Rh7CG001900
NAC Family

Nascent polypeptide-associated complex subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011463
Physical Location & Seq
Forward (+)
215171 .. 217738
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG001900.1

Sequence Viewer

Length: 501 bp
ATGAATCGGGAGAAACTTATGAAGATGGCTGGTGCTGTTCGCACTGGTGGAAAGGGTAGCATGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACCACCACAGATGACAAAAGACTTCAGAGCACCCTCAAGAGAATAGGGGTGAATGCTATTCCTGCAATCGAGGAGGTCAACATATTTAAGGATGATGTAGTTATTCAGTTCATAAATCCTAAAGTTCAAGCTTCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAGTTGCAGGATATTCTACCTAGTATTATCAGCCACTTGGGGCCAGATAACTTGGACAACTTGAAGAAACTAGCAGAGCAGTTTCAAAAGCAATCCCCTGGTGCCGGTGCTGGTGGAGCCAGTGCCCCAGAGGATGATGATGATGAGGTCCCAGAGCTTGTTGCTGGGGAGACCTTCGAAGCTGCTGCCGAGGAGAAGGATAAGAAGGAGGAGAGTCAAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

166

Amino Acids

17.94

Weight (kDa)

6.76

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 36 - 91 3.6e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 243, 377
AgsI TTSAA 3 cut(s) 221, 337, 359
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 4 cut(s) 224, 430, 455, 494
AluI AGCT 4 cut(s) 224, 430, 455, 494
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 437
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 233, 455, 458
AspS9I GGNCC 2 cut(s) 314, 421
AsuHPI GGTGA 1 cut(s) 154
AsuII TTCGAA 1 cut(s) 450
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 220, 442, 445
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 294, 344
BisI GCNGC 3 cut(s) 234, 456, 459
BlsI GCNGC 3 cut(s) 235, 457, 460
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 314, 421
BmiI GGNNCC 4 cut(s) 315, 376, 391, 423
BmrFI CCNGG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 370, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 377
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 49, 393
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 370, 462
BseGI GGATG 2 cut(s) 190, 412
BseLI CCNNNNNNNGG 2 cut(s) 243, 377
BseNI ACTGG 2 cut(s) 49, 393
BseRI GAGGAG 5 cut(s) 79, 179, 252, 479, 497
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 3 cut(s) 220, 442, 445
BseYI CCCAGC 1 cut(s) 437
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 243, 377
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 125, 400
BspANI GGCC 1 cut(s) 316
BspLI GGNNCC 4 cut(s) 315, 376, 391, 423
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 2 cut(s) 49, 393
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 370, 462
Bst2UI CCWGG 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 450
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 190, 412
BstMAI GTCTC 1 cut(s) 437
BstMWI GCNNNNNNNGC 3 cut(s) 155, 230, 389
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 3 cut(s) 220, 442, 445
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 2 cut(s) 190, 412
BtsIMutI CAGTG 2 cut(s) 42, 400
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 314, 421
CviAII CATG 1 cut(s) 61
CviJI RGCY 9 cut(s) 29, 80, 224, 306, 316, 392, 430, 455, 494
CviKI_1 RGCY 9 cut(s) 29, 80, 224, 306, 316, 392, 430, 455, 494
DdeI CTNAG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 20, 62, 176, 206
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 234, 456, 459
FokI GGATG 2 cut(s) 197, 419
Fsp4HI GCNGC 3 cut(s) 234, 456, 459
FspBI CTAG 2 cut(s) 294, 344
GluI GCNGC 3 cut(s) 234, 456, 459
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 378
Hin1II CATG 1 cut(s) 64
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 222, 492
HinfI GANTC 2 cut(s) 4, 487
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 85, 172
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 8, 130
Hpy8I GTNNAC 2 cut(s) 85, 172
HpyAV CCTTC 4 cut(s) 70, 457, 463, 472
HpyCH4V TGCA 2 cut(s) 158, 280
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 230, 389
HpyF3I CTNAG 1 cut(s) 498
Hsp92II CATG 1 cut(s) 64
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 3 cut(s) 220, 442, 445
MaeI CTAG 2 cut(s) 294, 344
MboII GAAGA 3 cut(s) 34, 85, 349
MhlI GDGCHC 2 cut(s) 125, 400
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 9 cut(s) 57, 137, 157, 160, 273, 397, 412, 457, 475
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 155, 230, 389
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 4 cut(s) 315, 376, 391, 423
NmeAIII GCCGAG 1 cut(s) 487
NspV TTCGAA 1 cut(s) 450
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 235, 457, 460
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 4 cut(s) 315, 376, 391, 423
PspPI GGNCC 2 cut(s) 314, 421
PspPPI RGGWCCY 1 cut(s) 421
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 234, 456, 459
Sau96I GGNCC 2 cut(s) 314, 421
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 125, 400
SetI ASST 8 cut(s) 171, 226, 295, 423, 432, 449, 457, 496
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SspMI CTAG 2 cut(s) 294, 344
StyD4I CCNGG 1 cut(s) 370
TaqI TCGA 2 cut(s) 162, 450
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 49, 400
TseI GCWGC 3 cut(s) 233, 455, 458
TspDTI ATGAA 3 cut(s) 17, 35, 193
TspRI CASTG 2 cut(s) 49, 400
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 421
XspI CTAG 2 cut(s) 294, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.