transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17790 AT1G73150 AT1G73150 |
| fragaria_vesca | FvH4_3g18680 FvH4_3g18680 FvH4_3g18680 |
| malus_domestica | MD03G1240000.v1.1 MD11G1259300.v1.1 |
| prunus_persica | Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 Prupe.4G170600_v2.0.a1 |
| pyrus_communis | pycom03g18520 pycom11g22910 |
| rosa_chinensis | RchiOBHm_Chr5g0031501 |
| rosa_laevigata | RLG00000033316 |
| rosa_multiflora | Rmu_co8128242.1_g000001 Rmu_sc0006344.1_g000009 Rmu_sc0009888.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048820 |
| rosa_rugosa | Rorug05G0126400 Rorug05G0126500 Rorug05G0126500 Rorug05G0126600 Rorug05G0126700 |
| rosa_samantha | Rh5AG219300 Rh5BG218700 Rh5CG242300 Rh5DG224200 |
| rosa_wichuraiana | Rw5G020000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 702 |
| Acc36I | ACCTGC | 1 cut(s) | 1258 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 20 |
| AccII | CGCG | 1 cut(s) | 425 |
| AciI | CCGC | 3 cut(s) | 425, 785, 893 |
| AclWI | GGATC | 7 cut(s) | 912, 1229, 1466, 1717, 1731, 1744, 1789 |
| AcsI | RAATTY | 3 cut(s) | 535, 583, 950 |
| AcuI | CTGAAG | 3 cut(s) | 351, 527, 1346 |
| AcvI | CACGTG | 1 cut(s) | 185 |
| AcyI | GRCGYC | 1 cut(s) | 134 |
| AfaI | GTAC | 2 cut(s) | 391, 610 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 20, 176, 177, 521, 524 |
| AjnI | CCWGG | 1 cut(s) | 1143 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 949, 981, 1443, 1475 |
| Alw26I | GTCTC | 3 cut(s) | 18, 122, 790 |
| AlwI | GGATC | 7 cut(s) | 912, 1229, 1466, 1717, 1731, 1744, 1789 |
| Ama87I | CYCGRG | 1 cut(s) | 1302 |
| AoxI | GGCC | 4 cut(s) | 10, 179, 572, 685 |
| ApaI | GGGCCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 5 cut(s) | 97, 112, 773, 857, 1640 |
| ApoI | RAATTY | 3 cut(s) | 535, 583, 950 |
| AseI | ATTAAT | 1 cut(s) | 1083 |
| AspS9I | GGNCC | 7 cut(s) | 10, 11, 179, 572, 1067, 1141, 1306 |
| AsuC2I | CCSGG | 3 cut(s) | 171, 523, 1673 |
| AsuHPI | GGTGA | 5 cut(s) | 223, 281, 307, 458, 748 |
| AsuII | TTCGAA | 1 cut(s) | 194 |
| AvaI | CYCGRG | 1 cut(s) | 1302 |
| AvaII | GGWCC | 3 cut(s) | 1067, 1141, 1306 |
| BaeGI | GKGCMC | 1 cut(s) | 14 |
| BamHI | GGATCC | 1 cut(s) | 1736 |
| BanII | GRGCYC | 3 cut(s) | 14, 162, 171 |
| BbrPI | CACGTG | 1 cut(s) | 185 |
| BbsI | GAAGAC | 1 cut(s) | 479 |
| BbvI | GCAGC | 5 cut(s) | 109, 124, 760, 869, 1652 |
| BccI | CCATC | 2 cut(s) | 259, 847 |
| BceAI | ACGGC | 2 cut(s) | 147, 786 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 101, 135 |
| BciT130I | CCWGG | 1 cut(s) | 1145 |
| BclI | TGATCA | 1 cut(s) | 358 |
| BcnI | CCSGG | 3 cut(s) | 171, 523, 1673 |
| BcoDI | GTCTC | 3 cut(s) | 18, 122, 790 |
| BfaI | CTAG | 3 cut(s) | 498, 1385, 1722 |
| BfmI | CTRYAG | 2 cut(s) | 897, 1430 |
| BfuAI | ACCTGC | 1 cut(s) | 1258 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 317 |
| BisI | GCNGC | 6 cut(s) | 98, 113, 774, 858, 894, 1641 |
| BlpI | GCTNAGC | 2 cut(s) | 321, 1349 |
| BlsI | GCNGC | 6 cut(s) | 99, 114, 775, 859, 895, 1642 |
| Bme1390I | CCNGG | 4 cut(s) | 171, 523, 1145, 1673 |
| Bme18I | GGWCC | 3 cut(s) | 1067, 1141, 1306 |
| BmeT110I | CYCGRG | 1 cut(s) | 1302 |
| BmgT120I | GGNCC | 7 cut(s) | 10, 11, 179, 572, 1067, 1141, 1306 |
| BmiI | GGNNCC | 8 cut(s) | 12, 573, 1068, 1149, 1284, 1307, 1308, 1738 |
| BmrFI | CCNGG | 4 cut(s) | 171, 523, 1145, 1673 |
| BmsI | GCATC | 4 cut(s) | 99, 661, 724, 1673 |
| BpiI | GAAGAC | 1 cut(s) | 479 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 460, 492 |
| BpmI | CTGGAG | 1 cut(s) | 296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 675 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 321, 1349 |
| Bpu14I | TTCGAA | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 1 cut(s) | 641 |
| BpuMI | CCSGG | 3 cut(s) | 171, 523, 1673 |
| Bsa29I | ATCGAT | 1 cut(s) | 1217 |
| BsaAI | YACGTR | 1 cut(s) | 185 |
| BsaHI | GRCGYC | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 4 cut(s) | 231, 312, 522, 1671 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 20, 176, 177, 521, 524 |
| Bse118I | RCCGGY | 2 cut(s) | 664, 1279 |
| Bse1I | ACTGG | 1 cut(s) | 1497 |
| Bse3DI | GCAATG | 1 cut(s) | 181 |
| BseBI | CCWGG | 1 cut(s) | 1145 |
| BseCI | ATCGAT | 1 cut(s) | 1217 |
| BseDI | CCNNGG | 4 cut(s) | 231, 312, 522, 1671 |
| BseGI | GGATG | 2 cut(s) | 715, 796 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 20, 176, 177, 521, 524 |
| BseMI | GCAATG | 1 cut(s) | 181 |
| BseMII | CTCAG | 6 cut(s) | 335, 362, 768, 1004, 1363, 1368 |
| BseNI | ACTGG | 1 cut(s) | 1497 |
| BseRI | GAGGAG | 8 cut(s) | 301, 1140, 1143, 1146, 1149, 1167, 1349, 1548 |
| BseSI | GKGCMC | 1 cut(s) | 14 |
| BseXI | GCAGC | 5 cut(s) | 109, 124, 760, 869, 1652 |
| BseYI | CCCAGC | 1 cut(s) | 648 |
| Bsh1236I | CGCG | 1 cut(s) | 425 |
| BshFI | GGCC | 4 cut(s) | 12, 181, 574, 687 |
| BshVI | ATCGAT | 1 cut(s) | 1217 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1302 |
| BsiSI | CCGG | 7 cut(s) | 92, 171, 522, 575, 665, 1280, 1673 |
| BslFI | GGGAC | 5 cut(s) | 218, 745, 1022, 1319, 1654 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 20, 176, 177, 521, 524 |
| BsmAI | GTCTC | 3 cut(s) | 18, 122, 790 |
| BsmBI | CGTCTC | 2 cut(s) | 18, 122 |
| BsmFI | GGGAC | 5 cut(s) | 218, 745, 1022, 1319, 1654 |
| BsnI | GGCC | 4 cut(s) | 12, 181, 574, 687 |
| BsoBI | CYCGRG | 1 cut(s) | 1302 |
| Bsp119I | TTCGAA | 1 cut(s) | 194 |
| Bsp120I | GGGCCC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 3 cut(s) | 14, 162, 171 |
| Bsp143I | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 321, 1349 |
| BspACI | CCGC | 3 cut(s) | 425, 785, 893 |
| BspANI | GGCC | 4 cut(s) | 12, 181, 574, 687 |
| BspCNI | CTCAG | 6 cut(s) | 334, 361, 769, 1003, 1362, 1369 |
| BspDI | ATCGAT | 1 cut(s) | 1217 |
| BspFNI | CGCG | 1 cut(s) | 425 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 8 cut(s) | 12, 573, 1068, 1149, 1284, 1307, 1308, 1738 |
| BspMI | ACCTGC | 1 cut(s) | 1258 |
| BspPI | GGATC | 7 cut(s) | 912, 1229, 1466, 1717, 1731, 1744, 1789 |
| BspT104I | TTCGAA | 1 cut(s) | 194 |
| BsrDI | GCAATG | 1 cut(s) | 181 |
| BsrFI | RCCGGY | 2 cut(s) | 664, 1279 |
| BsrI | ACTGG | 1 cut(s) | 1497 |
| BssAI | RCCGGY | 2 cut(s) | 664, 1279 |
| BssECI | CCNNGG | 4 cut(s) | 231, 312, 522, 1671 |
| BssMI | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| BssNI | GRCGYC | 1 cut(s) | 134 |
| BssT1I | CCWWGG | 2 cut(s) | 231, 312 |
| Bst2UI | CCWGG | 1 cut(s) | 1145 |
| Bst4CI | ACNGT | 2 cut(s) | 736, 1615 |
| Bst6I | CTCTTC | 7 cut(s) | 461, 542, 596, 734, 876, 1167, 1747 |
| BstACI | GRCGYC | 1 cut(s) | 134 |
| BstBAI | YACGTR | 1 cut(s) | 185 |
| BstBI | TTCGAA | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 162 |
| BstDEI | CTNAG | 7 cut(s) | 321, 348, 675, 777, 990, 1349, 1377 |
| BstF5I | GGATG | 2 cut(s) | 715, 796 |
| BstFNI | CGCG | 1 cut(s) | 425 |
| BstKTI | GATC | 9 cut(s) | 361, 490, 907, 1237, 1474, 1690, 1712, 1739, 1784 |
| BstMAI | GTCTC | 3 cut(s) | 18, 122, 790 |
| BstMBI | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 97, 166, 317, 782, 1553 |
| BstNI | CCWGG | 1 cut(s) | 1145 |
| BstSCI | CCNGG | 4 cut(s) | 169, 521, 1143, 1671 |
| BstSFI | CTRYAG | 2 cut(s) | 897, 1430 |
| BstSLI | GKGCMC | 1 cut(s) | 14 |
| BstUI | CGCG | 1 cut(s) | 425 |
| BstV1I | GCAGC | 5 cut(s) | 109, 124, 760, 869, 1652 |
| BstV2I | GAAGAC | 1 cut(s) | 479 |
| BstX2I | RGATCY | 1 cut(s) | 1736 |
| BstYI | RGATCY | 1 cut(s) | 1736 |
| Bsu15I | ATCGAT | 1 cut(s) | 1217 |
| BsuRI | GGCC | 4 cut(s) | 12, 181, 574, 687 |
| BsuTUI | ATCGAT | 1 cut(s) | 1217 |
| BtsCI | GGATG | 2 cut(s) | 715, 796 |
| BtsI | GCAGTG | 1 cut(s) | 1471 |
| BtsIMutI | CAGTG | 1 cut(s) | 1471 |
| BveI | ACCTGC | 1 cut(s) | 1258 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 162 |
| CciI | TCATGA | 1 cut(s) | 691 |
| Cfr10I | RCCGGY | 2 cut(s) | 664, 1279 |
| Cfr13I | GGNCC | 7 cut(s) | 10, 11, 179, 572, 1067, 1141, 1306 |
| ClaI | ATCGAT | 1 cut(s) | 1217 |
| CseI | GACGC | 1 cut(s) | 123 |
| Csp6I | GTAC | 2 cut(s) | 390, 609 |
| CviAII | CATG | 7 cut(s) | 74, 644, 692, 817, 848, 1048, 1628 |
| CviQI | GTAC | 2 cut(s) | 390, 609 |
| DdeI | CTNAG | 7 cut(s) | 321, 348, 675, 777, 990, 1349, 1377 |
| DpnI | GATC | 9 cut(s) | 360, 489, 906, 1236, 1473, 1689, 1711, 1738, 1783 |
| DpnII | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| Eam1104I | CTCTTC | 7 cut(s) | 461, 542, 596, 734, 876, 1167, 1747 |
| EarI | CTCTTC | 7 cut(s) | 461, 542, 596, 734, 876, 1167, 1747 |
| Eco130I | CCWWGG | 2 cut(s) | 231, 312 |
| Eco24I | GRGCYC | 3 cut(s) | 14, 162, 171 |
| Eco47I | GGWCC | 3 cut(s) | 1067, 1141, 1306 |
| Eco57I | CTGAAG | 3 cut(s) | 351, 527, 1346 |
| Eco72I | CACGTG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 1302 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1067, 1306 |
| EcoRI | GAATTC | 2 cut(s) | 583, 950 |
| EcoRII | CCWGG | 1 cut(s) | 1143 |
| EcoT14I | CCWWGG | 2 cut(s) | 231, 312 |
| EcoT22I | ATGCAT | 1 cut(s) | 1666 |
| EcoT38I | GRGCYC | 3 cut(s) | 14, 162, 171 |
| ErhI | CCWWGG | 2 cut(s) | 231, 312 |
| Esp3I | CGTCTC | 2 cut(s) | 18, 122 |
| FaeI | CATG | 7 cut(s) | 77, 647, 695, 820, 851, 1051, 1631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1536, 1568 |
| FaqI | GGGAC | 5 cut(s) | 218, 745, 1022, 1319, 1654 |
| FatI | CATG | 7 cut(s) | 73, 643, 691, 816, 847, 1047, 1627 |
| FbaI | TGATCA | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 6 cut(s) | 98, 113, 774, 858, 894, 1641 |
| FokI | GGATG | 2 cut(s) | 702, 803 |
| FriOI | GRGCYC | 3 cut(s) | 14, 162, 171 |
| Fsp4HI | GCNGC | 6 cut(s) | 98, 113, 774, 858, 894, 1641 |
| FspBI | CTAG | 3 cut(s) | 498, 1385, 1722 |
| GluI | GCNGC | 6 cut(s) | 98, 113, 774, 858, 894, 1641 |
| GsaI | CCCAGC | 1 cut(s) | 652 |
| GsuI | CTGGAG | 1 cut(s) | 296 |
| HaeIII | GGCC | 4 cut(s) | 12, 181, 574, 687 |
| HapII | CCGG | 7 cut(s) | 92, 171, 522, 575, 665, 1280, 1673 |
| HgaI | GACGC | 1 cut(s) | 123 |
| Hin1I | GRCGYC | 1 cut(s) | 134 |
| Hin1II | CATG | 7 cut(s) | 77, 647, 695, 820, 851, 1051, 1631 |
| HpaII | CCGG | 7 cut(s) | 92, 171, 522, 575, 665, 1280, 1673 |
| HphI | GGTGA | 5 cut(s) | 223, 281, 307, 458, 748 |
| Hpy99I | CGWCG | 1 cut(s) | 139 |
| HpyAV | CCTTC | 9 cut(s) | 190, 326, 475, 528, 698, 1176, 1182, 1370, 1383 |
| HpyCH4III | ACNGT | 2 cut(s) | 736, 1615 |
| HpyCH4IV | ACGT | 4 cut(s) | 82, 184, 803, 843 |
| HpyCH4V | TGCA | 4 cut(s) | 112, 1253, 1591, 1664 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 97, 166, 317, 782, 1553 |
| HpyF3I | CTNAG | 7 cut(s) | 321, 348, 675, 777, 990, 1349, 1377 |
| HpySE526I | ACGT | 4 cut(s) | 82, 184, 803, 843 |
| Hsp92I | GRCGYC | 1 cut(s) | 134 |
| Hsp92II | CATG | 7 cut(s) | 77, 647, 695, 820, 851, 1051, 1631 |
| KflI | GGGWCCC | 1 cut(s) | 1306 |
| Ksp22I | TGATCA | 1 cut(s) | 358 |
| Kzo9I | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| LmnI | GCTCC | 6 cut(s) | 94, 277, 288, 988, 1153, 1561 |
| Lsp1109I | GCAGC | 5 cut(s) | 109, 124, 760, 869, 1652 |
| LweI | GCATC | 4 cut(s) | 99, 661, 724, 1673 |
| MaeI | CTAG | 3 cut(s) | 498, 1385, 1722 |
| MaeII | ACGT | 4 cut(s) | 82, 184, 803, 843 |
| MaeIII | GTNAC | 4 cut(s) | 83, 419, 510, 1504 |
| MalI | GATC | 9 cut(s) | 360, 489, 906, 1236, 1473, 1689, 1711, 1738, 1783 |
| MboI | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| MflI | RGATCY | 1 cut(s) | 1736 |
| MhlI | GDGCHC | 3 cut(s) | 14, 162, 171 |
| MlyI | GAGTC | 2 cut(s) | 469, 1192 |
| Mph1103I | ATGCAT | 1 cut(s) | 1666 |
| MseI | TTAA | 5 cut(s) | 243, 657, 711, 918, 1083 |
| MslI | CAYNNNNRTG | 1 cut(s) | 642 |
| MspI | CCGG | 7 cut(s) | 92, 171, 522, 575, 665, 1280, 1673 |
| MspR9I | CCNGG | 4 cut(s) | 171, 523, 1145, 1673 |
| MvaI | CCWGG | 1 cut(s) | 1145 |
| MvnI | CGCG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 97, 166, 317, 782, 1553 |
| NciI | CCSGG | 3 cut(s) | 171, 523, 1673 |
| NdeII | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| NlaIII | CATG | 7 cut(s) | 77, 647, 695, 820, 851, 1051, 1631 |
| NlaIV | GGNNCC | 8 cut(s) | 12, 573, 1068, 1149, 1284, 1307, 1308, 1738 |
| NmeAIII | GCCGAG | 1 cut(s) | 190 |
| NmuCI | GTSAC | 2 cut(s) | 83, 1504 |
| NsiI | ATGCAT | 1 cut(s) | 1666 |
| NspV | TTCGAA | 1 cut(s) | 194 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PflFI | GACNNNGTC | 1 cut(s) | 133 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 20 |
| PkrI | GCNGC | 6 cut(s) | 99, 114, 775, 859, 895, 1642 |
| PleI | GAGTC | 2 cut(s) | 469, 1192 |
| PmaCI | CACGTG | 1 cut(s) | 185 |
| PmlI | CACGTG | 1 cut(s) | 185 |
| PpsI | GAGTC | 2 cut(s) | 469, 1192 |
| Ppu21I | YACGTR | 1 cut(s) | 185 |
| PpuMI | RGGWCCY | 2 cut(s) | 1067, 1306 |
| PshBI | ATTAAT | 1 cut(s) | 1083 |
| PsiI | TTATAA | 1 cut(s) | 702 |
| Psp5II | RGGWCCY | 2 cut(s) | 1067, 1306 |
| Psp6I | CCWGG | 1 cut(s) | 1143 |
| PspCI | CACGTG | 1 cut(s) | 185 |
| PspFI | CCCAGC | 1 cut(s) | 648 |
| PspGI | CCWGG | 1 cut(s) | 1143 |
| PspN4I | GGNNCC | 8 cut(s) | 12, 573, 1068, 1149, 1284, 1307, 1308, 1738 |
| PspOMI | GGGCCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 7 cut(s) | 10, 11, 179, 572, 1067, 1141, 1306 |
| PspPPI | RGGWCCY | 2 cut(s) | 1067, 1306 |
| PsuI | RGATCY | 1 cut(s) | 1736 |
| PsyI | GACNNNGTC | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 391, 610 |
| RsaNI | GTAC | 2 cut(s) | 390, 609 |
| RseI | CAYNNNNRTG | 1 cut(s) | 642 |
| SaqAI | TTAA | 5 cut(s) | 243, 657, 711, 918, 1083 |
| SatI | GCNGC | 6 cut(s) | 98, 113, 774, 858, 894, 1641 |
| Sau3AI | GATC | 9 cut(s) | 358, 487, 904, 1234, 1471, 1687, 1709, 1736, 1781 |
| Sau96I | GGNCC | 7 cut(s) | 10, 11, 179, 572, 1067, 1141, 1306 |
| SchI | GAGTC | 2 cut(s) | 469, 1192 |
| ScrFI | CCNGG | 4 cut(s) | 171, 523, 1145, 1673 |
| SduI | GDGCHC | 3 cut(s) | 14, 162, 171 |
| SfaNI | GCATC | 4 cut(s) | 99, 661, 724, 1673 |
| SfcI | CTRYAG | 2 cut(s) | 897, 1430 |
| SfuI | TTCGAA | 1 cut(s) | 194 |
| SinI | GGWCC | 3 cut(s) | 1067, 1141, 1306 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 642 |
| SmlI | CTYRAG | 1 cut(s) | 620 |
| SmoI | CTYRAG | 1 cut(s) | 620 |
| SsiI | CCGC | 3 cut(s) | 425, 785, 893 |
| SspI | AATATT | 1 cut(s) | 1081 |
| SspMI | CTAG | 3 cut(s) | 498, 1385, 1722 |
| StyD4I | CCNGG | 4 cut(s) | 169, 521, 1143, 1671 |
| StyI | CCWWGG | 2 cut(s) | 231, 312 |
| TaaI | ACNGT | 2 cut(s) | 736, 1615 |
| TaiI | ACGT | 4 cut(s) | 85, 187, 806, 846 |
| TaqI | TCGA | 7 cut(s) | 121, 149, 194, 306, 587, 1180, 1217 |
| TatI | WGTACW | 2 cut(s) | 389, 608 |
| TauI | GCSGC | 1 cut(s) | 896 |
| Tru1I | TTAA | 5 cut(s) | 243, 657, 711, 918, 1083 |
| Tru9I | TTAA | 5 cut(s) | 243, 657, 711, 918, 1083 |
| TscAI | CASTG | 1 cut(s) | 1471 |
| TseFI | GTSAC | 2 cut(s) | 83, 1504 |
| TseI | GCWGC | 5 cut(s) | 97, 112, 773, 857, 1640 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 1504 |
| TspDTI | ATGAA | 5 cut(s) | 647, 680, 836, 1340, 1644 |
| TspGWI | ACGGA | 1 cut(s) | 261 |
| TspRI | CASTG | 1 cut(s) | 1471 |
| Tth111I | GACNNNGTC | 1 cut(s) | 133 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 3 cut(s) | 1067, 1141, 1306 |
| VspI | ATTAAT | 1 cut(s) | 1083 |
| XapI | RAATTY | 3 cut(s) | 535, 583, 950 |
| XspI | CTAG | 3 cut(s) | 498, 1385, 1722 |
| Zsp2I | ATGCAT | 1 cut(s) | 1666 |