AT1G17880
NAC Family

nascent polypeptide-associated complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011463
Physical Location & Seq
Reverse (-)
6152384 .. 6153982
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17880.1

Sequence Viewer

Length: 498 bp
ATGAATAGGGAGAAGTTGATGAAGATGGCTAATACCGTCCGCACTGGCGGAAAGGGTACTGTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTTCAAAGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCCGCTATTGAAGAAGTTAACATCTTTAAGGATGATGTTGTTATTCAGTTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAACACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATCATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAACAGTTCCAGAAACAGGCTTCTGGTGAAGGTAATGCCGCCTCAGCAACCATACAAGAAGAGGATGATGACGATGTCCCAGAGCTTGTTGGAGAGACATTCGAAACTGCTGCTGAAGAGAAAGCACCAGCTGCTGCTGCTTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

165

Amino Acids

17.95

Weight (kDa)

6.62

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 36 - 91 3.9e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 40, 48, 156, 255, 387
AcuI CTGAAG 2 cut(s) 356, 483
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 364
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 119, 164, 221, 228
AluBI AGCT 4 cut(s) 224, 343, 433, 479
AluI AGCT 4 cut(s) 224, 343, 433, 479
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 437
Alw44I GTGCAC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 482
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 5 cut(s) 233, 458, 479, 482, 485
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 386
AsuII TTCGAA 1 cut(s) 450
AsuNHI GCTAGC 1 cut(s) 343
AvaII GGWCC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 391
BbvI GCAGC 5 cut(s) 220, 445, 466, 469, 472
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 6 cut(s) 234, 387, 459, 480, 483, 486
BlsI GCNGC 6 cut(s) 235, 388, 460, 481, 484, 487
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmtI GCTAGC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 49
Bse21I CCTNAGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 190, 418
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 3 cut(s) 278, 308, 405
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 5 cut(s) 220, 445, 466, 469, 472
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 410
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 5 cut(s) 40, 48, 156, 255, 387
BspCNI CTCAG 3 cut(s) 277, 307, 404
BspOI GCTAGC 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 37, 61, 354
Bst6I CTCTTC 2 cut(s) 402, 459
BstAFI CTTAAG 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 5 cut(s) 213, 264, 294, 391, 495
BstF5I GGATG 2 cut(s) 190, 418
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 4 cut(s) 230, 392, 479, 485
BstSLI GKGCMC 1 cut(s) 87
BstV1I GCAGC 5 cut(s) 220, 445, 466, 469, 472
Bsu36I CCTNAGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 190, 418
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 243, 325
CviJI RGCY 9 cut(s) 29, 80, 115, 224, 306, 343, 368, 433, 479
CviKI_1 RGCY 9 cut(s) 29, 80, 115, 224, 306, 343, 368, 433, 479
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 5 cut(s) 213, 264, 294, 391, 495
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 402, 459
EarI CTCTTC 2 cut(s) 402, 459
EciI GGCGGA 1 cut(s) 63
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 356, 483
Eco81I CCTNAGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 286
FaeI CATG 2 cut(s) 246, 328
FaiI YATR 3 cut(s) 244, 326, 401
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 410
FatI CATG 2 cut(s) 242, 324
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 234, 387, 459, 480, 483, 486
FokI GGATG 2 cut(s) 197, 425
Fsp4HI GCNGC 6 cut(s) 234, 387, 459, 480, 483, 486
FspBI CTAG 1 cut(s) 344
GluI GCNGC 6 cut(s) 234, 387, 459, 480, 483, 486
Hin1II CATG 2 cut(s) 246, 328
HincII GTYRAC 2 cut(s) 145, 172
HindII GTYRAC 2 cut(s) 145, 172
HindIII AAGCTT 1 cut(s) 222
HpaI GTTAAC 2 cut(s) 145, 172
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 3 cut(s) 85, 145, 172
Hpy188I TCNGA 3 cut(s) 65, 267, 297
Hpy188III TCNNGA 1 cut(s) 358
Hpy8I GTNNAC 3 cut(s) 85, 145, 172
HpyAV CCTTC 3 cut(s) 70, 299, 371
HpyCH4III ACNGT 3 cut(s) 37, 61, 354
HpyCH4V TGCA 3 cut(s) 85, 236, 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 392, 479, 485
HpyF3I CTNAG 5 cut(s) 213, 264, 294, 391, 495
Hsp92II CATG 2 cut(s) 246, 328
KspAI GTTAAC 2 cut(s) 145, 172
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 8 cut(s) 30, 330, 347, 350, 357, 371, 441, 489
Lsp1109I GCAGC 5 cut(s) 220, 445, 466, 469, 472
MaeI CTAG 1 cut(s) 344
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 8 cut(s) 34, 78, 85, 176, 349, 419, 476, 483
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 3 cut(s) 135, 228, 275
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 105, 273, 303, 400, 403
MseI TTAA 4 cut(s) 129, 144, 171, 180
MspA1I CMGCKG 1 cut(s) 479
MspCI CTTAAG 1 cut(s) 128
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 230, 392, 479, 485
NdeII GATC 1 cut(s) 297
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 2 cut(s) 246, 328
NspV TTCGAA 1 cut(s) 450
PflFI GACNNNGTC 1 cut(s) 422
PkrI GCNGC 6 cut(s) 235, 388, 460, 481, 484, 487
PspPI GGNCC 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 4 cut(s) 129, 144, 171, 180
SatI GCNGC 6 cut(s) 234, 387, 459, 480, 483, 486
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 87
SetI ASST 7 cut(s) 219, 226, 336, 345, 382, 435, 481
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 135, 228, 275
SsiI CCGC 5 cut(s) 40, 48, 156, 255, 387
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 3 cut(s) 37, 61, 354
TaqI TCGA 1 cut(s) 450
TasI AATT 3 cut(s) 135, 228, 275
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 4 cut(s) 129, 144, 171, 180
Tru9I TTAA 4 cut(s) 129, 144, 171, 180
TscAI CASTG 1 cut(s) 49
TseI GCWGC 5 cut(s) 233, 458, 479, 482, 485
TspDTI ATGAA 3 cut(s) 17, 35, 193
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 128
VneI GTGCAC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 314
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.