Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8128242.1

Orthogroup ID

OG0005416

Physical Location & Seq

Genomic Coordinates Forward (+)

132 .. 627

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8128242.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 496 bp

atggtttcaggcccacttgttggagacgaagccagcaacagattctattcccggaacacccagaatcccaaccatgtcatccgccactcgtcggagcagcagcggcagagcttgatgcagcagttccgaggcgaaacggcgtcggttgactcctccaacaatgggctcgccgacccgggcaatgggccacgtgggtattcaaaggttggggacaaggtgaggatttgcttgaactccaagactgacattaagggaatcaagtggaagctgatgggtgagcttgagcaagtgaggcgcttggtgaggaatctcgaagctaaggaggctcagtttgctgaagggtatggtgtttctcagctttcagatactaatttggtagataataatgttagaactacaatgccatttaggggtttaagtgtttgtacggcggagaatgagaataagggtggtgagtttgcggaggagaaggagaagaagaagaagaagaagaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

165

Amino Acids

18.45

Weight (kDa)

9.49

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17790 AT1G73150 AT1G73150
fragaria_vesca	FvH4_3g18680 FvH4_3g18680 FvH4_3g18680
malus_domestica	MD03G1240000.v1.1 MD11G1259300.v1.1
prunus_persica	Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1
pyrus_communis	pycom03g18520 pycom11g22910
rosa_chinensis	RchiOBHm_Chr5g0031501
rosa_laevigata	RLG00000033316
rosa_multiflora	Rmu_co8128242.1_g000001 Rmu_sc0006344.1_g000009 Rmu_sc0009888.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048820
rosa_rugosa	Rorug05G0126400 Rorug05G0126500 Rorug05G0126500 Rorug05G0126600 Rorug05G0126700
rosa_samantha	Rh5AG219300 Rh5BG218700 Rh5CG242300 Rh5DG224200
rosa_wichuraiana	Rw5G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	4 cut(s)	82, 103, 431, 461
AcuI	CTGAAG	1 cut(s)	357
AcvI	CACGTG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	5 cut(s)	20, 91, 162, 182, 410
AgsI	TTSAA	2 cut(s)	201, 232
AluBI	AGCT	5 cut(s)	111, 268, 280, 317, 358
AluI	AGCT	5 cut(s)	111, 268, 280, 317, 358
Alw26I	GTCTC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	10, 185
ApeKI	GCWGC	3 cut(s)	97, 100, 118
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	11, 185
AsuC2I	CCSGG	3 cut(s)	52, 176, 177
AsuHPI	GGTGA	4 cut(s)	229, 287, 313, 464
AvaI	CYCGRG	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	109, 112, 130
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	153, 444
BcnI	CCSGG	3 cut(s)	52, 176, 177
BcoDI	GTCTC	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	298
BisI	GCNGC	4 cut(s)	98, 101, 104, 119
BlsI	GCNGC	4 cut(s)	99, 102, 105, 120
Bme1390I	CCNGG	3 cut(s)	52, 176, 177
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	11, 185
BmrFI	CCNGG	3 cut(s)	52, 176, 177
BmsI	GCATC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	52, 176, 177
BsaAI	YACGTR	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	127, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 91, 162, 182, 410
Bse3DI	GCAATG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	127, 175
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	5 cut(s)	20, 91, 162, 182, 410
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	341, 368
BseRI	GAGGAG	2 cut(s)	142, 479
BseXI	GCAGC	3 cut(s)	109, 112, 130
BshFI	GGCC	2 cut(s)	12, 187
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	52, 176
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	5 cut(s)	20, 91, 162, 182, 410
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	12, 187
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	168
BspACI	CCGC	4 cut(s)	82, 103, 431, 461
BspANI	GGCC	2 cut(s)	12, 187
BspCNI	CTCAG	2 cut(s)	340, 367
BsrDI	GCAATG	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	127, 175
BssNI	GRCGYC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	34, 168
BstDEI	CTNAG	3 cut(s)	318, 327, 354
BstF5I	GGATG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 292, 323, 332
BstSCI	CCNGG	3 cut(s)	50, 174, 175
BstV1I	GCAGC	3 cut(s)	109, 112, 130
BsuRI	GGCC	2 cut(s)	12, 187
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	34, 168
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	11, 185
Cfr9I	CCCGGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	74
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	3 cut(s)	318, 327, 354
EciI	GGCGGA	2 cut(s)	71, 446
Eco24I	GRGCYC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	357
Eco72I	CACGTG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 345
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	98, 101, 104, 119
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	98, 101, 104, 119
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	4 cut(s)	98, 101, 104, 119
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	12, 187
HapII	CCGG	2 cut(s)	52, 176
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	5 cut(s)	42, 64, 149, 255, 307
HpaII	CCGG	2 cut(s)	52, 176
HphI	GGTGA	4 cut(s)	229, 287, 313, 464
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	94, 128, 364
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	94, 145
HpyAV	CCTTC	2 cut(s)	332, 463
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 292, 323, 332
HpyF3I	CTNAG	3 cut(s)	318, 327, 354
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	46, 65, 74, 189
Lsp1109I	GCAGC	3 cut(s)	109, 112, 130
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	1 cut(s)	190
MboII	GAAGA	4 cut(s)	487, 490, 493, 496
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	72, 180
MnlI	CCTC	7 cut(s)	122, 163, 213, 285, 297, 316, 457
MseI	TTAA	2 cut(s)	249, 416
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	2 cut(s)	52, 176
MspR9I	CCNGG	3 cut(s)	52, 176, 177
MwoI	GCNNNNNNNGC	4 cut(s)	103, 292, 323, 332
NciI	CCSGG	3 cut(s)	52, 176, 177
NlaIII	CATG	1 cut(s)	77
PfeI	GAWTC	4 cut(s)	42, 64, 255, 307
PflMI	CCANNNNNTGG	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	99, 102, 105, 120
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	191
PspCI	CACGTG	1 cut(s)	191
PspPI	GGNCC	2 cut(s)	11, 185
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	249, 416
SatI	GCNGC	4 cut(s)	98, 101, 104, 119
Sau96I	GGNCC	2 cut(s)	11, 185
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	52, 176, 177
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	113, 193, 207, 219, 270, 282, 319, 360
SfaNI	GCATC	1 cut(s)	105
SmaI	CCCGGG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	4 cut(s)	82, 103, 431, 461
StyD4I	CCNGG	3 cut(s)	50, 174, 175
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	4 cut(s)	42, 64, 255, 307
Tru1I	TTAA	2 cut(s)	249, 416
Tru9I	TTAA	2 cut(s)	249, 416
TseI	GCWGC	3 cut(s)	97, 100, 118
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.