Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17790 AT1G73150 AT1G73150 |
| fragaria_vesca | FvH4_3g18680 FvH4_3g18680 FvH4_3g18680 |
| malus_domestica | MD03G1240000.v1.1 MD11G1259300.v1.1 |
| prunus_persica | Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 |
| pyrus_communis | pycom03g18520 pycom11g22910 |
| rosa_chinensis | RchiOBHm_Chr5g0031501 |
| rosa_laevigata | RLG00000033316 |
| rosa_multiflora | Rmu_co8128242.1_g000001 Rmu_sc0006344.1_g000009 Rmu_sc0009888.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048820 |
| rosa_rugosa | Rorug05G0126400 Rorug05G0126500 Rorug05G0126500 Rorug05G0126600 Rorug05G0126700 |
| rosa_samantha | Rh5AG219300 Rh5BG218700 Rh5CG242300 Rh5DG224200 |
| rosa_wichuraiana | Rw5G020000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1004 |
| Acc36I | ACCTGC | 1 cut(s) | 871 |
| AccB1I | GGYRCC | 1 cut(s) | 652 |
| AccBSI | CCGCTC | 1 cut(s) | 770 |
| AciI | CCGC | 3 cut(s) | 193, 768, 940 |
| AclWI | GGATC | 2 cut(s) | 78, 1297 |
| AcsI | RAATTY | 2 cut(s) | 103, 109 |
| AcyI | GRCGYC | 2 cut(s) | 5, 905 |
| AfaI | GTAC | 2 cut(s) | 321, 346 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 20 |
| AflII | CTTAAG | 1 cut(s) | 1123 |
| AgeI | ACCGGT | 1 cut(s) | 1376 |
| AgsI | TTSAA | 9 cut(s) | 176, 190, 361, 418, 631, 641, 662, 815, 1223 |
| AjnI | CCWGG | 1 cut(s) | 960 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1266, 1298 |
| AleI | CACNNNNGTG | 1 cut(s) | 1185 |
| Alw21I | GWGCWC | 1 cut(s) | 1194 |
| Alw26I | GTCTC | 1 cut(s) | 792 |
| Alw44I | GTGCAC | 1 cut(s) | 1190 |
| AlwI | GGATC | 2 cut(s) | 78, 1297 |
| Ama87I | CYCGRG | 2 cut(s) | 884, 1327 |
| AoxI | GGCC | 1 cut(s) | 1216 |
| ApaLI | GTGCAC | 1 cut(s) | 1190 |
| ApeKI | GCWGC | 3 cut(s) | 329, 332, 366 |
| ApoI | RAATTY | 2 cut(s) | 103, 109 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 911, 943 |
| AsiGI | ACCGGT | 1 cut(s) | 1376 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1176 |
| AspS9I | GGNCC | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 1 cut(s) | 522 |
| AsuII | TTCGAA | 2 cut(s) | 35, 107 |
| AvaI | CYCGRG | 2 cut(s) | 884, 1327 |
| AvaII | GGWCC | 1 cut(s) | 11 |
| BaeGI | GKGCMC | 1 cut(s) | 1194 |
| BanI | GGYRCC | 1 cut(s) | 652 |
| BbsI | GAAGAC | 3 cut(s) | 44, 506, 960 |
| Bbv12I | GWGCWC | 1 cut(s) | 1194 |
| BbvCI | CCTCAGC | 1 cut(s) | 546 |
| BbvI | GCAGC | 3 cut(s) | 316, 319, 353 |
| BccI | CCATC | 1 cut(s) | 402 |
| BceAI | ACGGC | 1 cut(s) | 254 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 701, 735 |
| BciT130I | CCWGG | 1 cut(s) | 962 |
| BclI | TGATCA | 1 cut(s) | 231 |
| BcoDI | GTCTC | 1 cut(s) | 792 |
| BfaI | CTAG | 5 cut(s) | 504, 983, 1208, 1311, 1335 |
| BfmI | CTRYAG | 2 cut(s) | 15, 864 |
| BfrI | CTTAAG | 1 cut(s) | 1123 |
| BfuAI | ACCTGC | 1 cut(s) | 871 |
| BisI | GCNGC | 4 cut(s) | 330, 333, 367, 941 |
| BlpI | GCTNAGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 4 cut(s) | 331, 334, 368, 942 |
| Bme1390I | CCNGG | 1 cut(s) | 962 |
| Bme18I | GGWCC | 1 cut(s) | 11 |
| BmeT110I | CYCGRG | 2 cut(s) | 884, 1327 |
| BmgT120I | GGNCC | 1 cut(s) | 11 |
| BmiI | GGNNCC | 2 cut(s) | 477, 654 |
| BmrFI | CCNGG | 1 cut(s) | 962 |
| BmrI | ACTGGG | 1 cut(s) | 848 |
| BmsI | GCATC | 2 cut(s) | 1156, 1265 |
| BmuI | ACTGGG | 1 cut(s) | 848 |
| BpiI | GAAGAC | 3 cut(s) | 44, 506, 960 |
| BpmI | CTGGAG | 3 cut(s) | 408, 944, 1002 |
| Bpu10I | CCTNAGC | 3 cut(s) | 546, 1321, 1357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 207 |
| Bpu14I | TTCGAA | 2 cut(s) | 35, 107 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| Bsa29I | ATCGAT | 1 cut(s) | 711 |
| BsaBI | GATNNNNATC | 2 cut(s) | 132, 606 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 905 |
| BsaJI | CCNNGG | 1 cut(s) | 93 |
| BsaWI | WCCGGW | 1 cut(s) | 1376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 46, 76 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 20 |
| Bse118I | RCCGGY | 1 cut(s) | 1376 |
| Bse1I | ACTGG | 4 cut(s) | 425, 698, 854, 1219 |
| Bse3DI | GCAATG | 1 cut(s) | 582 |
| Bse8I | GATNNNNATC | 2 cut(s) | 132, 606 |
| BseBI | CCWGG | 1 cut(s) | 962 |
| BseCI | ATCGAT | 1 cut(s) | 711 |
| BseDI | CCNNGG | 1 cut(s) | 93 |
| BseGI | GGATG | 2 cut(s) | 413, 556 |
| BseJI | GATNNNNATC | 2 cut(s) | 132, 606 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 20 |
| BseMI | GCAATG | 1 cut(s) | 582 |
| BseMII | CTCAG | 6 cut(s) | 198, 537, 609, 1170, 1335, 1371 |
| BseNI | ACTGG | 4 cut(s) | 425, 698, 854, 1219 |
| BseRI | GAGGAG | 4 cut(s) | 780, 783, 786, 789 |
| BseSI | GKGCMC | 1 cut(s) | 1194 |
| BseXI | GCAGC | 3 cut(s) | 316, 319, 353 |
| BsgI | GTGCAG | 1 cut(s) | 1016 |
| BshFI | GGCC | 1 cut(s) | 1218 |
| BshNI | GGYRCC | 1 cut(s) | 652 |
| BshTI | ACCGGT | 1 cut(s) | 1376 |
| BshVI | ATCGAT | 1 cut(s) | 711 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1194 |
| BsiHKCI | CYCGRG | 2 cut(s) | 884, 1327 |
| BsiSI | CCGG | 1 cut(s) | 1377 |
| BslFI | GGGAC | 2 cut(s) | 866, 932 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 20 |
| BsmAI | GTCTC | 1 cut(s) | 792 |
| BsmFI | GGGAC | 2 cut(s) | 866, 932 |
| BsnI | GGCC | 1 cut(s) | 1218 |
| BsoBI | CYCGRG | 2 cut(s) | 884, 1327 |
| Bsp119I | TTCGAA | 2 cut(s) | 35, 107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1194 |
| Bsp143I | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 207 |
| BspACI | CCGC | 3 cut(s) | 193, 768, 940 |
| BspANI | GGCC | 1 cut(s) | 1218 |
| BspCNI | CTCAG | 6 cut(s) | 199, 538, 610, 1169, 1334, 1370 |
| BspDI | ATCGAT | 1 cut(s) | 711 |
| BspLI | GGNNCC | 2 cut(s) | 477, 654 |
| BspMAI | CTGCAG | 1 cut(s) | 868 |
| BspMI | ACCTGC | 1 cut(s) | 871 |
| BspPI | GGATC | 2 cut(s) | 78, 1297 |
| BspQI | GCTCTTC | 1 cut(s) | 356 |
| BspT104I | TTCGAA | 2 cut(s) | 35, 107 |
| BspT107I | GGYRCC | 1 cut(s) | 652 |
| BspTI | CTTAAG | 1 cut(s) | 1123 |
| BsrBI | CCGCTC | 1 cut(s) | 770 |
| BsrDI | GCAATG | 1 cut(s) | 582 |
| BsrFI | RCCGGY | 1 cut(s) | 1376 |
| BsrI | ACTGG | 4 cut(s) | 425, 698, 854, 1219 |
| BssAI | RCCGGY | 1 cut(s) | 1376 |
| BssECI | CCNNGG | 1 cut(s) | 93 |
| BssMI | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| BssNI | GRCGYC | 2 cut(s) | 5, 905 |
| Bst2UI | CCWGG | 1 cut(s) | 962 |
| Bst4CI | ACNGT | 8 cut(s) | 97, 302, 349, 496, 762, 1264, 1307, 1349 |
| Bst6I | CTCTTC | 4 cut(s) | 356, 636, 894, 1004 |
| BstACI | GRCGYC | 2 cut(s) | 5, 905 |
| BstAFI | CTTAAG | 1 cut(s) | 1123 |
| BstBI | TTCGAA | 2 cut(s) | 35, 107 |
| BstDEI | CTNAG | 7 cut(s) | 207, 546, 618, 947, 1156, 1321, 1357 |
| BstDSI | CCRYGG | 1 cut(s) | 93 |
| BstF5I | GGATG | 2 cut(s) | 413, 556 |
| BstKTI | GATC | 4 cut(s) | 86, 234, 1072, 1292 |
| BstMAI | GTCTC | 1 cut(s) | 792 |
| BstMBI | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 72 |
| BstNI | CCWGG | 1 cut(s) | 962 |
| BstSCI | CCNGG | 1 cut(s) | 960 |
| BstSFI | CTRYAG | 2 cut(s) | 15, 864 |
| BstSLI | GKGCMC | 1 cut(s) | 1194 |
| BstV1I | GCAGC | 3 cut(s) | 316, 319, 353 |
| BstV2I | GAAGAC | 3 cut(s) | 44, 506, 960 |
| Bsu15I | ATCGAT | 1 cut(s) | 711 |
| BsuRI | GGCC | 1 cut(s) | 1218 |
| BsuTUI | ATCGAT | 1 cut(s) | 711 |
| BtgI | CCRYGG | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 413, 556 |
| BtsIMutI | CAGTG | 3 cut(s) | 501, 861, 1354 |
| BveI | ACCTGC | 1 cut(s) | 871 |
| Cfr10I | RCCGGY | 1 cut(s) | 1376 |
| Cfr13I | GGNCC | 1 cut(s) | 11 |
| ClaI | ATCGAT | 1 cut(s) | 711 |
| CseI | GACGC | 1 cut(s) | 894 |
| Csp6I | GTAC | 2 cut(s) | 320, 345 |
| CspAI | ACCGGT | 1 cut(s) | 1376 |
| CviAII | CATG | 6 cut(s) | 323, 452, 599, 719, 1250, 1364 |
| CviQI | GTAC | 2 cut(s) | 320, 345 |
| DdeI | CTNAG | 7 cut(s) | 207, 546, 618, 947, 1156, 1321, 1357 |
| DpnI | GATC | 4 cut(s) | 85, 233, 1071, 1291 |
| DpnII | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| Eam1104I | CTCTTC | 4 cut(s) | 356, 636, 894, 1004 |
| EarI | CTCTTC | 4 cut(s) | 356, 636, 894, 1004 |
| Eco32I | GATATC | 1 cut(s) | 709 |
| Eco47I | GGWCC | 1 cut(s) | 11 |
| Eco88I | CYCGRG | 2 cut(s) | 884, 1327 |
| EcoRI | GAATTC | 2 cut(s) | 103, 109 |
| EcoRII | CCWGG | 1 cut(s) | 960 |
| EcoRV | GATATC | 1 cut(s) | 709 |
| FaeI | CATG | 6 cut(s) | 326, 455, 602, 722, 1253, 1367 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 195, 227, 1106, 1138 |
| FaqI | GGGAC | 2 cut(s) | 866, 932 |
| FatI | CATG | 6 cut(s) | 322, 451, 598, 718, 1249, 1363 |
| FauI | CCCGC | 1 cut(s) | 775 |
| FauNDI | CATATG | 1 cut(s) | 612 |
| FbaI | TGATCA | 1 cut(s) | 231 |
| Fnu4HI | GCNGC | 4 cut(s) | 330, 333, 367, 941 |
| FokI | GGATG | 2 cut(s) | 420, 563 |
| Fsp4HI | GCNGC | 4 cut(s) | 330, 333, 367, 941 |
| FspBI | CTAG | 5 cut(s) | 504, 983, 1208, 1311, 1335 |
| GluI | GCNGC | 4 cut(s) | 330, 333, 367, 941 |
| GsuI | CTGGAG | 3 cut(s) | 408, 944, 1002 |
| HaeIII | GGCC | 1 cut(s) | 1218 |
| HapII | CCGG | 1 cut(s) | 1377 |
| HgaI | GACGC | 1 cut(s) | 894 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 905 |
| Hin1II | CATG | 6 cut(s) | 326, 455, 602, 722, 1253, 1367 |
| HindIII | AAGCTT | 2 cut(s) | 170, 890 |
| HinfI | GANTC | 8 cut(s) | 631, 839, 1098, 1154, 1172, 1196, 1223, 1367 |
| HpaII | CCGG | 1 cut(s) | 1377 |
| HphI | GGTGA | 1 cut(s) | 522 |
| Hpy166II | GTNNAC | 2 cut(s) | 449, 1192 |
| Hpy188I | TCNGA | 7 cut(s) | 138, 354, 557, 1097, 1159, 1345, 1372 |
| Hpy188III | TCNNGA | 7 cut(s) | 405, 659, 1019, 1067, 1073, 1102, 1359 |
| Hpy8I | GTNNAC | 2 cut(s) | 449, 1192 |
| HpyAV | CCTTC | 1 cut(s) | 789 |
| HpyCH4III | ACNGT | 8 cut(s) | 97, 302, 349, 496, 762, 1264, 1307, 1349 |
| HpyCH4IV | ACGT | 1 cut(s) | 926 |
| HpyCH4V | TGCA | 6 cut(s) | 369, 575, 866, 911, 997, 1192 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 72 |
| HpyF3I | CTNAG | 7 cut(s) | 207, 546, 618, 947, 1156, 1321, 1357 |
| HpySE526I | ACGT | 1 cut(s) | 926 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 905 |
| Hsp92II | CATG | 6 cut(s) | 326, 455, 602, 722, 1253, 1367 |
| Ksp22I | TGATCA | 1 cut(s) | 231 |
| Kzo9I | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| LguI | GCTCTTC | 1 cut(s) | 356 |
| LmnI | GCTCC | 7 cut(s) | 225, 271, 326, 475, 727, 775, 1087 |
| Lsp1109I | GCAGC | 3 cut(s) | 316, 319, 353 |
| LweI | GCATC | 2 cut(s) | 1156, 1265 |
| MaeI | CTAG | 5 cut(s) | 504, 983, 1208, 1311, 1335 |
| MaeII | ACGT | 1 cut(s) | 926 |
| MaeIII | GTNAC | 9 cut(s) | 254, 436, 528, 675, 756, 762, 1102, 1210, 1234 |
| MalI | GATC | 4 cut(s) | 85, 233, 1071, 1291 |
| MbiI | CCGCTC | 1 cut(s) | 770 |
| MboI | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| MboII | GAAGA | 9 cut(s) | 49, 137, 157, 373, 511, 653, 911, 965, 1021 |
| MhlI | GDGCHC | 1 cut(s) | 1194 |
| MluCI | AATT | 6 cut(s) | 103, 109, 162, 373, 1241, 1381 |
| MlyI | GAGTC | 1 cut(s) | 1148 |
| MmeI | TCCRAC | 2 cut(s) | 102, 1264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1176 |
| MseI | TTAA | 6 cut(s) | 155, 389, 471, 567, 1124, 1384 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1185 |
| MspCI | CTTAAG | 1 cut(s) | 1123 |
| MspI | CCGG | 1 cut(s) | 1377 |
| MspR9I | CCNGG | 1 cut(s) | 962 |
| MvaI | CCWGG | 1 cut(s) | 962 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 72 |
| NdeI | CATATG | 1 cut(s) | 612 |
| NdeII | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| NlaIII | CATG | 6 cut(s) | 326, 455, 602, 722, 1253, 1367 |
| NlaIV | GGNNCC | 2 cut(s) | 477, 654 |
| NmuCI | GTSAC | 2 cut(s) | 528, 1102 |
| NspV | TTCGAA | 2 cut(s) | 35, 107 |
| OliI | CACNNNNGTG | 1 cut(s) | 1185 |
| PciSI | GCTCTTC | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1176 |
| PfeI | GAWTC | 7 cut(s) | 631, 839, 1098, 1172, 1196, 1223, 1367 |
| PfoI | TCCNGGA | 1 cut(s) | 960 |
| PinAI | ACCGGT | 1 cut(s) | 1376 |
| PkrI | GCNGC | 4 cut(s) | 331, 334, 368, 942 |
| PleI | GAGTC | 1 cut(s) | 1148 |
| PpsI | GAGTC | 1 cut(s) | 1148 |
| PsiI | TTATAA | 1 cut(s) | 1004 |
| Psp6I | CCWGG | 1 cut(s) | 960 |
| PspGI | CCWGG | 1 cut(s) | 960 |
| PspN4I | GGNNCC | 2 cut(s) | 477, 654 |
| PspPI | GGNCC | 1 cut(s) | 11 |
| PstI | CTGCAG | 1 cut(s) | 868 |
| RsaI | GTAC | 2 cut(s) | 321, 346 |
| RsaNI | GTAC | 2 cut(s) | 320, 345 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1185 |
| SapI | GCTCTTC | 1 cut(s) | 356 |
| SaqAI | TTAA | 6 cut(s) | 155, 389, 471, 567, 1124, 1384 |
| SatI | GCNGC | 4 cut(s) | 330, 333, 367, 941 |
| Sau3AI | GATC | 4 cut(s) | 83, 231, 1069, 1289 |
| Sau96I | GGNCC | 1 cut(s) | 11 |
| SchI | GAGTC | 1 cut(s) | 1148 |
| ScrFI | CCNGG | 1 cut(s) | 962 |
| SduI | GDGCHC | 1 cut(s) | 1194 |
| SfaNI | GCATC | 2 cut(s) | 1156, 1265 |
| SfcI | CTRYAG | 2 cut(s) | 15, 864 |
| SfuI | TTCGAA | 2 cut(s) | 35, 107 |
| SinI | GGWCC | 1 cut(s) | 11 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1185 |
| SmlI | CTYRAG | 2 cut(s) | 212, 1123 |
| SmoI | CTYRAG | 2 cut(s) | 212, 1123 |
| Sse9I | AATT | 6 cut(s) | 103, 109, 162, 373, 1241, 1381 |
| SsiI | CCGC | 3 cut(s) | 193, 768, 940 |
| SspI | AATATT | 1 cut(s) | 466 |
| SspMI | CTAG | 5 cut(s) | 504, 983, 1208, 1311, 1335 |
| StyD4I | CCNGG | 1 cut(s) | 960 |
| TaaI | ACNGT | 8 cut(s) | 97, 302, 349, 496, 762, 1264, 1307, 1349 |
| TaiI | ACGT | 1 cut(s) | 929 |
| TaqI | TCGA | 7 cut(s) | 35, 107, 243, 711, 731, 1199, 1267 |
| TasI | AATT | 6 cut(s) | 103, 109, 162, 373, 1241, 1381 |
| TatI | WGTACW | 1 cut(s) | 319 |
| TauI | GCSGC | 1 cut(s) | 943 |
| TfiI | GAWTC | 7 cut(s) | 631, 839, 1098, 1172, 1196, 1223, 1367 |
| Tru1I | TTAA | 6 cut(s) | 155, 389, 471, 567, 1124, 1384 |
| Tru9I | TTAA | 6 cut(s) | 155, 389, 471, 567, 1124, 1384 |
| TscAI | CASTG | 3 cut(s) | 501, 861, 1354 |
| TseFI | GTSAC | 2 cut(s) | 528, 1102 |
| TseI | GCWGC | 3 cut(s) | 329, 332, 366 |
| Tsp45I | GTSAC | 2 cut(s) | 528, 1102 |
| TspDTI | ATGAA | 3 cut(s) | 158, 407, 1380 |
| TspGWI | ACGGA | 1 cut(s) | 692 |
| TspRI | CASTG | 3 cut(s) | 501, 861, 1354 |
| Vha464I | CTTAAG | 1 cut(s) | 1123 |
| VneI | GTGCAC | 1 cut(s) | 1190 |
| VpaK11BI | GGWCC | 1 cut(s) | 11 |
| XapI | RAATTY | 2 cut(s) | 103, 109 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 94 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1176 |
| XspI | CTAG | 5 cut(s) | 504, 983, 1208, 1311, 1335 |