RLG00000005565
NAC Family

Nascent polypeptide-associated complex subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011463
Physical Location & Seq
Reverse (-)
68562274 .. 68565242
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005565

Sequence Viewer

Length: 552 bp
ATGTCATCGAATGCAGACTCCAAATTAGTTTTAGAACTCCAAAACCCAAAGATGAATCGGGAGAAACTTATGAAGATGGCTGGTGCTGTTCGCACTGGTGGAAAGGGTAGCATGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACCACCACAGATGACAAAAGACTTCAGAGCACCCTCAAGAGAATAGGGGTGAATGCTATTCCTGCAATCGAGGAGGTCAACATATTTAAGGATGATGTAGTTATTCAGTTCATAAATCCTAAAGTTCAAGCTTCTATTGCTGCCAACACCTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAGTTGCAGGATATTCTACCTAGTATTATCAGCCACTTGGGGCCAGATAACTTGGACAACTTGAAGAAACTAGCAGAGCAGTTTCAAAAGCAATCACCTGGTGCTGGTGCTGGTGGAGCCACTGCCCCAGAGGATGATGATGATGAGGTCCCAGAGCTTGTTGCTGGGGAGACCTTTGAAGCTGCTGCCGAGGAGAAGGATAAGAAGGAGGAGAGTCAAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

184

Amino Acids

19.81

Weight (kDa)

6.76

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 53 - 108 4.3e-20 NAC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 294, 428
AgsI TTSAA 4 cut(s) 272, 388, 410, 503
AjnI CCWGG 2 cut(s) 293, 421
AluBI AGCT 4 cut(s) 275, 481, 506, 545
AluI AGCT 4 cut(s) 275, 481, 506, 545
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 488
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 284, 506, 509
AspS9I GGNCC 2 cut(s) 365, 472
AsuHPI GGTGA 2 cut(s) 205, 411
AvaII GGWCC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 271, 493, 496
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 295, 423
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 345, 395
BisI GCNGC 3 cut(s) 285, 507, 510
BlsI GCNGC 3 cut(s) 286, 508, 511
Bme1390I CCNGG 2 cut(s) 295, 423
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 365, 472
BmiI GGNNCC 3 cut(s) 366, 442, 474
BmrFI CCNGG 2 cut(s) 295, 423
BpuEI CTTGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 294, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 428
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 295, 423
BseDI CCNNGG 2 cut(s) 294, 513
BseGI GGATG 2 cut(s) 241, 463
BseLI CCNNNNNNNGG 2 cut(s) 294, 428
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 5 cut(s) 130, 230, 303, 530, 548
BseXI GCAGC 3 cut(s) 271, 493, 496
BseYI CCCAGC 1 cut(s) 488
BshFI GGCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 294, 428
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 2 cut(s) 16, 202
BsnI GGCC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 176
BspANI GGCC 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 366, 442, 474
BspTNI GGTCTC 1 cut(s) 488
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 294, 513
Bst2UI CCWGG 2 cut(s) 295, 423
BstDEI CTNAG 1 cut(s) 549
BstF5I GGATG 2 cut(s) 241, 463
BstMAI GTCTC 1 cut(s) 488
BstMWI GCNNNNNNNGC 3 cut(s) 206, 281, 440
BstNI CCWGG 2 cut(s) 295, 423
BstSCI CCNGG 2 cut(s) 293, 421
BstV1I GCAGC 3 cut(s) 271, 493, 496
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 241, 463
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 93, 444
Cfr13I GGNCC 2 cut(s) 365, 472
CsiI ACCWGGT 1 cut(s) 421
CviAII CATG 1 cut(s) 112
CviJI RGCY 9 cut(s) 80, 131, 275, 357, 367, 443, 481, 506, 545
CviKI_1 RGCY 9 cut(s) 80, 131, 275, 357, 367, 443, 481, 506, 545
DdeI CTNAG 1 cut(s) 549
DraIII CACNNNGTG 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 293, 421
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 71, 113, 227, 257
FaqI GGGAC 1 cut(s) 458
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 285, 507, 510
FokI GGATG 2 cut(s) 248, 470
Fsp4HI GCNGC 3 cut(s) 285, 507, 510
FspBI CTAG 2 cut(s) 345, 395
GluI GCNGC 3 cut(s) 285, 507, 510
GsaI CCCAGC 1 cut(s) 492
HaeIII GGCC 1 cut(s) 367
Hin1II CATG 1 cut(s) 115
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 2 cut(s) 273, 543
HinfI GANTC 3 cut(s) 17, 55, 538
HphI GGTGA 2 cut(s) 205, 411
Hpy166II GTNNAC 2 cut(s) 136, 223
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 59, 181
Hpy8I GTNNAC 2 cut(s) 136, 223
HpyAV CCTTC 3 cut(s) 121, 514, 523
HpyCH4V TGCA 3 cut(s) 14, 209, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 281, 440
HpyF3I CTNAG 1 cut(s) 549
Hsp92II CATG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 3 cut(s) 271, 493, 496
MabI ACCWGGT 1 cut(s) 421
MaeI CTAG 2 cut(s) 345, 395
MboII GAAGA 3 cut(s) 85, 136, 400
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 23
MlyI GAGTC 2 cut(s) 11, 547
MnlI CCTC 9 cut(s) 108, 188, 208, 211, 324, 448, 463, 508, 526
MseI TTAA 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 295, 423
Mva1269I GAATGC 2 cut(s) 16, 202
MvaI CCWGG 2 cut(s) 295, 423
MwoI GCNNNNNNNGC 3 cut(s) 206, 281, 440
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 366, 442, 474
NmeAIII GCCGAG 1 cut(s) 538
PctI GAATGC 2 cut(s) 16, 202
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 3 cut(s) 286, 508, 511
PleI GAGTC 2 cut(s) 11, 546
PpsI GAGTC 2 cut(s) 11, 546
PpuMI RGGWCCY 1 cut(s) 472
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 293, 421
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 2 cut(s) 293, 421
PspN4I GGNNCC 3 cut(s) 366, 442, 474
PspPI GGNCC 2 cut(s) 365, 472
PspPPI RGGWCCY 1 cut(s) 472
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 285, 507, 510
Sau96I GGNCC 2 cut(s) 365, 472
SchI GAGTC 2 cut(s) 11, 547
ScrFI CCNGG 2 cut(s) 295, 423
SduI GDGCHC 1 cut(s) 176
SexAI ACCWGGT 1 cut(s) 421
SinI GGWCC 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 23
SspMI CTAG 2 cut(s) 345, 395
StyD4I CCNGG 2 cut(s) 293, 421
TaqI TCGA 2 cut(s) 8, 213
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 100, 451
TseI GCWGC 3 cut(s) 284, 506, 509
TspDTI ATGAA 3 cut(s) 68, 86, 244
TspRI CASTG 2 cut(s) 100, 451
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 472
XspI CTAG 2 cut(s) 345, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.