MD06G1239900.v1.1
NAC Family

Nascent polypeptide-associated complex subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011463
Physical Location & Seq
Reverse (-)
37006638 .. 37009352
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1239900.v1.1.491

Sequence Viewer

Length: 468 bp
ATGGCTGGTGCGGTTCGCACTGGTGGAAAGGGCAGCGTGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACTACCACAGACGACAAACGGCTTCAGAGCACCCTCAAGAGGATAGGGGTGAATGCTATTCCTGCAATCGAGGAAGTTAACATATTCAAGGATGATGTAGTTATCCAGTTCATAAACCCCAAAGTTCAAGCTTCAATTGCTGCCAACACCTGGGTTGTTAGCGGTTCTCCTCAAACAAAGAAGTTGCAAGATATTCTTCCCAGTATTATCAGCCACTTGGGGCCTGATAACTTGGACAATTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGGTGGAGCCACTGCACAAGAGGACGATGATGATGAGGTCCCTGAGCTTGTGGCTGGGGAGACCTTTGAAGCTGCTGCAGAGGAGAAGGACAAGGAGGAGAATCAAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

156

Amino Acids

16.67

Weight (kDa)

5.47

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 28 - 83 3.1e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AciI CCGC 2 cut(s) 11, 231
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 108, 219, 353
AgsI TTSAA 5 cut(s) 157, 197, 204, 313, 422
AjnI CCWGG 2 cut(s) 218, 346
AluBI AGCT 4 cut(s) 200, 400, 425, 461
AluI AGCT 4 cut(s) 200, 400, 425, 461
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 407
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 4 cut(s) 33, 209, 425, 428
AspS9I GGNCC 2 cut(s) 290, 391
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 4 cut(s) 45, 196, 412, 415
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 220, 348
BcoDI GTCTC 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 4 cut(s) 34, 210, 426, 429
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 4 cut(s) 35, 211, 427, 430
Bme1390I CCNGG 2 cut(s) 220, 348
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 290, 391
BmiI GGNNCC 3 cut(s) 291, 361, 393
BmrFI CCNGG 2 cut(s) 220, 348
BmrI ACTGGG 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 219, 353
Bse1I ACTGG 3 cut(s) 25, 175, 270
BseBI CCWGG 2 cut(s) 220, 348
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 108, 219, 353
BseMII CTCAG 2 cut(s) 315, 387
BseNI ACTGG 3 cut(s) 25, 175, 270
BseRI GAGGAG 4 cut(s) 55, 228, 449, 464
BseXI GCAGC 4 cut(s) 45, 196, 412, 415
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 3 cut(s) 108, 219, 353
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 101
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 2 cut(s) 11, 231
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 316, 388
BspLI GGNNCC 3 cut(s) 291, 361, 393
BspMAI CTGCAG 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 407
BsrI ACTGG 3 cut(s) 25, 175, 270
BssECI CCNNGG 1 cut(s) 219
Bst2UI CCWGG 2 cut(s) 220, 348
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 324, 396, 465
BstF5I GGATG 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 407
BstMWI GCNNNNNNNGC 4 cut(s) 131, 206, 350, 359
BstNI CCWGG 2 cut(s) 220, 348
BstSCI CCNGG 2 cut(s) 218, 346
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 4 cut(s) 45, 196, 412, 415
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 18, 363
Cac8I GCNNGC 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 290, 391
CsiI ACCWGGT 1 cut(s) 346
DdeI CTNAG 3 cut(s) 324, 396, 465
DraIII CACNNNGTG 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 290, 391
EcoRII CCWGG 2 cut(s) 218, 346
FaiI YATR 2 cut(s) 152, 182
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 377
Fnu4HI GCNGC 4 cut(s) 34, 210, 426, 429
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 34, 210, 426, 429
GluI GCNGC 4 cut(s) 34, 210, 426, 429
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 2 cut(s) 198, 459
HinfI GANTC 1 cut(s) 454
HpaI GTTAAC 1 cut(s) 148
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 61, 148
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 106, 334
Hpy8I GTNNAC 2 cut(s) 61, 148
HpyAV CCTTC 2 cut(s) 46, 433
HpyCH4V TGCA 4 cut(s) 134, 256, 368, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 206, 350, 359
HpyF3I CTNAG 3 cut(s) 324, 396, 465
KspAI GTTAAC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 4 cut(s) 45, 196, 412, 415
MabI ACCWGGT 1 cut(s) 346
MboII GAAGA 3 cut(s) 61, 257, 325
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 204, 307
MnlI CCTC 9 cut(s) 33, 102, 113, 133, 249, 367, 382, 427, 442
MseI TTAA 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 220, 348
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 2 cut(s) 220, 348
MwoI GCNNNNNNNGC 4 cut(s) 131, 206, 350, 359
NlaIV GGNNCC 3 cut(s) 291, 361, 393
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 454
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 4 cut(s) 35, 211, 427, 430
PpuMI RGGWCCY 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 218, 346
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 218, 346
PspN4I GGNNCC 3 cut(s) 291, 361, 393
PspPI GGNCC 2 cut(s) 290, 391
PspPPI RGGWCCY 1 cut(s) 391
PstI CTGCAG 1 cut(s) 433
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 4 cut(s) 34, 210, 426, 429
Sau96I GGNCC 2 cut(s) 290, 391
ScrFI CCNGG 2 cut(s) 220, 348
SduI GDGCHC 1 cut(s) 101
SetI ASST 8 cut(s) 202, 221, 349, 393, 402, 419, 427, 463
SexAI ACCWGGT 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 204, 307
SsiI CCGC 2 cut(s) 11, 231
StyD4I CCNGG 2 cut(s) 218, 346
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 204, 307
TfiI GAWTC 1 cut(s) 454
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 25, 370
TseI GCWGC 4 cut(s) 33, 209, 425, 428
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 2 cut(s) 25, 370
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.