RchiOBHm_Chr7g0177001
NAC Family

Nascent polypeptide-associated complex subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011463
Physical Location & Seq
Forward (+)
162497 .. 165357
2861 bp
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UTR
Exon/CDS
Intron
PRQ15765

Sequence Viewer

Length: 483 bp
ATGAAGATGGCTGGTGCTGTTCGCACTGGTGGAAAGGGTAGCATGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACCACCACAGATGACAAAAGACTTCAGAGCACCCTCAAGAGAATAGGGGTGAATGCTATTCCTGCAATCGAGGAGGTCAACATATTTAAGGATGATGTAGTTATTCAGTTCATAAATCCTAAAGTTCAAGCTTCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAGTTGCAGGATATTCTACCTAGTATTATCAGCCACTTGGGGCCAGATAACCTGGACAACTTGAAGAAACTAGCAGAGCAGTTTCAAAAGCAATCCCCGGGTGCTGGTGCTGGTGGAGCCACCGCCCCAGAGGATGATGATGATGAGGTCCCAGAGCTTGTTGCTGGGGAGACCTTCGAAGCTGCTGCTGAGGAGAAGGATAAGAAGGAGGAGAGTCAAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

160

Amino Acids

17.18

Weight (kDa)

6.16

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 30 - 85 3.3e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AciI CCGC 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 225, 359
AgsI TTSAA 3 cut(s) 203, 319, 341
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 206, 412, 437, 476
AluI AGCT 4 cut(s) 206, 412, 437, 476
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 419
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 3 cut(s) 215, 437, 440
AspS9I GGNCC 2 cut(s) 296, 403
AsuC2I CCSGG 2 cut(s) 353, 354
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 432
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 202, 424, 427
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 2 cut(s) 353, 354
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 2 cut(s) 276, 326
BisI GCNGC 3 cut(s) 216, 438, 441
BlsI GCNGC 3 cut(s) 217, 439, 442
Bme1390I CCNGG 3 cut(s) 308, 353, 354
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 296, 403
BmiI GGNNCC 3 cut(s) 297, 373, 405
BmrFI CCNGG 3 cut(s) 308, 353, 354
Bpu10I CCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 353, 354
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 351, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 359
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 351, 352
BseGI GGATG 2 cut(s) 172, 394
BseLI CCNNNNNNNGG 2 cut(s) 225, 359
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 5 cut(s) 61, 161, 234, 461, 479
BseXI GCAGC 3 cut(s) 202, 424, 427
BseYI CCCAGC 1 cut(s) 419
BshFI GGCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 225, 359
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 107
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 297, 373, 405
BspT104I TTCGAA 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 419
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 351, 352
Bst2UI CCWGG 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 444, 480
BstF5I GGATG 2 cut(s) 172, 394
BstMAI GTCTC 1 cut(s) 419
BstMWI GCNNNNNNNGC 3 cut(s) 137, 212, 371
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 3 cut(s) 306, 351, 352
BstV1I GCAGC 3 cut(s) 202, 424, 427
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 172, 394
BtsIMutI CAGTG 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 296, 403
Cfr9I CCCGGG 1 cut(s) 352
CviAII CATG 1 cut(s) 43
CviJI RGCY 9 cut(s) 11, 62, 206, 288, 298, 374, 412, 437, 476
CviKI_1 RGCY 9 cut(s) 11, 62, 206, 288, 298, 374, 412, 437, 476
DdeI CTNAG 2 cut(s) 444, 480
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 46
FaiI YATR 3 cut(s) 44, 158, 188
FaqI GGGAC 1 cut(s) 389
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 216, 438, 441
FokI GGATG 2 cut(s) 179, 401
Fsp4HI GCNGC 3 cut(s) 216, 438, 441
FspBI CTAG 2 cut(s) 276, 326
GluI GCNGC 3 cut(s) 216, 438, 441
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 1 cut(s) 298
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 46
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 204, 474
HinfI GANTC 1 cut(s) 469
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 67, 154
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 67, 154
HpyAV CCTTC 4 cut(s) 52, 439, 445, 454
HpyCH4V TGCA 2 cut(s) 140, 262
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 212, 371
HpyF3I CTNAG 2 cut(s) 444, 480
Hsp92II CATG 1 cut(s) 46
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 202, 424, 427
MaeI CTAG 2 cut(s) 276, 326
MboII GAAGA 3 cut(s) 16, 67, 331
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 478
MnlI CCTC 9 cut(s) 39, 119, 139, 142, 255, 379, 394, 439, 457
MseI TTAA 1 cut(s) 162
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 3 cut(s) 308, 353, 354
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 137, 212, 371
NciI CCSGG 2 cut(s) 353, 354
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 3 cut(s) 297, 373, 405
NspV TTCGAA 1 cut(s) 432
PctI GAATGC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 3 cut(s) 217, 439, 442
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PpuMI RGGWCCY 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 3 cut(s) 297, 373, 405
PspPI GGNCC 2 cut(s) 296, 403
PspPPI RGGWCCY 1 cut(s) 403
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 216, 438, 441
Sau96I GGNCC 2 cut(s) 296, 403
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 3 cut(s) 308, 353, 354
SduI GDGCHC 1 cut(s) 107
SetI ASST 9 cut(s) 153, 208, 277, 309, 405, 414, 431, 439, 478
SfuI TTCGAA 1 cut(s) 432
SinI GGWCC 1 cut(s) 403
SmaI CCCGGG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 1 cut(s) 378
SspMI CTAG 2 cut(s) 276, 326
StyD4I CCNGG 3 cut(s) 306, 351, 352
TaqI TCGA 2 cut(s) 144, 432
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 31
TseI GCWGC 3 cut(s) 215, 437, 440
TspDTI ATGAA 2 cut(s) 17, 175
TspMI CCCGGG 1 cut(s) 352
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 403
XmaI CCCGGG 1 cut(s) 352
XspI CTAG 2 cut(s) 276, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.