Rroxscaffold_3G00276180
NAC Family

Nascent polypeptide-associated complex subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011463
Physical Location & Seq
Reverse (-)
67433645 .. 67436315
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276180.1

Sequence Viewer

Length: 495 bp
ATGAATCGGGAGAAACTAATGAAGATGGCTGGTGCTGTTCGCACTGGTGGAAAGGGTAGCATGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACCACCACAGATGACAAAAGGCTTCAGAGCACCCTCAAGAGAATAGGGGTGAATGCTATTCCTGCAATCGAGGAGGTCAACATATTTAAGGATGATGTAGTTATTCAGTTCATAAATCCTAAAGTTCAAGCTTCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAGTTGCAGGATATTCTACCTAGTATTATCAGCCACTTGGGCCCAGATAACTTGGACAACTTGAAGAAACTAGCAGAGCAGTTTCAAAAGCAATCCCCTGGTGCTGGTGGAGCCACTGCCCCAGAGGATGATGATGATGAGGTCCCAGAGCTTGTTGCTGGGGAGACCTTCGAAGCTGCTGCCGAGGAGAAGGATAAGAAGGAGGAGAGTCAAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

164

Amino Acids

17.82

Weight (kDa)

6.76

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 36 - 91 3.5e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 243, 377
AgsI TTSAA 3 cut(s) 221, 337, 359
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 4 cut(s) 224, 424, 449, 488
AluI AGCT 4 cut(s) 224, 424, 449, 488
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 431
AoxI GGCC 1 cut(s) 313
ApaI GGGCCC 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 233, 449, 452
AspS9I GGNCC 3 cut(s) 313, 314, 415
AsuHPI GGTGA 1 cut(s) 154
AsuII TTCGAA 1 cut(s) 444
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 220, 436, 439
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 2 cut(s) 294, 344
BglI GCCNNNNNGGC 1 cut(s) 312
BisI GCNGC 3 cut(s) 234, 450, 453
BlsI GCNGC 3 cut(s) 235, 451, 454
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 3 cut(s) 313, 314, 415
BmiI GGNNCC 3 cut(s) 315, 385, 417
BmrFI CCNGG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 370, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 377
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 370, 456
BseGI GGATG 2 cut(s) 190, 406
BseLI CCNNNNNNNGG 2 cut(s) 243, 377
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 5 cut(s) 79, 179, 252, 473, 491
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 3 cut(s) 220, 436, 439
BseYI CCCAGC 1 cut(s) 431
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 243, 377
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 315
Bso31I GGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 444
Bsp120I GGGCCC 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 125, 317
BspANI GGCC 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 315, 385, 417
BspT104I TTCGAA 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 431
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 370, 456
Bst2UI CCWGG 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 190, 406
BstMAI GTCTC 1 cut(s) 431
BstMWI GCNNNNNNNGC 4 cut(s) 155, 230, 312, 383
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 220, 436, 439
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 190, 406
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 42, 387
Cfr13I GGNCC 3 cut(s) 313, 314, 415
CviAII CATG 1 cut(s) 61
DdeI CTNAG 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 176, 206
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 234, 450, 453
FokI GGATG 2 cut(s) 197, 413
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 234, 450, 453
FspBI CTAG 2 cut(s) 294, 344
GluI GCNGC 3 cut(s) 234, 450, 453
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 1 cut(s) 315
Hin1II CATG 1 cut(s) 64
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 222, 486
HinfI GANTC 2 cut(s) 4, 481
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 85, 172
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 8, 130
Hpy8I GTNNAC 2 cut(s) 85, 172
HpyAV CCTTC 4 cut(s) 70, 451, 457, 466
HpyCH4V TGCA 2 cut(s) 158, 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 230, 312, 383
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 1 cut(s) 64
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 3 cut(s) 220, 436, 439
MaeI CTAG 2 cut(s) 294, 344
MboII GAAGA 3 cut(s) 34, 85, 349
MhlI GDGCHC 2 cut(s) 125, 317
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 9 cut(s) 57, 137, 157, 160, 273, 391, 406, 451, 469
MseI TTAA 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 4 cut(s) 155, 230, 312, 383
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 315, 385, 417
NmeAIII GCCGAG 1 cut(s) 481
NspV TTCGAA 1 cut(s) 444
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 235, 451, 454
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PpuMI RGGWCCY 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 315, 385, 417
PspOMI GGGCCC 1 cut(s) 313
PspPI GGNCC 3 cut(s) 313, 314, 415
PspPPI RGGWCCY 1 cut(s) 415
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 234, 450, 453
Sau96I GGNCC 3 cut(s) 313, 314, 415
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 125, 317
SetI ASST 8 cut(s) 171, 226, 295, 417, 426, 443, 451, 490
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SspMI CTAG 2 cut(s) 294, 344
StyD4I CCNGG 1 cut(s) 370
TaqI TCGA 2 cut(s) 162, 444
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 49, 394
TseI GCWGC 3 cut(s) 233, 449, 452
TspDTI ATGAA 3 cut(s) 17, 35, 193
TspRI CASTG 2 cut(s) 49, 394
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 415
XspI CTAG 2 cut(s) 294, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.