Prupe.5G232000_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0005619
Physical Location & Seq
Forward (+)
17674277 .. 17677265
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G232000.1

Sequence Viewer

Length: 957 bp
ATGGTTTTTTCTTTTTCCTTCTGGATTTCATTTCCTCTCTCGAAAGTTTTTAAATTTAGTGTTTTTTTGGTTTTTTTCTTCAAGGTGGGGTATCAGTTGTTGTTCTTCATAATCACTGCTCTTCTCAAGTTCGACAAAATCACTGACTTCGCCGGAAGTACAAATTTTGTTATACTTGCTATACTGACTTTGGTTGTCAAAGGCTCATGGCATTTTAGACAGGTAGTGTTGAGTTTGCTTGTGGTAATATGGGGTCTTCGCCTGGGACTGTTTCTATTGATGAGGATTTTGCAATGGGGAGAGGACCGACGTTTTGATGAAATGCGTAATAATATAGGAAAATTGGCAATTTTCTGGATATTTCAGGCTGTCTGGGTATGGACTGTGAGTTTGCCTGTAACAGTTGTTAATGCAAGCAACAGAACACCATCGCTCCAAGCTCAGGACATAATTGGATGGATCATATGGTTTGTGGGTTTTGCAGTTGAAGCTACAGCTGATCAGCAAAAACTGACGTTCAAAAGTTCTCCACAAAATAGAGGAAAGTGGTGCAATGCCGGACTGTGGAAATACACTCGACATCCGAACTATTTTGGCGAGATATTCCTTTGGTGGGGAGTGTTTGTGGCTTCCACACCTGTATTAAAAGGTGCAGAGTGGCTGGTGATTCTTGGACCAATCTTTCTCACATTGTTGCTTCTTTTCATCAGCGGCATACCGTTGCTTGAGGAGTCTGCAGATAAGAAGTTTGGAAATGTGGGCGAATATAGGCTGTACAAAAGAACAACTAGCCCTCTCATTCCGCTACCCCCGGTTATATACAAGAACTTGCCCTTGTGGTTCAAAGCAACTTTTCTCTTCGAATTTCCTCTCTACGGTCGTAATCTTCCTCGAGAAGAGCCAAACTGGTGTAGAACAAGCCGGGTAGAAGGAAGCGATGGATTGAAGATTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

319

Amino Acids

36.81

Weight (kDa)

9.84

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 711, 803
AclWI GGATC 1 cut(s) 467
AcsI RAATTY 3 cut(s) 53, 163, 863
AfaI GTAC 2 cut(s) 160, 776
AfiI CCNNNNNNNGG 4 cut(s) 442, 564, 613, 875
AgsI TTSAA 5 cut(s) 82, 488, 520, 844, 946
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 3 cut(s) 440, 491, 497
AluI AGCT 3 cut(s) 440, 491, 497
AlwI GGATC 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 891
ApoI RAATTY 3 cut(s) 53, 163, 863
ArsI GACNNNNNNTTYG 4 cut(s) 296, 328, 373, 405
AspS9I GGNCC 2 cut(s) 304, 674
AsuC2I CCSGG 2 cut(s) 812, 923
AsuHPI GGTGA 1 cut(s) 676
AsuII TTCGAA 1 cut(s) 861
AvaI CYCGRG 1 cut(s) 891
AvaII GGWCC 2 cut(s) 304, 674
BbsI GAAGAC 1 cut(s) 248
BccI CCATC 3 cut(s) 436, 450, 932
BciT130I CCWGG 1 cut(s) 263
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 2 cut(s) 812, 923
BfaI CTAG 2 cut(s) 789, 955
BfmI CTRYAG 2 cut(s) 492, 735
BisI GCNGC 1 cut(s) 712
BlsI GCNGC 1 cut(s) 713
Bme1390I CCNGG 3 cut(s) 263, 812, 923
Bme18I GGWCC 2 cut(s) 304, 674
BmeT110I CYCGRG 1 cut(s) 891
BmgT120I GGNCC 2 cut(s) 304, 674
BmrFI CCNGG 3 cut(s) 263, 812, 923
BpiI GAAGAC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 861
BpuEI CTTGAG 2 cut(s) 110, 746
BpuMI CCSGG 2 cut(s) 812, 923
BsaJI CCNNGG 2 cut(s) 262, 810
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 609, 639
Bsc4I CCNNNNNNNGG 4 cut(s) 442, 564, 613, 875
Bse1I ACTGG 1 cut(s) 911
Bse3DI GCAATG 2 cut(s) 299, 559
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 262, 810
BseGI GGATG 2 cut(s) 461, 580
BseLI CCNNNNNNNGG 4 cut(s) 442, 564, 613, 875
BseMI GCAATG 2 cut(s) 299, 559
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 911
BseRI GAGGAG 1 cut(s) 743
BsgI GTGCAG 1 cut(s) 672
Bsh1285I CGRYCG 1 cut(s) 880
BsiEI CGRYCG 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 891
BsiSI CCGG 4 cut(s) 153, 558, 812, 922
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 4 cut(s) 442, 564, 613, 875
BsmFI GGGAC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 891
Bsp119I TTCGAA 1 cut(s) 861
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 2 cut(s) 459, 499
BspACI CCGC 2 cut(s) 711, 803
BspCNI CTCAG 1 cut(s) 454
BspMAI CTGCAG 1 cut(s) 739
BspPI GGATC 1 cut(s) 467
BspQI GCTCTTC 2 cut(s) 126, 891
BspT104I TTCGAA 1 cut(s) 861
BsrDI GCAATG 2 cut(s) 299, 559
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 1 cut(s) 911
BssECI CCNNGG 2 cut(s) 262, 810
BssMI GATC 2 cut(s) 459, 499
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 6 cut(s) 270, 385, 403, 564, 720, 878
Bst6I CTCTTC 3 cut(s) 126, 863, 891
BstAUI TGTACA 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 461, 580
BstKTI GATC 2 cut(s) 462, 502
BstMBI GATC 2 cut(s) 459, 499
BstMCI CGRYCG 1 cut(s) 880
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 3 cut(s) 261, 810, 921
BstSFI CTRYAG 2 cut(s) 492, 735
BstV2I GAAGAC 1 cut(s) 248
BtgZI GCGATG 2 cut(s) 414, 951
BtsCI GGATG 2 cut(s) 461, 580
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 141
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 304, 674
Csp6I GTAC 2 cut(s) 159, 775
CviAII CATG 1 cut(s) 207
CviQI GTAC 2 cut(s) 159, 775
DdeI CTNAG 1 cut(s) 441
DpnI GATC 2 cut(s) 461, 501
DpnII GATC 2 cut(s) 459, 499
DraI TTTAAA 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 126, 863, 891
EarI CTCTTC 3 cut(s) 126, 863, 891
Eco47I GGWCC 2 cut(s) 304, 674
Eco88I CYCGRG 1 cut(s) 891
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 210
FaqI GGGAC 1 cut(s) 279
FatI CATG 1 cut(s) 206
FauNDI CATATG 1 cut(s) 464
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 712
FokI GGATG 2 cut(s) 468, 567
Fsp4HI GCNGC 1 cut(s) 712
FspBI CTAG 2 cut(s) 789, 955
GluI GCNGC 1 cut(s) 712
HapII CCGG 4 cut(s) 153, 558, 812, 922
Hin1II CATG 1 cut(s) 210
HinfI GANTC 2 cut(s) 667, 731
HpaII CCGG 4 cut(s) 153, 558, 812, 922
HphI GGTGA 1 cut(s) 676
Hpy188I TCNGA 1 cut(s) 585
Hpy188III TCNNGA 5 cut(s) 22, 40, 355, 443, 893
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 28, 923
HpyCH4III ACNGT 6 cut(s) 270, 385, 403, 564, 720, 878
HpyCH4IV ACGT 2 cut(s) 310, 515
HpyCH4V TGCA 6 cut(s) 292, 413, 482, 552, 653, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 2 cut(s) 310, 515
Hsp92II CATG 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 459, 499
LguI GCTCTTC 2 cut(s) 126, 891
LmnI GCTCC 1 cut(s) 438
MaeI CTAG 2 cut(s) 789, 955
MaeII ACGT 2 cut(s) 310, 515
MaeIII GTNAC 1 cut(s) 397
MalI GATC 2 cut(s) 461, 501
MboI GATC 2 cut(s) 459, 499
MboII GAAGA 7 cut(s) 70, 97, 113, 248, 850, 878, 908
MluCI AATT 6 cut(s) 53, 163, 341, 348, 450, 863
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 8 cut(s) 45, 276, 295, 533, 721, 804, 879, 900
MseI TTAA 3 cut(s) 51, 408, 644
MspA1I CMGCKG 2 cut(s) 497, 711
MspI CCGG 4 cut(s) 153, 558, 812, 922
MspR9I CCNGG 3 cut(s) 263, 812, 923
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 2 cut(s) 812, 923
NdeI CATATG 1 cut(s) 464
NdeII GATC 2 cut(s) 459, 499
NlaIII CATG 1 cut(s) 210
NspV TTCGAA 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 891
PciSI GCTCTTC 2 cut(s) 126, 891
PfeI GAWTC 1 cut(s) 667
PkrI GCNGC 1 cut(s) 713
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspPI GGNCC 2 cut(s) 304, 674
PstI CTGCAG 1 cut(s) 739
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 160, 776
RsaNI GTAC 2 cut(s) 159, 775
SapI GCTCTTC 2 cut(s) 126, 891
SaqAI TTAA 3 cut(s) 51, 408, 644
SatI GCNGC 1 cut(s) 712
Sau3AI GATC 2 cut(s) 459, 499
Sau96I GGNCC 2 cut(s) 304, 674
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 3 cut(s) 263, 812, 923
SetI ASST 9 cut(s) 87, 225, 313, 442, 493, 499, 518, 640, 652
SfcI CTRYAG 2 cut(s) 492, 735
Sfr274I CTCGAG 1 cut(s) 891
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 2 cut(s) 304, 674
SlaI CTCGAG 1 cut(s) 891
SmlI CTYRAG 3 cut(s) 125, 725, 891
SmoI CTYRAG 3 cut(s) 125, 725, 891
Sse9I AATT 6 cut(s) 53, 163, 341, 348, 450, 863
SsiI CCGC 2 cut(s) 711, 803
SspMI CTAG 2 cut(s) 789, 955
StyD4I CCNGG 3 cut(s) 261, 810, 921
TaaI ACNGT 6 cut(s) 270, 385, 403, 564, 720, 878
TaiI ACGT 2 cut(s) 313, 518
TaqI TCGA 5 cut(s) 41, 132, 577, 861, 892
TaqII GACCGA 1 cut(s) 321
TasI AATT 6 cut(s) 53, 163, 341, 348, 450, 863
TatI WGTACW 2 cut(s) 158, 774
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 3 cut(s) 51, 408, 644
Tru9I TTAA 3 cut(s) 51, 408, 644
TscAI CASTG 2 cut(s) 121, 148
TspDTI ATGAA 4 cut(s) 18, 97, 333, 694
TspRI CASTG 2 cut(s) 121, 148
VpaK11BI GGWCC 2 cut(s) 304, 674
XapI RAATTY 3 cut(s) 53, 163, 863
XhoI CTCGAG 1 cut(s) 891
XspI CTAG 2 cut(s) 789, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.