Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011463

Physical Location & Seq

Genomic Coordinates Reverse (-)

21707654 .. 21708963

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTGGTGCGGTTCGCACTGGTGGAAAGGGCAGCGTGAGGAGGAAGAAGAAGGCTGTTCACAAGACAACCACCACAGATGACAAAAGGCTTCAGAGCACCCTTAAGAGAATAGGGGTGAATGCTATTCCTGCTATCGAGGAAGTTAACATATTTAAGGATGATGTAGTTATCCAGTTCATAAACCCCAAAGTTCAAGCTTCAATTGCTGCCAACACTTGGGTTGTTAGTGGCTCTCCTCAAACAAAGAAGTTGCAAGATATTCTTCCCAGTATTATCAGCCACTTGGGGCCAGATAACTTGGACAATTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGGTGGAGCCGCTGCACAAGAGGACGATGATGATGAGGTTCCCGAGCTTGTGGCTGGGGAAACATTTGAAGCCGCTGCAGAGGAGAAGAACAAGGAGGAGAATCAAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

NAC

Protein Analysis

156

Amino Acids

16.64

Weight (kDa)

5.75

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17880 AT1G73230
fragaria_vesca	FvH4_5g18511 FvH4_5g18511
malus_domestica	MD06G1239900.v1.1 MD14G1246300.v1.1
prunus_persica	Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1
pyrus_communis	pycom06g21550 pycom14g20710
rosa_chinensis	RchiOBHm_Chr7g0177001
rosa_laevigata	RLG00000005565
rosa_multiflora	Rmu_sc0005310.1_g000032
rosa_roxburghii	Rroxscaffold_3G00276180
rosa_samantha	Rh7AG002300 Rh7BG002600 Rh7CG001900 Rh7DG002500
rosa_wichuraiana	Rw7G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AciI	CCGC	3 cut(s)	11, 363, 426
AcuI	CTGAAG	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	219, 353
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	197, 204, 313, 422
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	3 cut(s)	200, 400, 461
AluI	AGCT	3 cut(s)	200, 400, 461
Alw21I	GWGCWC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	4 cut(s)	33, 209, 365, 428
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	4 cut(s)	45, 196, 352, 415
BciT130I	CCWGG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	6 cut(s)	34, 210, 363, 366, 426, 429
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	6 cut(s)	35, 211, 364, 367, 427, 430
Bme1390I	CCNGG	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	3 cut(s)	291, 361, 393
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 353
Bse1I	ACTGG	3 cut(s)	25, 175, 270
BseBI	CCWGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	219, 353
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	25, 175, 270
BseRI	GAGGAG	4 cut(s)	55, 228, 449, 464
BseXI	GCAGC	4 cut(s)	45, 196, 352, 415
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	219, 353
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	3 cut(s)	11, 363, 426
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	291, 361, 393
BspMAI	CTGCAG	1 cut(s)	433
BspTI	CTTAAG	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	25, 175, 270
Bst2UI	CCWGG	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	324, 465
BstF5I	GGATG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 206, 350, 359
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	4 cut(s)	45, 196, 352, 415
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	290
CsiI	ACCWGGT	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	324, 465
DraIII	CACNNNGTG	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	346
FaiI	YATR	2 cut(s)	152, 182
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
Fnu4HI	GCNGC	6 cut(s)	34, 210, 363, 366, 426, 429
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	6 cut(s)	34, 210, 363, 366, 426, 429
GluI	GCNGC	6 cut(s)	34, 210, 363, 366, 426, 429
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	198, 459
HinfI	GANTC	1 cut(s)	454
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	61, 148
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	334, 395
Hpy8I	GTNNAC	2 cut(s)	61, 148
HpyAV	CCTTC	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	256, 368, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 206, 350, 359
HpyF3I	CTNAG	2 cut(s)	324, 465
KspAI	GTTAAC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	4 cut(s)	45, 196, 352, 415
MabI	ACCWGGT	1 cut(s)	346
MboII	GAAGA	5 cut(s)	58, 61, 257, 325, 451
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	2 cut(s)	204, 307
MnlI	CCTC	8 cut(s)	33, 36, 133, 249, 367, 382, 427, 442
MseI	TTAA	3 cut(s)	105, 147, 156
MspA1I	CMGCKG	2 cut(s)	365, 428
MspCI	CTTAAG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	131, 206, 350, 359
NlaIV	GGNNCC	3 cut(s)	291, 361, 393
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	454
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	35, 211, 364, 367, 427, 430
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	291, 361, 393
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	433
SaqAI	TTAA	3 cut(s)	105, 147, 156
SatI	GCNGC	6 cut(s)	34, 210, 363, 366, 426, 429
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	5 cut(s)	202, 349, 393, 402, 463
SexAI	ACCWGGT	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	204, 307
SsiI	CCGC	3 cut(s)	11, 363, 426
StyD4I	CCNGG	1 cut(s)	346
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	204, 307
TauI	GCSGC	2 cut(s)	365, 428
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	105, 147, 156
Tru9I	TTAA	3 cut(s)	105, 147, 156
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	4 cut(s)	33, 209, 365, 428
TspDTI	ATGAA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	219
Vha464I	CTTAAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.