AT1G73230
NAC Family

nascent polypeptide-associated complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011463
Physical Location & Seq
Reverse (-)
27540228 .. 27541952
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73230.1

Sequence Viewer

Length: 498 bp
ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACAGTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAGAGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTTAAGGATGATGTAGTCATTCAGTTCATTAACCCTAAAGTTCAAGCTTCAATTGCTGCTAACACATGGGTTGTGAGTGGTACACCACAGACGAAAAAATTGCAAGACATTCTTCCTCAGATTATCAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAGAAACAAGCTCCAGGTGCAGGTGATGTCCCAGCAACAATCCAAGAAGAGGACGATGATGATGATGTCCCAGATCTTGTAGTGGGAGAGACTTTCGAGACCCCTGCTACTGAAGAGGCTCCCAAAGCTGCTGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

165

Amino Acids

18.0

Weight (kDa)

5.91

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 36 - 91 5.5e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 368
AciI CCGC 3 cut(s) 40, 48, 156
AcuI CTGAAG 2 cut(s) 356, 489
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 2 cut(s) 377, 406
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 164, 221, 228
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 4 cut(s) 224, 343, 368, 485
AluI AGCT 4 cut(s) 224, 343, 368, 485
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 440, 449
ApeKI GCWGC 3 cut(s) 233, 485, 488
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 343
AvaII GGWCC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 220, 472, 475
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 443, 477
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 440, 449
BfaI CTAG 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 430
BisI GCNGC 3 cut(s) 234, 486, 489
BlsI GCNGC 3 cut(s) 235, 487, 490
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 116, 477
BmrFI CCNGG 1 cut(s) 372
BmtI GCTAGC 1 cut(s) 347
BpmI CTGGAG 2 cut(s) 101, 354
BsaI GGTCTC 1 cut(s) 449
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 406
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 377, 406
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 220, 472, 475
BseYI CCCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 3 cut(s) 70, 371, 410
BslI CCNNNNNNNGG 2 cut(s) 377, 406
BsmAI GTCTC 2 cut(s) 440, 449
BsmFI GGGAC 3 cut(s) 70, 371, 410
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 3 cut(s) 40, 48, 156
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 116, 477
BspMI ACCTGC 1 cut(s) 368
BspOI GCTAGC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 37, 61
Bst6I CTCTTC 2 cut(s) 399, 465
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 294, 495
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 440, 449
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 4 cut(s) 230, 349, 374, 482
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 220, 472, 475
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 33, 42
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 243
CviJI RGCY 9 cut(s) 29, 80, 115, 224, 306, 343, 368, 476, 485
CviKI_1 RGCY 9 cut(s) 29, 80, 115, 224, 306, 343, 368, 476, 485
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 2 cut(s) 294, 495
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 399, 465
EarI CTCTTC 2 cut(s) 399, 465
EciI GGCGGA 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 356, 489
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 1 cut(s) 246
FaiI YATR 1 cut(s) 244
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 3 cut(s) 70, 371, 410
FatI CATG 1 cut(s) 242
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 234, 486, 489
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 234, 486, 489
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 234, 486, 489
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 2 cut(s) 101, 354
Hin1II CATG 1 cut(s) 246
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 1 cut(s) 141
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 85, 172, 260
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 3 cut(s) 118, 358, 454
Hpy8I GTNNAC 3 cut(s) 85, 172, 260
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 37, 61
HpyCH4V TGCA 2 cut(s) 280, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 349, 374, 482
HpyF3I CTNAG 2 cut(s) 294, 495
Hsp92II CATG 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 3 cut(s) 120, 373, 481
Lsp1109I GCAGC 3 cut(s) 220, 472, 475
MaeI CTAG 1 cut(s) 344
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 8 cut(s) 34, 78, 85, 176, 281, 349, 416, 482
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 4 cut(s) 145, 228, 275, 353
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 4 cut(s) 105, 303, 400, 466
MseI TTAA 4 cut(s) 129, 171, 180, 207
MspCI CTTAAG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 4 cut(s) 230, 349, 374, 482
NdeII GATC 1 cut(s) 430
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 2 cut(s) 116, 477
PaqCI CACCTGC 1 cut(s) 368
PkrI GCNGC 3 cut(s) 235, 487, 490
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 116, 477
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 4 cut(s) 129, 171, 180, 207
SatI GCNGC 3 cut(s) 234, 486, 489
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 125
SetI ASST 7 cut(s) 226, 336, 345, 370, 376, 382, 487
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 4 cut(s) 145, 228, 275, 353
SsiI CCGC 3 cut(s) 40, 48, 156
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 37, 61
TaqI TCGA 1 cut(s) 453
TasI AATT 4 cut(s) 145, 228, 275, 353
Tru1I TTAA 4 cut(s) 129, 171, 180, 207
Tru9I TTAA 4 cut(s) 129, 171, 180, 207
TscAI CASTG 2 cut(s) 40, 49
TseI GCWGC 3 cut(s) 233, 485, 488
TspDTI ATGAA 3 cut(s) 17, 35, 193
TspRI CASTG 2 cut(s) 40, 49
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 314
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.