Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005416

Physical Location & Seq

Genomic Coordinates Forward (+)

32544457 .. 32548540

Gene Structure 4084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1240000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGTTCAGATTCGGTTGAATTCTCAGTCCAAGGACGATAGGAGAGAGATTAAGGGGAAGCTGATGGGTGAGCTCGAGCAAGTCAGATGCTTGGTGAAGAATCTTGAAGCTAAGGAGGCTGATCTTGGTGACAGGTATGGTCAATCGCAATTTTCGGCTAATTATGCGGTAGATAATGTTAAACCTACAAAGAGGGTCAATTCGGAGGCAGGTTCTGTAGGACTCCGTGATTCGGGGCTGAATCGGGGTTTGAGTGTTTCGGTTGCAGAGAATAAGAGTGGGGTTGGTCAGTTTGTGGAGAAAGAAATAGTGAAGAAGAGGCCGAAGACAAATCAGTGTTCTGAGTTTCCAATTGGGAAGGGAAAGTTACCGCCTTCGGGGAGTAGCAAGAAGTTGAAACCCAATGTAGGGGGGAGAGGTGGGGGTGGGGGAGAGCCCTGGTTCAGGTCAGGTAAGAATCCGAGTAAAATGTTCAAGAATTGTAGTGCTTTGCTTGACAAATTGATGAAGCATAAGTTTGGCTGGGTGTTTAATAAGCCTGTTGATGCAAAGATGCTTGGTCTTCATGATTACTTTAAGATTGTTAAGAAACCGATGGATTTGGGCACGGTGAGGACGAGGCTGAACGAGAATTGGTATAAGACACCTGAGGAATTTGCAGAGAATGTGAGACTTACATTTAATAATGCAATGTTGTATAACCCGAAAGAGCAGGATGTTCATCTTATGGCAGACCAATTGTTGAAGATGTTTGAAGCCAAGTGGACCGATATAGAGGCTGAGTATAATCTCAATCTGAGAAATGGATTGGGTAATAATTCAAATTTCACAACACCTCTTTCAAGAAAGGTTGAAGCTCCTGTTCCTCCTCCGGCATCAAATATGAGGACTTTGGATAGAGCAGAATCTATGACAAAGCTTGTTGATCCCAAGTTGAAACCTGTGAGTTCTGGTCATTCAGGTAGGGTATCAGTTCCAAAGAAACCAAAAGCTAGGGACCCCGACAAAAGGGATATGACTTATGAGGAGAAGCAGAGGCTCAGCGCAAGCCTTATGACTTTGCCTTCTGAGAAACTAGATAACGTTGTGAAGATTATTAGGAAGAGGAACCCAGGGCCTTTTCAGCAAGAGGATGAGATTGAGGTGGACATTGGTAGTGTTGATCCTGAAACGCTTTGGGAACTGGATAGGTTTGTGACTAATTACAAAAAAAGCTTGAGCAAAGTTCACAGAAACGTGGAGCTTGGTCCTCAACCAATAGCGGAGCCCGACGATGCCATCCAGGAGATGACTGTAGAACCAACCACTACAGTTGCAGCAAAAGACGCCAACGCAGAGGAAAACAACAGTAATACCTTTTCCCCGGTTCGAAGAGAAGAGCAAGGTGATAATGTGAGTGGATCAAGTAGTTCTAGGAGTGATTCTGAATCCTCTTCAAGTGATTCTGACAATGAAAGTTCCTCTGGTGTTGAATCAGATTCAAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

497

Amino Acids

55.23

Weight (kDa)

8.86

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	161 - 245	5.8e-19	Bromodomain
BET	PF17035	339 - 400	9.8e-22	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17790 AT1G73150 AT1G73150
fragaria_vesca	FvH4_3g18680 FvH4_3g18680 FvH4_3g18680
malus_domestica	MD03G1240000.v1.1 MD11G1259300.v1.1
prunus_persica	Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1
pyrus_communis	pycom03g18520 pycom11g22910
rosa_chinensis	RchiOBHm_Chr5g0031501
rosa_laevigata	RLG00000033316
rosa_multiflora	Rmu_co8128242.1_g000001 Rmu_sc0006344.1_g000009 Rmu_sc0009888.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048820
rosa_rugosa	Rorug05G0126400 Rorug05G0126500 Rorug05G0126500 Rorug05G0126600 Rorug05G0126700
rosa_samantha	Rh5AG219300 Rh5BG218700 Rh5CG242300 Rh5DG224200
rosa_wichuraiana	Rw5G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AciI	CCGC	3 cut(s)	167, 371, 1262
AclI	AACGTT	1 cut(s)	1083
AclWI	GGATC	3 cut(s)	920, 1157, 1408
AcsI	RAATTY	3 cut(s)	19, 653, 823
AcyI	GRCGYC	1 cut(s)	1326
AfiI	CCNNNNNNNGG	6 cut(s)	232, 377, 407, 408, 444, 1008
AjnI	CCWGG	3 cut(s)	437, 1111, 1281
AluBI	AGCT	8 cut(s)	61, 73, 110, 857, 919, 992, 1215, 1243
AluI	AGCT	8 cut(s)	61, 73, 110, 857, 919, 992, 1215, 1243
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	3 cut(s)	920, 1157, 1408
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	320, 1115
ApeKI	GCWGC	1 cut(s)	1316
ApoI	RAATTY	3 cut(s)	19, 653, 823
AspLEI	GCGC	1 cut(s)	1046
AspS9I	GGNCC	4 cut(s)	765, 997, 1115, 1247
AsuC2I	CCSGG	1 cut(s)	1364
AsuHPI	GGTGA	5 cut(s)	80, 106, 140, 622, 1397
AsuII	TTCGAA	1 cut(s)	1369
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	3 cut(s)	765, 997, 1247
AxyI	CCTNAGG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	3 cut(s)	75, 438, 1269
BbsI	GAAGAC	2 cut(s)	332, 554
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	1328
BccI	CCATC	3 cut(s)	58, 589, 1286
BciT130I	CCWGG	3 cut(s)	439, 1113, 1283
BcnI	CCSGG	1 cut(s)	1364
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	3 cut(s)	993, 1076, 1413
BfmI	CTRYAG	3 cut(s)	216, 1293, 1308
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	1317
BlpI	GCTNAGC	1 cut(s)	1040
BlsI	GCNGC	1 cut(s)	1318
Bme1390I	CCNGG	4 cut(s)	439, 1113, 1283, 1364
Bme18I	GGWCC	3 cut(s)	765, 997, 1247
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	4 cut(s)	765, 997, 1115, 1247
BmiI	GGNNCC	4 cut(s)	998, 999, 1109, 1266
BmrFI	CCNGG	4 cut(s)	439, 1113, 1283, 1364
BmsI	GCATC	5 cut(s)	77, 535, 543, 884, 1264
BpiI	GAAGAC	2 cut(s)	332, 554
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	1040
Bpu14I	TTCGAA	1 cut(s)	1369
BpuEI	CTTGAG	1 cut(s)	1237
BpuMI	CCSGG	1 cut(s)	1364
BsaBI	GATNNNNATC	2 cut(s)	720, 1482
BsaHI	GRCGYC	1 cut(s)	1326
BsaJI	CCNNGG	5 cut(s)	30, 437, 1111, 1112, 1362
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 377, 407, 408, 444, 1008
Bse1I	ACTGG	1 cut(s)	1188
Bse21I	CCTNAGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	2 cut(s)	720, 1482
BseBI	CCWGG	3 cut(s)	439, 1113, 1283
BseDI	CCNNGG	5 cut(s)	30, 437, 1111, 1112, 1362
BseGI	GGATG	3 cut(s)	721, 1138, 1278
BseJI	GATNNNNATC	2 cut(s)	720, 1482
BseLI	CCNNNNNNNGG	6 cut(s)	232, 377, 407, 408, 444, 1008
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	7 cut(s)	38, 333, 639, 771, 788, 1054, 1059
BseNI	ACTGG	1 cut(s)	1188
BseRI	GAGGAG	2 cut(s)	858, 1040
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	1328
BseYI	CCCAGC	1 cut(s)	522
BshFI	GGCC	2 cut(s)	322, 1117
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	872, 1364
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	6 cut(s)	232, 377, 407, 408, 444, 1008
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	2 cut(s)	322, 1117
BsoBI	CYCGRG	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	1369
Bsp1286I	GDGCHC	4 cut(s)	75, 438, 608, 1269
Bsp143I	GATC	4 cut(s)	121, 925, 1162, 1400
Bsp1720I	GCTNAGC	1 cut(s)	1040
BspACI	CCGC	3 cut(s)	167, 371, 1262
BspANI	GGCC	2 cut(s)	322, 1117
BspCNI	CTCAG	7 cut(s)	37, 334, 640, 772, 789, 1053, 1060
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	4 cut(s)	998, 999, 1109, 1266
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	3 cut(s)	920, 1157, 1408
BspQI	GCTCTTC	1 cut(s)	1371
BspT104I	TTCGAA	1 cut(s)	1369
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	1188
BssECI	CCNNGG	5 cut(s)	30, 437, 1111, 1112, 1362
BssMI	GATC	4 cut(s)	121, 925, 1162, 1400
BssNI	GRCGYC	1 cut(s)	1326
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	3 cut(s)	439, 1113, 1283
Bst4CI	ACNGT	4 cut(s)	610, 1294, 1312, 1349
Bst6I	CTCTTC	5 cut(s)	311, 1097, 1366, 1371, 1438
BstACI	GRCGYC	1 cut(s)	1326
BstBI	TTCGAA	1 cut(s)	1369
BstC8I	GCNNGC	1 cut(s)	1048
BstDEI	CTNAG	8 cut(s)	24, 111, 342, 648, 780, 797, 1040, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	721, 1138, 1278
BstHHI	GCGC	1 cut(s)	1046
BstKTI	GATC	4 cut(s)	124, 928, 1165, 1403
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	4 cut(s)	121, 925, 1162, 1400
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 164, 1123, 1325
BstNI	CCWGG	3 cut(s)	439, 1113, 1283
BstSCI	CCNGG	4 cut(s)	437, 1111, 1281, 1362
BstSFI	CTRYAG	3 cut(s)	216, 1293, 1308
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	1328
BstV2I	GAAGAC	2 cut(s)	332, 554
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	322, 1117
BtsCI	GGATG	3 cut(s)	721, 1138, 1278
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	1048
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	1 cut(s)	1046
Cfr13I	GGNCC	4 cut(s)	765, 997, 1115, 1247
CseI	GACGC	1 cut(s)	1334
CspCI	CAANNNNNGTGG	2 cut(s)	1294, 1329
CviAII	CATG	1 cut(s)	566
DdeI	CTNAG	8 cut(s)	24, 111, 342, 648, 780, 797, 1040, 1068
DpnI	GATC	4 cut(s)	123, 927, 1164, 1402
DpnII	GATC	4 cut(s)	121, 925, 1162, 1400
Eam1104I	CTCTTC	5 cut(s)	311, 1097, 1366, 1371, 1438
EarI	CTCTTC	5 cut(s)	311, 1097, 1366, 1371, 1438
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	3 cut(s)	75, 438, 1269
Eco47I	GGWCC	3 cut(s)	765, 997, 1247
Eco53kI	GAGCTC	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoO109I	RGGNCCY	2 cut(s)	997, 1115
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	437, 1111, 1281
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	3 cut(s)	75, 438, 1269
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	569
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	1317
FokI	GGATG	3 cut(s)	728, 1145, 1265
FriOI	GRGCYC	3 cut(s)	75, 438, 1269
Fsp4HI	GCNGC	1 cut(s)	1317
FspBI	CTAG	3 cut(s)	993, 1076, 1413
GlaI	GCGC	1 cut(s)	1045
GluI	GCNGC	1 cut(s)	1317
GsaI	CCCAGC	1 cut(s)	526
HaeIII	GGCC	2 cut(s)	322, 1117
HapII	CCGG	2 cut(s)	872, 1364
HgaI	GACGC	1 cut(s)	1334
HhaI	GCGC	1 cut(s)	1046
Hin1I	GRCGYC	1 cut(s)	1326
Hin1II	CATG	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	1044
HinP1I	GCGC	1 cut(s)	1044
HindIII	AAGCTT	2 cut(s)	917, 1213
HpaII	CCGG	2 cut(s)	872, 1364
HphI	GGTGA	5 cut(s)	80, 106, 140, 622, 1397
Hpy166II	GTNNAC	3 cut(s)	765, 1147, 1228
Hpy188III	TCNNGA	5 cut(s)	104, 475, 566, 843, 1166
Hpy8I	GTNNAC	3 cut(s)	765, 1147, 1228
Hpy99I	CGWCG	1 cut(s)	1274
HpyAV	CCTTC	3 cut(s)	352, 384, 1074
HpyCH4III	ACNGT	4 cut(s)	610, 1294, 1312, 1349
HpyCH4IV	ACGT	2 cut(s)	1083, 1236
HpyCH4V	TGCA	5 cut(s)	266, 548, 659, 689, 1316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 164, 1123, 1325
HpyF3I	CTNAG	8 cut(s)	24, 111, 342, 648, 780, 797, 1040, 1068
HpySE526I	ACGT	2 cut(s)	1083, 1236
Hsp92I	GRCGYC	1 cut(s)	1326
Hsp92II	CATG	1 cut(s)	569
HspAI	GCGC	1 cut(s)	1044
KflI	GGGWCCC	1 cut(s)	997
Kzo9I	GATC	4 cut(s)	121, 925, 1162, 1400
LguI	GCTCTTC	1 cut(s)	1371
LmnI	GCTCC	3 cut(s)	862, 1240, 1264
Lsp1109I	GCAGC	1 cut(s)	1328
LweI	GCATC	5 cut(s)	77, 535, 543, 884, 1264
MaeI	CTAG	3 cut(s)	993, 1076, 1413
MaeII	ACGT	2 cut(s)	1083, 1236
MaeIII	GTNAC	3 cut(s)	128, 366, 1195
MalI	GATC	4 cut(s)	123, 927, 1164, 1402
MboI	GATC	4 cut(s)	121, 925, 1162, 1400
MfeI	CAATTG	2 cut(s)	351, 737
MhlI	GDGCHC	4 cut(s)	75, 438, 608, 1269
MlyI	GAGTC	1 cut(s)	216
MseI	TTAA	6 cut(s)	51, 180, 531, 576, 585, 681
MspI	CCGG	2 cut(s)	872, 1364
MspR9I	CCNGG	4 cut(s)	439, 1113, 1283, 1364
MunI	CAATTG	2 cut(s)	351, 737
MvaI	CCWGG	3 cut(s)	439, 1113, 1283
MwoI	GCNNNNNNNGC	4 cut(s)	116, 164, 1123, 1325
NciI	CCSGG	1 cut(s)	1364
NdeII	GATC	4 cut(s)	121, 925, 1162, 1400
NlaIII	CATG	1 cut(s)	569
NlaIV	GGNNCC	4 cut(s)	998, 999, 1109, 1266
NmuCI	GTSAC	2 cut(s)	128, 1195
NspV	TTCGAA	1 cut(s)	1369
PaeR7I	CTCGAG	1 cut(s)	74
PagI	TCATGA	1 cut(s)	565
PasI	CCCWGGG	1 cut(s)	1112
PciSI	GCTCTTC	1 cut(s)	1371
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	1281
PkrI	GCNGC	1 cut(s)	1318
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	997
Psp124BI	GAGCTC	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	997
Psp6I	CCWGG	3 cut(s)	437, 1111, 1281
PspFI	CCCAGC	1 cut(s)	522
PspGI	CCWGG	3 cut(s)	437, 1111, 1281
PspN4I	GGNNCC	4 cut(s)	998, 999, 1109, 1266
PspPI	GGNCC	4 cut(s)	765, 997, 1115, 1247
PspPPI	RGGWCCY	1 cut(s)	997
PspXI	VCTCGAGB	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	1371
SaqAI	TTAA	6 cut(s)	51, 180, 531, 576, 585, 681
SatI	GCNGC	1 cut(s)	1317
Sau3AI	GATC	4 cut(s)	121, 925, 1162, 1400
Sau96I	GGNCC	4 cut(s)	765, 997, 1115, 1247
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	4 cut(s)	439, 1113, 1283, 1364
SduI	GDGCHC	4 cut(s)	75, 438, 608, 1269
SfaNI	GCATC	5 cut(s)	77, 535, 543, 884, 1264
SfcI	CTRYAG	3 cut(s)	216, 1293, 1308
Sfr274I	CTCGAG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	1369
SinI	GGWCC	3 cut(s)	765, 997, 1247
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	74, 1216
SmoI	CTYRAG	2 cut(s)	74, 1216
SsiI	CCGC	3 cut(s)	167, 371, 1262
SspMI	CTAG	3 cut(s)	993, 1076, 1413
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	4 cut(s)	437, 1111, 1281, 1362
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	610, 1294, 1312, 1349
TaiI	ACGT	2 cut(s)	1086, 1239
TaqI	TCGA	2 cut(s)	75, 1369
TaqII	GACCGA	1 cut(s)	782
Tru1I	TTAA	6 cut(s)	51, 180, 531, 576, 585, 681
Tru9I	TTAA	6 cut(s)	51, 180, 531, 576, 585, 681
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	2 cut(s)	128, 1195
TseI	GCWGC	1 cut(s)	1316
Tsp45I	GTSAC	2 cut(s)	128, 1195
TspDTI	ATGAA	4 cut(s)	521, 554, 710, 1467
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	765, 997, 1247
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	3 cut(s)	19, 653, 823
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	3 cut(s)	993, 1076, 1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.