 |
| BtsI | GCAGTG | 1 cut(s) | 1663 |
| BtsIMutI | CAGTG | 3 cut(s) | 380, 1285, 1663 |
| Cac8I | GCNNGC | 6 cut(s) | 34, 140, 144, 176, 305, 879 |
| CaiI | CAGNNNCTG | 1 cut(s) | 121 |
| CciI | TCATGA | 2 cut(s) | 796, 1290 |
| CfoI | GCGC | 2 cut(s) | 140, 142 |
| Cfr10I | RCCGGY | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 9 cut(s) | 11, 118, 206, 426, 552, 964, 1234, 1352, 1484 |
| Cfr42I | CCGCGG | 2 cut(s) | 110, 136 |
| CseI | GACGC | 2 cut(s) | 133, 883 |
| Csp6I | GTAC | 1 cut(s) | 217 |
| CspAI | ACCGGT | 1 cut(s) | 196 |
| CviAII | CATG | 6 cut(s) | 86, 235, 395, 797, 1147, 1291 |
| CviQI | GTAC | 1 cut(s) | 217 |
| DdeI | CTNAG | 8 cut(s) | 114, 258, 345, 359, 1011, 1028, 1277, 1305 |
| DpnI | GATC | 3 cut(s) | 284, 1401, 1642 |
| DpnII | GATC | 3 cut(s) | 282, 1399, 1640 |
| Eam1104I | CTCTTC | 3 cut(s) | 542, 1611, 1678 |
| EarI | CTCTTC | 3 cut(s) | 542, 1611, 1678 |
| EciI | GGCGGA | 1 cut(s) | 977 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 3 cut(s) | 264, 565, 1214 |
| Eco24I | GRGCYC | 3 cut(s) | 309, 669, 1506 |
| Eco31I | GGTCTC | 1 cut(s) | 814 |
| Eco47I | GGWCC | 6 cut(s) | 11, 118, 206, 964, 1234, 1484 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 1 cut(s) | 591 |
| Eco72I | CACGTG | 1 cut(s) | 212 |
| Eco81I | CCTNAGG | 1 cut(s) | 114 |
| Eco88I | CYCGRG | 1 cut(s) | 308 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 673 |
| EcoO109I | RGGNCCY | 3 cut(s) | 118, 1234, 1352 |
| EcoRII | CCWGG | 5 cut(s) | 668, 1195, 1229, 1348, 1518 |
| EcoT14I | CCWWGG | 3 cut(s) | 264, 565, 1214 |
| EcoT22I | ATGCAT | 1 cut(s) | 1597 |
| EcoT38I | GRGCYC | 3 cut(s) | 309, 669, 1506 |
| ErhI | CCWWGG | 3 cut(s) | 264, 565, 1214 |
| FaeI | CATG | 6 cut(s) | 89, 238, 398, 800, 1150, 1294 |
| FaqI | GGGAC | 1 cut(s) | 1247 |
| FatI | CATG | 6 cut(s) | 85, 234, 394, 796, 1146, 1290 |
| FauI | CCCGC | 1 cut(s) | 1099 |
| FblI | GTMKAC | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 4 cut(s) | 110, 136, 179, 1554 |
| FokI | GGATG | 8 cut(s) | 133, 788, 908, 959, 1009, 1179, 1382, 1502 |
| FriOI | GRGCYC | 3 cut(s) | 309, 669, 1506 |
| Fsp4HI | GCNGC | 4 cut(s) | 110, 136, 179, 1554 |
| FspBI | CTAG | 2 cut(s) | 1313, 1653 |
| GlaI | GCGC | 2 cut(s) | 139, 141 |
| GluI | GCNGC | 4 cut(s) | 110, 136, 179, 1554 |
| GsaI | CCCAGC | 1 cut(s) | 757 |
| HaeIII | GGCC | 5 cut(s) | 112, 174, 428, 553, 1354 |
| HapII | CCGG | 2 cut(s) | 182, 197 |
| HgaI | GACGC | 2 cut(s) | 133, 883 |
| HhaI | GCGC | 2 cut(s) | 140, 142 |
| Hin1I | GRCGYC | 1 cut(s) | 875 |
| Hin1II | CATG | 6 cut(s) | 89, 238, 398, 800, 1150, 1294 |
| Hin6I | GCGC | 2 cut(s) | 138, 140 |
| HinP1I | GCGC | 2 cut(s) | 138, 140 |
| HincII | GTYRAC | 3 cut(s) | 202, 1162, 1465 |
| HindII | GTYRAC | 3 cut(s) | 202, 1162, 1465 |
| HpaI | GTTAAC | 1 cut(s) | 1465 |
| HpaII | CCGG | 2 cut(s) | 182, 197 |
| HphI | GGTGA | 3 cut(s) | 96, 853, 1637 |
| Hpy166II | GTNNAC | 5 cut(s) | 202, 209, 1162, 1384, 1465 |
| Hpy8I | GTNNAC | 5 cut(s) | 202, 209, 1162, 1384, 1465 |
| Hpy99I | CGWCG | 2 cut(s) | 29, 206 |
| HpyAV | CCTTC | 4 cut(s) | 526, 583, 615, 1311 |
| HpyCH4III | ACNGT | 4 cut(s) | 206, 841, 1531, 1589 |
| HpyCH4IV | ACGT | 3 cut(s) | 211, 1320, 1473 |
| HpyCH4V | TGCA | 5 cut(s) | 398, 890, 920, 1283, 1595 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 171, 395, 887, 1360, 1562 |
| HpyF3I | CTNAG | 8 cut(s) | 114, 258, 345, 359, 1011, 1028, 1277, 1305 |
| HpySE526I | ACGT | 3 cut(s) | 211, 1320, 1473 |
| Hsp92I | GRCGYC | 1 cut(s) | 875 |
| Hsp92II | CATG | 6 cut(s) | 89, 238, 398, 800, 1150, 1294 |
| HspAI | GCGC | 2 cut(s) | 138, 140 |
| KflI | GGGWCCC | 1 cut(s) | 1234 |
| KspAI | GTTAAC | 1 cut(s) | 1465 |
| KspI | CCGCGG | 2 cut(s) | 110, 136 |
| Kzo9I | GATC | 3 cut(s) | 282, 1399, 1640 |
| LguI | GCTCTTC | 1 cut(s) | 1611 |
| LmnI | GCTCC | 4 cut(s) | 693, 1093, 1099, 1477 |
| Lsp1109I | GCAGC | 1 cut(s) | 165 |
| LweI | GCATC | 3 cut(s) | 155, 774, 1121 |
| MaeI | CTAG | 2 cut(s) | 1313, 1653 |
| MaeII | ACGT | 3 cut(s) | 211, 1320, 1473 |
| MaeIII | GTNAC | 2 cut(s) | 597, 1432 |
| MalI | GATC | 3 cut(s) | 284, 1401, 1642 |
| MbiI | CCGCTC | 1 cut(s) | 1094 |
| MboI | GATC | 3 cut(s) | 282, 1399, 1640 |
| MboII | GAAGA | 8 cut(s) | 343, 556, 559, 785, 793, 1339, 1628, 1665 |
| MfeI | CAATTG | 2 cut(s) | 810, 968 |
| MhlI | GDGCHC | 4 cut(s) | 309, 669, 839, 1506 |
| MlyI | GAGTC | 2 cut(s) | 447, 1120 |
| MmeI | TCCRAC | 1 cut(s) | 174 |
| Mph1103I | ATGCAT | 1 cut(s) | 1597 |
| MseI | TTAA | 5 cut(s) | 411, 762, 816, 912, 1464 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1547 |
| MspA1I | CMGCKG | 3 cut(s) | 109, 135, 881 |
| MspI | CCGG | 2 cut(s) | 182, 197 |
| MspR9I | CCNGG | 6 cut(s) | 183, 670, 1197, 1231, 1350, 1520 |
| MunI | CAATTG | 2 cut(s) | 810, 968 |
| Mva1269I | GAATGC | 1 cut(s) | 82 |
| MvaI | CCWGG | 5 cut(s) | 670, 1197, 1231, 1350, 1520 |
| MvnI | CGCG | 3 cut(s) | 109, 135, 140 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 171, 395, 887, 1360, 1562 |
| NciI | CCSGG | 1 cut(s) | 183 |
| NdeII | GATC | 3 cut(s) | 282, 1399, 1640 |
| NlaIII | CATG | 6 cut(s) | 89, 238, 398, 800, 1150, 1294 |
| NlaIV | GGNNCC | 3 cut(s) | 1235, 1236, 1346 |
| NmuCI | GTSAC | 1 cut(s) | 1432 |
| NsiI | ATGCAT | 1 cut(s) | 1597 |
| PaeR7I | CTCGAG | 1 cut(s) | 308 |
| PagI | TCATGA | 2 cut(s) | 796, 1290 |
| PasI | CCCWGGG | 1 cut(s) | 1349 |
| PauI | GCGCGC | 1 cut(s) | 138 |
| PciSI | GCTCTTC | 1 cut(s) | 1611 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 845 |
| PctI | GAATGC | 1 cut(s) | 82 |
| PfoI | TCCNGGA | 1 cut(s) | 1518 |
| PinAI | ACCGGT | 1 cut(s) | 196 |
| PkrI | GCNGC | 4 cut(s) | 111, 137, 180, 1555 |
| PleI | GAGTC | 2 cut(s) | 447, 1120 |
| PmaCI | CACGTG | 1 cut(s) | 212 |
| PmlI | CACGTG | 1 cut(s) | 212 |
| PpsI | GAGTC | 2 cut(s) | 447, 1120 |
| Ppu21I | YACGTR | 1 cut(s) | 212 |
| PpuMI | RGGWCCY | 2 cut(s) | 118, 1234 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| Psp1406I | AACGTT | 1 cut(s) | 1320 |
| Psp5II | RGGWCCY | 2 cut(s) | 118, 1234 |
| Psp6I | CCWGG | 5 cut(s) | 668, 1195, 1229, 1348, 1518 |
| PspCI | CACGTG | 1 cut(s) | 212 |
| PspFI | CCCAGC | 1 cut(s) | 753 |
| PspGI | CCWGG | 5 cut(s) | 668, 1195, 1229, 1348, 1518 |
| PspN4I | GGNNCC | 3 cut(s) | 1235, 1236, 1346 |
| PspPI | GGNCC | 9 cut(s) | 11, 118, 206, 426, 552, 964, 1234, 1352, 1484 |
| PspPPI | RGGWCCY | 2 cut(s) | 118, 1234 |
| PspXI | VCTCGAGB | 1 cut(s) | 308 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 209, 241 |
| PstNI | CAGNNNCTG | 1 cut(s) | 121 |
| PteI | GCGCGC | 1 cut(s) | 138 |
| RsaI | GTAC | 1 cut(s) | 218 |
| RsaNI | GTAC | 1 cut(s) | 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1547 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SacII | CCGCGG | 2 cut(s) | 110, 136 |
| SalI | GTCGAC | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 1611 |
| SaqAI | TTAA | 5 cut(s) | 411, 762, 816, 912, 1464 |
| SatI | GCNGC | 4 cut(s) | 110, 136, 179, 1554 |
| Sau3AI | GATC | 3 cut(s) | 282, 1399, 1640 |
| Sau96I | GGNCC | 9 cut(s) | 11, 118, 206, 426, 552, 964, 1234, 1352, 1484 |
| SchI | GAGTC | 2 cut(s) | 447, 1120 |
| ScrFI | CCNGG | 6 cut(s) | 183, 670, 1197, 1231, 1350, 1520 |
| SduI | GDGCHC | 4 cut(s) | 309, 669, 839, 1506 |
| SfaNI | GCATC | 3 cut(s) | 155, 774, 1121 |
| SfcI | CTRYAG | 2 cut(s) | 447, 1530 |
| Sfr274I | CTCGAG | 1 cut(s) | 308 |
| Sfr303I | CCGCGG | 2 cut(s) | 110, 136 |
| SgrBI | CCGCGG | 2 cut(s) | 110, 136 |
| SinI | GGWCC | 6 cut(s) | 11, 118, 206, 964, 1234, 1484 |
| SlaI | CTCGAG | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1547 |
| SmlI | CTYRAG | 2 cut(s) | 308, 636 |
| SmoI | CTYRAG | 2 cut(s) | 308, 636 |
| SspMI | CTAG | 2 cut(s) | 1313, 1653 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| StyD4I | CCNGG | 6 cut(s) | 181, 668, 1195, 1229, 1348, 1518 |
| StyI | CCWWGG | 3 cut(s) | 264, 565, 1214 |
| TaaI | ACNGT | 4 cut(s) | 206, 841, 1531, 1589 |
| TaiI | ACGT | 3 cut(s) | 214, 1323, 1476 |
| TaqI | TCGA | 4 cut(s) | 201, 309, 1115, 1131 |
| TaqII | GACCGA | 1 cut(s) | 838 |
| TauI | GCSGC | 3 cut(s) | 112, 138, 1556 |
| Tru1I | TTAA | 5 cut(s) | 411, 762, 816, 912, 1464 |
| Tru9I | TTAA | 5 cut(s) | 411, 762, 816, 912, 1464 |
| TscAI | CASTG | 3 cut(s) | 387, 1285, 1663 |
| TseFI | GTSAC | 1 cut(s) | 1432 |
| TseI | GCWGC | 1 cut(s) | 178 |
| Tsp45I | GTSAC | 1 cut(s) | 1432 |
| TspDTI | ATGAA | 8 cut(s) | 344, 752, 785, 941, 1013, 1050, 1098, 1707 |
| TspGWI | ACGGA | 1 cut(s) | 446 |
| TspRI | CASTG | 3 cut(s) | 387, 1285, 1663 |
| VpaK11BI | GGWCC | 6 cut(s) | 11, 118, 206, 964, 1234, 1484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 673 |
| XapI | RAATTY | 2 cut(s) | 884, 1054 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 436, 1573 |
| XhoI | CTCGAG | 1 cut(s) | 308 |
| XmiI | GTMKAC | 1 cut(s) | 201 |
| XspI | CTAG | 2 cut(s) | 1313, 1653 |
| Zsp2I | ATGCAT | 1 cut(s) | 1597 |