Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0011463

Physical Location & Seq

Genomic Coordinates Reverse (-)

171172 .. 175524

Gene Structure 4353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgacgcccattgggtttgaagttactatgctgggtttcgacctacttttggaggaggaagaagatgatttgtttatatttcattacgaactccaaaacccaaagatgaatcgggagaaacttatgaagatggctggtgctgttcgcactggtggaaagggtagcatgaggagaaagaagaaggctgttcacaagacaaccaccacagatgacaaaagacttcagagcaccctcaagagaataggggtgaatgctattcctgcaatcgaggaggtcaacatatttaaggatgatgtagttattcagttcataaatcctaaagttcaagcttctattgctgccaacacttgggttgttagtggttctcctcaaacaaagaagttgcaggatattctacctagtattatcagtcacttggggccagataacttggacaacttgaagaaactagcagagcagtttcaaaagcaatcccctggtgctggtgctggtggagccactgccccagaggatgatgatgatgaggtcccagagcttgttgctggggagaccttcgaagctgctgccgaggggaaggataagaaggaggagagtcaagcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

NAC

Protein Analysis

201

Amino Acids

22.04

Weight (kDa)

5.12

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17880 AT1G73230
fragaria_vesca	FvH4_5g18511 FvH4_5g18511
malus_domestica	MD06G1239900.v1.1 MD14G1246300.v1.1
prunus_persica	Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1
pyrus_communis	pycom06g21550 pycom14g20710
rosa_chinensis	RchiOBHm_Chr7g0177001
rosa_laevigata	RLG00000005565
rosa_multiflora	Rmu_sc0005310.1_g000032
rosa_roxburghii	Rroxscaffold_3G00276180
rosa_samantha	Rh7AG002300 Rh7BG002600 Rh7CG001900 Rh7DG002500
rosa_wichuraiana	Rw7G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	49, 348, 482
AgsI	TTSAA	4 cut(s)	20, 326, 442, 464
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	4 cut(s)	329, 535, 560, 599
AluI	AGCT	4 cut(s)	329, 535, 560, 599
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	542
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	3 cut(s)	338, 560, 563
AspS9I	GGNCC	2 cut(s)	419, 526
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	325, 547, 550
BccI	CCATC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	399, 449
BisI	GCNGC	3 cut(s)	339, 561, 564
BlsI	GCNGC	3 cut(s)	340, 562, 565
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	419, 526
BmiI	GGNNCC	3 cut(s)	420, 496, 528
BmrFI	CCNGG	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	475, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 348, 482
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	475, 567
BseGI	GGATG	2 cut(s)	295, 517
BseLI	CCNNNNNNNGG	3 cut(s)	49, 348, 482
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	5 cut(s)	68, 184, 284, 357, 602
BseXI	GCAGC	3 cut(s)	325, 547, 550
BseYI	CCCAGC	2 cut(s)	31, 542
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	3 cut(s)	49, 348, 482
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	421
Bso31I	GGTCTC	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	420, 496, 528
BspT104I	TTCGAA	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	475, 567
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	295, 517
BstMAI	GTCTC	1 cut(s)	542
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 335, 494
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	325, 547, 550
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	295, 517
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	147, 498
Cfr13I	GGNCC	2 cut(s)	419, 526
CseI	GACGC	1 cut(s)	13
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	8 cut(s)	134, 185, 329, 421, 497, 535, 560, 599
CviKI_1	RGCY	8 cut(s)	134, 185, 329, 421, 497, 535, 560, 599
DdeI	CTNAG	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	475
FaeI	CATG	1 cut(s)	169
FaiI	YATR	6 cut(s)	29, 77, 125, 167, 281, 311
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	339, 561, 564
FokI	GGATG	2 cut(s)	302, 524
Fsp4HI	GCNGC	3 cut(s)	339, 561, 564
FspBI	CTAG	2 cut(s)	399, 449
GluI	GCNGC	3 cut(s)	339, 561, 564
GsaI	CCCAGC	2 cut(s)	35, 546
HaeIII	GGCC	1 cut(s)	421
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	327, 597
HinfI	GANTC	2 cut(s)	109, 592
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	190, 277
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	113, 235
Hpy8I	GTNNAC	2 cut(s)	190, 277
HpyAV	CCTTC	4 cut(s)	175, 562, 568, 577
HpyCH4V	TGCA	2 cut(s)	263, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 335, 494
HpyF3I	CTNAG	1 cut(s)	603
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	3 cut(s)	325, 547, 550
MaeI	CTAG	2 cut(s)	399, 449
MaeIII	GTNAC	2 cut(s)	22, 410
MboII	GAAGA	5 cut(s)	71, 74, 139, 190, 454
MhlI	GDGCHC	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	601
MseI	TTAA	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	260, 335, 494
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	3 cut(s)	420, 496, 528
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	555
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	109
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	340, 562, 565
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
PpuMI	RGGWCCY	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	2 cut(s)	31, 542
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	420, 496, 528
PspPI	GGNCC	2 cut(s)	419, 526
PspPPI	RGGWCCY	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	339, 561, 564
Sau96I	GGNCC	2 cut(s)	419, 526
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	9 cut(s)	45, 276, 331, 400, 528, 537, 554, 562, 601
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SspMI	CTAG	2 cut(s)	399, 449
StyD4I	CCNGG	1 cut(s)	475
TaqI	TCGA	3 cut(s)	39, 267, 555
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	154, 505
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	338, 560, 563
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	71, 122, 140, 298
TspRI	CASTG	2 cut(s)	154, 505
Van91I	CCANNNNNTGG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	526
XspI	CTAG	2 cut(s)	399, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.