Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011463

Physical Location & Seq

Genomic Coordinates Reverse (-)

18323103 .. 18326470

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G244600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAATCGGGAGAAACTTATGAAGATGGCCGGTGCAGTTCGCACTGGTGGAAAGGGTAGCATGAGGAGAAAGAAGAAGGCTGTTCACAAGACAACTACCACTGACGATAAAAGGCTTCAGAGCACCCTTAAGAGAATAGGGGTGAATGCTATTCCTGCAATCGAGGAAGTTAACATATTTAAGGATGATGTTGTCATCCAGTTCATAAACCCCAAAGTTCAAGCTTCCATTGCTGCCAATACTTGGGTTGTTAGCGGTTCTCCTCAGACAAAGAAGTTGCAAGATATTCTTCCCAGTATTATCAGCCACTTGGGGCCAGATAACTTGGACAATTTGAAGAAACTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGTGGTGGTGGTGGTGGTGGAACCACTGCACAAGAGGATGATGACGACGACGTCCCTGAGCTTGTTGCTGGTGAGACCTTTGAAGCCGCTGCAGAGGAGAAGGACAAGGAGGAGGAGAAGCAAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

NAC

Protein Analysis

168

Amino Acids

18.05

Weight (kDa)

6.17

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17880 AT1G73230
fragaria_vesca	FvH4_5g18511 FvH4_5g18511
malus_domestica	MD06G1239900.v1.1 MD14G1246300.v1.1
prunus_persica	Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1 Prupe.5G244600_v2.0.a1
pyrus_communis	pycom06g21550 pycom14g20710
rosa_chinensis	RchiOBHm_Chr7g0177001
rosa_laevigata	RLG00000005565
rosa_multiflora	Rmu_sc0005310.1_g000032
rosa_roxburghii	Rroxscaffold_3G00276180
rosa_samantha	Rh7AG002300 Rh7BG002600 Rh7CG001900 Rh7DG002500
rosa_wichuraiana	Rw7G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AatII	GACGTC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	243
AciI	CCGC	2 cut(s)	255, 459
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	423
AdeI	CACNNNGTG	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	243, 377
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	221, 337, 455
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	224, 433, 497
AluI	AGCT	3 cut(s)	224, 433, 497
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	440
AoxI	GGCC	2 cut(s)	27, 314
ApeKI	GCWGC	2 cut(s)	233, 461
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	154, 455
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	220, 448
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	3 cut(s)	234, 459, 462
BlsI	GCNGC	3 cut(s)	235, 460, 463
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	315, 394
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 377
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	4 cut(s)	49, 199, 294, 348
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	190, 195, 415
BseLI	CCNNNNNNNGG	2 cut(s)	243, 377
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	278, 420
BseNI	ACTGG	4 cut(s)	49, 199, 294, 348
BseRI	GAGGAG	5 cut(s)	79, 252, 482, 497, 500
BseXI	GCAGC	2 cut(s)	220, 448
BsgI	GTGCAG	2 cut(s)	54, 384
BshFI	GGCC	2 cut(s)	29, 316
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	243, 377
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	29, 316
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	125
BspACI	CCGC	2 cut(s)	255, 459
BspANI	GGCC	2 cut(s)	29, 316
BspCNI	CTCAG	2 cut(s)	277, 421
BspLI	GGNNCC	2 cut(s)	315, 394
BspMAI	CTGCAG	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	4 cut(s)	49, 199, 294, 348
BssAI	RCCGGY	1 cut(s)	29
BssNI	GRCGYC	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	366, 495
BstDEI	CTNAG	3 cut(s)	264, 429, 501
BstF5I	GGATG	3 cut(s)	190, 195, 415
BstMAI	GTCTC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 230
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	220, 448
BsuRI	GGCC	2 cut(s)	29, 316
BtsCI	GGATG	3 cut(s)	190, 195, 415
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	42, 99, 396
Cac8I	GCNNGC	2 cut(s)	366, 495
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	314
CsiI	ACCWGGT	1 cut(s)	370
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	9 cut(s)	29, 80, 115, 224, 306, 316, 433, 458, 497
CviKI_1	RGCY	9 cut(s)	29, 80, 115, 224, 306, 316, 433, 458, 497
DdeI	CTNAG	3 cut(s)	264, 429, 501
DraIII	CACNNNGTG	1 cut(s)	374
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	20, 62, 176, 206
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	234, 459, 462
FokI	GGATG	3 cut(s)	182, 197, 422
Fsp4HI	GCNGC	3 cut(s)	234, 459, 462
GluI	GCNGC	3 cut(s)	234, 459, 462
HaeIII	GGCC	2 cut(s)	29, 316
HapII	CCGG	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	222, 495
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	154, 455
Hpy166II	GTNNAC	2 cut(s)	85, 172
Hpy188I	TCNGA	2 cut(s)	120, 267
Hpy188III	TCNNGA	2 cut(s)	8, 358
Hpy8I	GTNNAC	2 cut(s)	85, 172
Hpy99I	CGWCG	2 cut(s)	422, 425
HpyAV	CCTTC	2 cut(s)	70, 466
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	35, 158, 280, 401, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 230
HpyF3I	CTNAG	3 cut(s)	264, 429, 501
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	220, 448
MabI	ACCWGGT	1 cut(s)	370
MaeII	ACGT	1 cut(s)	423
MboII	GAAGA	4 cut(s)	34, 85, 281, 349
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	1 cut(s)	331
MnlI	CCTC	7 cut(s)	57, 157, 273, 400, 460, 475, 478
MseI	TTAA	3 cut(s)	129, 171, 180
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	155, 230
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	315, 394
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	235, 460, 463
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	315, 394
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	129, 171, 180
SatI	GCNGC	3 cut(s)	234, 459, 462
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	226, 373, 426, 435, 452, 499
SexAI	ACCWGGT	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	2 cut(s)	255, 459
StyD4I	CCNGG	1 cut(s)	370
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	331
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	129, 171, 180
Tru9I	TTAA	3 cut(s)	129, 171, 180
TscAI	CASTG	3 cut(s)	49, 106, 403
TseI	GCWGC	2 cut(s)	233, 461
TspDTI	ATGAA	3 cut(s)	17, 35, 193
TspRI	CASTG	3 cut(s)	49, 106, 403
Tth111I	GACNNNGTC	1 cut(s)	422
Van91I	CCANNNNNTGG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.