Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005619

Physical Location & Seq

Genomic Coordinates Forward (+)

6255736 .. 6257900

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTGAAAGTAATCGATTCCCATTACCTAGCCATCACCGCCATTGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACTGACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCTGCTTCTCAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACTTCGTCTGGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGATGACATGCGTGAAAATATTGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGTTTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCAGCCCGCAGATGTTATCGGTTGGACAATGTGGGTTGCAGGGTTCTTGATTGAAGCTACAGCTGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGATGTTGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGGCTTATATGTGGCTTCATTGCCTGTGCTTAAAGGTCTCGAGTACCTTGTCATAATTGGACCAGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGCGGACAAAAAGTATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCTGATTCTCTTACCGCGAGGAGTGTATGGGTACTTACCAATATGGTGCAAATCAGTCTTTCTCTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCTTGGGATAGACGAAACTCGAAGAAGAGCCAGAGAAGCATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

305

Amino Acids

35.2

Weight (kDa)

9.45

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	24 - 252	1.4e-92	Protein of unknown function (DUF1295)
Steroid_dh	PF02544	132 - 200	8.4e-07	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18180 AT1G18180 AT1G73650 AT1G73650 AT1G73650 AT1G73650 AT1G73650
fragaria_vesca	FvH4_5g17190
malus_domestica	MD06G1230700.v1.1 MD14G1235300.v1.1
prunus_persica	Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1
pyrus_communis	pycom04g01460 pycom06g20190 pycom14g19630
rosa_chinensis	RchiOBHm_Chr7g0178611
rosa_laevigata	RLG00000005432
rosa_rugosa	Rorug06G0418400 Rorug06G0418400 Rorug06G0418400 Rorug06G0418500 Rorug06G0418500
rosa_samantha	Rh7AG017100 Rh7BG016600 Rh7CG017300 Rh7DG017200
rosa_wichuraiana	Rw7G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	778
AciI	CCGC	5 cut(s)	39, 408, 678, 704, 776
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	95, 130
AfaI	GTAC	4 cut(s)	127, 626, 794, 842
AgsI	TTSAA	3 cut(s)	94, 455, 487
AhdI	GACNNNNNGTC	1 cut(s)	756
AhlI	ACTAGT	2 cut(s)	310, 755
AluBI	AGCT	6 cut(s)	86, 458, 464, 478, 731, 872
AluI	AGCT	6 cut(s)	86, 458, 464, 478, 731, 872
Alw26I	GTCTC	2 cut(s)	623, 857
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	2 cut(s)	620, 692
AoxI	GGCC	1 cut(s)	333
ApoI	RAATTY	2 cut(s)	95, 130
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	5 cut(s)	16, 28, 40, 278, 575
AvaI	CYCGRG	2 cut(s)	620, 692
AvaII	GGWCC	1 cut(s)	641
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	1 cut(s)	755
BccI	CCATC	2 cut(s)	41, 555
BceAI	ACGGC	2 cut(s)	320, 831
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BclI	TGATCA	2 cut(s)	100, 466
BcoDI	GTCTC	2 cut(s)	623, 857
BcuI	ACTAGT	2 cut(s)	310, 755
BfaI	CTAG	4 cut(s)	29, 206, 311, 756
BfmI	CTRYAG	2 cut(s)	459, 867
BisI	GCNGC	1 cut(s)	679
BlsI	GCNGC	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	641
BmeRI	GACNNNNNGTC	1 cut(s)	756
BmeT110I	CYCGRG	2 cut(s)	620, 692
BmgT120I	GGNCC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	843
Bsa29I	ATCGAT	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bse1I	ACTGG	1 cut(s)	644
Bse3DI	GCAATG	2 cut(s)	266, 599
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	547
BseMI	GCAATG	2 cut(s)	266, 599
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	15
BsiHKCI	CYCGRG	2 cut(s)	620, 692
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	3 cut(s)	184, 234, 246
BsmAI	GTCTC	2 cut(s)	623, 857
BsmFI	GGGAC	3 cut(s)	184, 234, 246
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	623
BsoBI	CYCGRG	2 cut(s)	620, 692
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	4 cut(s)	100, 252, 271, 466
BspACI	CCGC	5 cut(s)	39, 408, 678, 704, 776
BspANI	GGCC	1 cut(s)	335
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	623
BsrDI	GCAATG	2 cut(s)	266, 599
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	100, 252, 271, 466
Bst4CI	ACNGT	5 cut(s)	52, 202, 237, 352, 389
Bst6I	CTCTTC	2 cut(s)	674, 890
BstAUI	TGTACA	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	382, 408
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	778
BstKTI	GATC	4 cut(s)	103, 255, 274, 469
BstMAI	GTCTC	2 cut(s)	623, 857
BstMBI	GATC	4 cut(s)	100, 252, 271, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 906
BstNSI	RCATGY	1 cut(s)	292
BstSFI	CTRYAG	2 cut(s)	459, 867
BstUI	CGCG	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	755
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	382, 408
Cfr13I	GGNCC	1 cut(s)	641
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	4 cut(s)	126, 625, 793, 841
CviAII	CATG	2 cut(s)	174, 289
CviQI	GTAC	4 cut(s)	126, 625, 793, 841
DpnI	GATC	4 cut(s)	102, 254, 273, 468
DpnII	GATC	4 cut(s)	100, 252, 271, 466
DriI	GACNNNNNGTC	1 cut(s)	756
Eam1104I	CTCTTC	2 cut(s)	674, 890
Eam1105I	GACNNNNNGTC	1 cut(s)	756
EarI	CTCTTC	2 cut(s)	674, 890
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	641
Eco88I	CYCGRG	2 cut(s)	620, 692
FaeI	CATG	2 cut(s)	177, 292
FaqI	GGGAC	3 cut(s)	184, 234, 246
FatI	CATG	2 cut(s)	173, 288
FauI	CCCGC	1 cut(s)	415
FbaI	TGATCA	2 cut(s)	100, 466
Fnu4HI	GCNGC	1 cut(s)	679
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	679
FspBI	CTAG	4 cut(s)	29, 206, 311, 756
GluI	GCNGC	1 cut(s)	679
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	177, 292
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	4 cut(s)	17, 154, 698, 766
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	5 cut(s)	16, 28, 40, 278, 575
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	189, 765
Hpy188III	TCNNGA	7 cut(s)	136, 196, 448, 487, 497, 620, 860
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	279
HpyCH4III	ACNGT	5 cut(s)	52, 202, 237, 352, 389
HpyCH4V	TGCA	4 cut(s)	259, 380, 440, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 906
Hsp92II	CATG	2 cut(s)	177, 292
Ksp22I	TGATCA	2 cut(s)	100, 466
Kzo9I	GATC	4 cut(s)	100, 252, 271, 466
LguI	GCTCTTC	1 cut(s)	890
LmnI	GCTCC	1 cut(s)	728
MaeI	CTAG	4 cut(s)	29, 206, 311, 756
MaeIII	GTNAC	5 cut(s)	46, 106, 364, 570, 719
MalI	GATC	4 cut(s)	102, 254, 273, 468
MboI	GATC	4 cut(s)	100, 252, 271, 466
MboII	GAAGA	8 cut(s)	64, 281, 405, 661, 760, 845, 904, 907
MflI	RGATCY	1 cut(s)	252
MluCI	AATT	4 cut(s)	62, 95, 130, 636
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	6 cut(s)	243, 251, 688, 771, 773, 867
MseI	TTAA	2 cut(s)	375, 612
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	2 cut(s)	38, 906
NdeII	GATC	4 cut(s)	100, 252, 271, 466
NlaIII	CATG	2 cut(s)	177, 292
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	292
PaeR7I	CTCGAG	2 cut(s)	620, 692
PciSI	GCTCTTC	1 cut(s)	890
PfeI	GAWTC	3 cut(s)	17, 698, 766
PflFI	GACNNNGTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	680
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	641
PspXI	VCTCGAGB	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	4 cut(s)	127, 626, 794, 842
RsaNI	GTAC	4 cut(s)	126, 625, 793, 841
SapI	GCTCTTC	1 cut(s)	890
SaqAI	TTAA	2 cut(s)	375, 612
SatI	GCNGC	1 cut(s)	679
Sau3AI	GATC	4 cut(s)	100, 252, 271, 466
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	459, 867
Sfr274I	CTCGAG	2 cut(s)	620, 692
SinI	GGWCC	1 cut(s)	641
SlaI	CTCGAG	2 cut(s)	620, 692
SmlI	CTYRAG	3 cut(s)	620, 692, 858
SmoI	CTYRAG	3 cut(s)	620, 692, 858
SpeI	ACTAGT	2 cut(s)	310, 755
Sse9I	AATT	4 cut(s)	62, 95, 130, 636
SsiI	CCGC	5 cut(s)	39, 408, 678, 704, 776
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	4 cut(s)	29, 206, 311, 756
TaaI	ACNGT	5 cut(s)	52, 202, 237, 352, 389
TaqI	TCGA	6 cut(s)	15, 274, 621, 693, 736, 890
TasI	AATT	4 cut(s)	62, 95, 130, 636
TatI	WGTACW	2 cut(s)	125, 840
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	17, 698, 766
Tru1I	TTAA	2 cut(s)	375, 612
Tru9I	TTAA	2 cut(s)	375, 612
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	55, 588
Tth111I	GACNNNGTC	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	2 cut(s)	95, 130
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XhoI	CTCGAG	2 cut(s)	620, 692
XspI	CTAG	4 cut(s)	29, 206, 311, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.