Rorug05G0126700

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005416
Physical Location & Seq
Forward (+)
11221339 .. 11225412
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0126700.1

Sequence Viewer

Length: 720 bp
ATGGTCATCAAACCTTTTACCGTGGACTTGGATAAGCCTCTCGTCTTCCAGGTTGGTCATCTTGGCGAAGCTTACAATGAATGGGTTCACCAACCTATTGTCAGCAAGGAAGGCCCCAGATTTTTTGCAAATGACTATATGGAGCTCTTGACCCGCACAGCATGGTGGGTGATTCCACTTGTTTGGCTGCCTGTAGTATCCTGGTTAGTCTCCATGTCTTTTCGAATGGGGCTTACTTTACCTCAGGTAGCTTTAGCAGTGGTTGGTGGCATCTTTATTTGGACATTGATGGAGTATGTTTTGCATCGCTTCCTTTTTCATATGAAAACAACAGGCTATTGGGGAAACACCATTCATTATCTTTTTCATGGTTGCCATCACAAGCACCCTATGGATGGGATGCGCCTTGTTTTTCCCCCTGCTGCGACAGCTATTCTCTGTGTGCCGTTTTGGAATACGTTTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTGTTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATACAAAAGATTGACTCAAGATCTGAAGAGATATCACTTGAACCATCACTTCAGAAATCAAAGTAAGGGATTCGGGATCACTTCCCCTTTATGGGACAATGTTTTCGGAACAGTGCCTTCAACAAAAGCTGCCGAGAAAATGAGTAACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

239

Amino Acids

27.54

Weight (kDa)

9.42

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 88 - 226 1.5e-17 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 650
AcuI CTGAAG 2 cut(s) 601, 611
AfiI CCNNNNNNNGG 3 cut(s) 395, 657, 658
AgsI TTSAA 2 cut(s) 607, 687
AjnI CCWGG 2 cut(s) 48, 200
AluBI AGCT 5 cut(s) 71, 145, 251, 431, 695
AluI AGCT 5 cut(s) 71, 145, 251, 431, 695
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 650
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 3 cut(s) 187, 422, 695
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 80, 181, 465
AsuII TTCGAA 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 243
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 174, 409, 682
BccI CCATC 5 cut(s) 283, 384, 389, 487, 618
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 50, 202
BciVI GTATCC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 558
BfuI GTATCC 1 cut(s) 208
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 188, 423, 696
BlsI GCNGC 3 cut(s) 189, 424, 697
Bme1390I CCNGG 2 cut(s) 50, 202
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 115, 508
BmrFI CCNGG 2 cut(s) 50, 202
BmsI GCATC 3 cut(s) 279, 313, 390
BpiI GAAGAC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 21, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 395, 657, 658
Bse1I ACTGG 1 cut(s) 715
Bse21I CCTNAGG 1 cut(s) 243
BseBI CCWGG 2 cut(s) 50, 202
BseDI CCNNGG 2 cut(s) 21, 556
BseGI GGATG 2 cut(s) 400, 405
BseLI CCNNNNNNNGG 3 cut(s) 395, 657, 658
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 715
BseXI GCAGC 3 cut(s) 174, 409, 682
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 395, 657, 658
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 586, 642
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 115, 508
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 650
BspT104I TTCGAA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 2 cut(s) 21, 556
BssMI GATC 2 cut(s) 586, 642
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 2 cut(s) 50, 202
Bst4CI ACNGT 2 cut(s) 22, 679
Bst6I CTCTTC 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 2 cut(s) 21, 556
BstF5I GGATG 2 cut(s) 400, 405
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 2 cut(s) 589, 645
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 586, 642
BstMWI GCNNNNNNNGC 2 cut(s) 111, 428
BstNI CCWGG 2 cut(s) 50, 202
BstSCI CCNGG 2 cut(s) 48, 200
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 174, 409, 682
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 183
BstYI RGATCY 1 cut(s) 586
Bsu36I CCTNAGG 1 cut(s) 243
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 2 cut(s) 21, 556
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 400, 405
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 264, 684
BveI ACCTGC 1 cut(s) 558
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 4 cut(s) 162, 214, 368, 557
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 588, 644
DpnII GATC 2 cut(s) 586, 642
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 601, 611
Eco81I CCTNAGG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 48, 200
EcoRV GATATC 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 4 cut(s) 165, 217, 371, 560
FaqI GGGAC 1 cut(s) 674
FatI CATG 4 cut(s) 161, 213, 367, 556
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 2 cut(s) 321, 529
Fnu4HI GCNGC 3 cut(s) 188, 423, 696
FokI GGATG 2 cut(s) 407, 412
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 188, 423, 696
GlaI GCGC 1 cut(s) 404
GluI GCNGC 3 cut(s) 188, 423, 696
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 491
HhaI GCGC 1 cut(s) 405
Hin1II CATG 4 cut(s) 165, 217, 371, 560
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 172, 580, 636
HpaII CCGG 1 cut(s) 491
HphI GGTGA 3 cut(s) 80, 181, 465
Hpy166II GTNNAC 2 cut(s) 25, 88
Hpy188I TCNGA 3 cut(s) 591, 620, 674
Hpy188III TCNNGA 3 cut(s) 148, 584, 640
Hpy8I GTNNAC 2 cut(s) 25, 88
HpyAV CCTTC 2 cut(s) 104, 693
HpyCH4III ACNGT 2 cut(s) 22, 679
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 3 cut(s) 128, 304, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 428
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 4 cut(s) 165, 217, 371, 560
HspAI GCGC 1 cut(s) 403
Kzo9I GATC 2 cut(s) 586, 642
LmnI GCTCC 2 cut(s) 142, 493
Lsp1109I GCAGC 3 cut(s) 174, 409, 682
LweI GCATC 3 cut(s) 279, 313, 390
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 535, 710
MalI GATC 2 cut(s) 588, 644
MboI GATC 2 cut(s) 586, 642
MboII GAAGA 2 cut(s) 37, 604
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 147
MlyI GAGTC 1 cut(s) 574
MnlI CCTC 4 cut(s) 48, 252, 486, 497
MroXI GAANNNNTTC 1 cut(s) 84
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 50, 202
MvaI CCWGG 2 cut(s) 50, 202
MwoI GCNNNNNNNGC 2 cut(s) 111, 428
NcoI CCATGG 1 cut(s) 556
NdeI CATATG 2 cut(s) 321, 529
NdeII GATC 2 cut(s) 586, 642
NlaIII CATG 4 cut(s) 165, 217, 371, 560
NlaIV GGNNCC 2 cut(s) 115, 508
NmuCI GTSAC 1 cut(s) 535
NspV TTCGAA 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 172, 636
PkrI GCNGC 3 cut(s) 189, 424, 697
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 48, 200
PspGI CCWGG 2 cut(s) 48, 200
PspN4I GGNNCC 2 cut(s) 115, 508
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 586
SacI GAGCTC 1 cut(s) 147
SatI GCNGC 3 cut(s) 188, 423, 696
Sau3AI GATC 2 cut(s) 586, 642
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 2 cut(s) 50, 202
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 3 cut(s) 279, 313, 390
SfcI CTRYAG 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SsiI CCGC 1 cut(s) 154
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 48, 200
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 22, 679
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 223
TfiI GAWTC 2 cut(s) 172, 636
TscAI CASTG 2 cut(s) 264, 684
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 3 cut(s) 187, 422, 695
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 5 cut(s) 93, 308, 338, 344, 356
TspRI CASTG 2 cut(s) 264, 684
XmnI GAANNNNTTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.