Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011463

Physical Location & Seq

Genomic Coordinates Reverse (-)

24125588 .. 24127695

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21550.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATTGGGGATGGATTATTGAGCAGAGCACCCACTATGAATAGGGAGAAACTTATGAAGATGGCTGGTGCGGTTCGCACTGGTGGAAAGGGCAGCGTGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACTACCACAGACGACAAACGGCTTCAGAGCACCCTCAAGAGGATAGGGGTGAATGCTATTCCTGCAATCGAGGAAGTTAACATATTCAAGGATGATGTAGTTATCCAGTTCCTAAACCCCAAAGTTCAAGCTTCAATTGCTGCCAACACCTGGGTTGTTAGCGGTTCTCCTCAAACAAAGAAGTTGCAAGATATTCTTCCCAGTATTATCAGCCACTTGGGGCCAGATAACTTGGACAATTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGGTGGAGCCACTGCACAAGAGGACGATGATGATGAGGTCCCTGAGCTTGTGGCCGGGGAGACCTTTGAAGCTGCTGCGGAGGAGAAGGACAAGGAGGAGAATCAAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

NAC

Protein Analysis

176

Amino Acids

18.92

Weight (kDa)

6.17

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17880 AT1G73230
fragaria_vesca	FvH4_5g18511 FvH4_5g18511
malus_domestica	MD06G1239900.v1.1 MD14G1246300.v1.1
prunus_persica	Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1
pyrus_communis	pycom06g21550 pycom14g20710
rosa_chinensis	RchiOBHm_Chr7g0177001
rosa_laevigata	RLG00000005565
rosa_multiflora	Rmu_sc0005310.1_g000032
rosa_roxburghii	Rroxscaffold_3G00276180
rosa_samantha	Rh7AG002300 Rh7BG002600 Rh7CG001900 Rh7DG002500
rosa_wichuraiana	Rw7G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	279
AciI	CCGC	3 cut(s)	71, 291, 491
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	410
AfiI	CCNNNNNNNGG	3 cut(s)	168, 279, 413
AgsI	TTSAA	5 cut(s)	217, 257, 264, 373, 482
AjnI	CCWGG	2 cut(s)	278, 406
AluBI	AGCT	4 cut(s)	260, 460, 485, 521
AluI	AGCT	4 cut(s)	260, 460, 485, 521
Alw21I	GWGCWC	2 cut(s)	31, 161
Alw26I	GTCTC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	350, 465
ApeKI	GCWGC	4 cut(s)	93, 269, 485, 488
AspS9I	GGNCC	2 cut(s)	350, 451
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	451
Bbv12I	GWGCWC	2 cut(s)	31, 161
BbvI	GCAGC	4 cut(s)	105, 256, 472, 475
BccI	CCATC	2 cut(s)	5, 55
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	280, 408
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	467
BisI	GCNGC	4 cut(s)	94, 270, 486, 489
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	4 cut(s)	95, 271, 487, 490
Bme1390I	CCNGG	3 cut(s)	280, 408, 469
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	350, 451
BmiI	GGNNCC	3 cut(s)	351, 421, 453
BmrFI	CCNGG	3 cut(s)	280, 408, 469
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	279, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 279, 413
Bse1I	ACTGG	3 cut(s)	85, 235, 330
BseBI	CCWGG	2 cut(s)	280, 408
BseDI	CCNNGG	2 cut(s)	279, 468
BseGI	GGATG	2 cut(s)	16, 226
BseLI	CCNNNNNNNGG	3 cut(s)	168, 279, 413
BseMII	CTCAG	2 cut(s)	375, 447
BseNI	ACTGG	3 cut(s)	85, 235, 330
BseRI	GAGGAG	4 cut(s)	115, 288, 509, 524
BseXI	GCAGC	4 cut(s)	105, 256, 472, 475
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	352, 467
BsiHKAI	GWGCWC	2 cut(s)	31, 161
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	168, 279, 413
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	352, 467
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	31, 161
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	3 cut(s)	71, 291, 491
BspANI	GGCC	2 cut(s)	352, 467
BspCNI	CTCAG	2 cut(s)	376, 448
BspLI	GGNNCC	3 cut(s)	351, 421, 453
BspTNI	GGTCTC	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	85, 235, 330
BssECI	CCNNGG	2 cut(s)	279, 468
Bst2UI	CCWGG	2 cut(s)	280, 408
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	384, 456, 525
BstF5I	GGATG	2 cut(s)	16, 226
BstMAI	GTCTC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 266, 410, 419
BstNI	CCWGG	2 cut(s)	280, 408
BstSCI	CCNGG	3 cut(s)	278, 406, 467
BstV1I	GCAGC	4 cut(s)	105, 256, 472, 475
BsuRI	GGCC	2 cut(s)	352, 467
BtsCI	GGATG	2 cut(s)	16, 226
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	78, 423
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	350, 451
CsiI	ACCWGGT	1 cut(s)	406
DdeI	CTNAG	3 cut(s)	384, 456, 525
DraIII	CACNNNGTG	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	278, 406
FaiI	YATR	3 cut(s)	38, 56, 212
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	94, 270, 486, 489
FokI	GGATG	2 cut(s)	23, 233
Fsp4HI	GCNGC	4 cut(s)	94, 270, 486, 489
GluI	GCNGC	4 cut(s)	94, 270, 486, 489
HaeIII	GGCC	2 cut(s)	352, 467
HapII	CCGG	1 cut(s)	468
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	258, 519
HinfI	GANTC	1 cut(s)	514
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	121, 208
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	166, 394
Hpy8I	GTNNAC	2 cut(s)	121, 208
HpyAV	CCTTC	2 cut(s)	106, 493
HpyCH4V	TGCA	3 cut(s)	194, 316, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 266, 410, 419
HpyF3I	CTNAG	3 cut(s)	384, 456, 525
KspAI	GTTAAC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	4 cut(s)	105, 256, 472, 475
MabI	ACCWGGT	1 cut(s)	406
MboII	GAAGA	4 cut(s)	70, 121, 317, 385
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	31, 161
MluCI	AATT	2 cut(s)	264, 367
MnlI	CCTC	9 cut(s)	93, 162, 173, 193, 309, 427, 442, 487, 502
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	280, 408, 469
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	280, 408
MwoI	GCNNNNNNNGC	4 cut(s)	191, 266, 410, 419
NciI	CCSGG	1 cut(s)	469
NlaIV	GGNNCC	3 cut(s)	351, 421, 453
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	95, 271, 487, 490
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	278, 406
PspGI	CCWGG	2 cut(s)	278, 406
PspN4I	GGNNCC	3 cut(s)	351, 421, 453
PspPI	GGNCC	2 cut(s)	350, 451
PspPPI	RGGWCCY	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	94, 270, 486, 489
Sau96I	GGNCC	2 cut(s)	350, 451
ScrFI	CCNGG	3 cut(s)	280, 408, 469
SduI	GDGCHC	2 cut(s)	31, 161
SetI	ASST	8 cut(s)	262, 281, 409, 453, 462, 479, 487, 523
SexAI	ACCWGGT	1 cut(s)	406
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	264, 367
SsiI	CCGC	3 cut(s)	71, 291, 491
StyD4I	CCNGG	3 cut(s)	278, 406, 467
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	264, 367
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	85, 430
TseI	GCWGC	4 cut(s)	93, 269, 485, 488
TspDTI	ATGAA	2 cut(s)	53, 71
TspRI	CASTG	2 cut(s)	85, 430
Van91I	CCANNNNNTGG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.