Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005619

Physical Location & Seq

Genomic Coordinates Forward (+)

23327033 .. 23329655

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20190.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAAGTGTCTTGGATTCCAATTTCTTAGCTCTCACTGCCATTGTCACTGTGGGGTATCAGTTGTTGTTCTTCATAGTCACTGCTCTTCTCAAGTTCGACAAAGTCACTGACTTTGCTGGAAGTACCAATTTTGTTATACTTGCTATTCTGACCTTGGTTGTCAAAGGTTCATGGCATTTTAGACAGGTAGTGTTGAGTTTGCTTGTGATAATATGGGGTCTTCGCCTCGGATTTTTTCTACTGATGAGGATTTTGCAATGGGGAGAGGATCGGCGTTTTGATGAAATACGTGGTAATCTAGGGAAGTTAGCAGTTTTCTGGATATTTCAGGCTATGTGGGTATGGACTGTGAGTTTACCTGTAACAGTTGCTAATGCAAGCAACAGAACGCCATTGATCCAAGCTGCAGACATAATTGGTTGGATTATGTGGTCTGTTGGTTTTTCAGTTGAAGCTGCAGCTGATCAGCAAAAGTTAACTTTCAAAAGTTCTGCACAAAATAGAGGAAAGTGGTGCAATGTCGGACTATGGAAATACACTCGTCATCCAAACTATTTTGGTGAGATATTCCTTTGGTGGGGAGTATTTGTGGCTTCCACACCCGTATTGGAGGGTGCAGAGTGGCTGGTGATTCTTGGACCAATCTTTCTCACGTTGTTGCTTCTTTTCATCAGTGGCATCCCGTTGCTTGAGGAATCTACGGATAAGAAGTTTGGAAACATAGACGAATATAGGCTGTATAAAAGATCGACTAGCCCTCTGACACCGCTACCTCCAGTTATATACAAGAACTTGCCGTTGTGGTTCAAAACAACTTTTCTCTTTGAGTTTCCTCTCTACAGCCGTAATCTTCCTCGAGAAAAGCCTAACTGGAGAACAAGCCGGGTAGATCGAAGAAGCGATGGATTGAAGATCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

308

Amino Acids

35.22

Weight (kDa)

9.76

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18180 AT1G18180 AT1G73650 AT1G73650 AT1G73650 AT1G73650 AT1G73650
fragaria_vesca	FvH4_5g17190
malus_domestica	MD06G1230700.v1.1 MD14G1235300.v1.1
prunus_persica	Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1
pyrus_communis	pycom04g01460 pycom06g20190 pycom14g19630
rosa_chinensis	RchiOBHm_Chr7g0178611
rosa_laevigata	RLG00000005432
rosa_rugosa	Rorug06G0418400 Rorug06G0418400 Rorug06G0418400 Rorug06G0418500 Rorug06G0418500
rosa_samantha	Rh7AG017100 Rh7BG016600 Rh7CG017300 Rh7DG017200
rosa_wichuraiana	Rw7G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	770
AclWI	GGATC	2 cut(s)	279, 394
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	455, 487, 811, 913
AluBI	AGCT	4 cut(s)	32, 407, 458, 464
AluI	AGCT	4 cut(s)	32, 407, 458, 464
AlwI	GGATC	2 cut(s)	279, 394
Ama87I	CYCGRG	1 cut(s)	858
ApeKI	GCWGC	3 cut(s)	407, 458, 461
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	2 cut(s)	575, 643
AvaI	CYCGRG	1 cut(s)	858
AvaII	GGWCC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	394, 445, 473
BccI	CCATC	1 cut(s)	899
BceAI	ACGGC	2 cut(s)	784, 831
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	887
BfaI	CTAG	3 cut(s)	302, 756, 922
BfmI	CTRYAG	3 cut(s)	408, 459, 841
BisI	GCNGC	3 cut(s)	408, 459, 462
BlsI	GCNGC	3 cut(s)	409, 460, 463
Bme1390I	CCNGG	1 cut(s)	887
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	641
BmrFI	CCNGG	1 cut(s)	887
BmsI	GCATC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	2 cut(s)	762, 895
BpuEI	CTTGAG	2 cut(s)	77, 713
BpuMI	CCSGG	1 cut(s)	887
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	156, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	779, 878
Bse3DI	GCAATG	2 cut(s)	266, 526
BseDI	CCNNGG	2 cut(s)	156, 229
BseGI	GGATG	2 cut(s)	547, 681
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	266, 526
BseNI	ACTGG	2 cut(s)	779, 878
BseXI	GCAGC	3 cut(s)	394, 445, 473
BsgI	GTGCAG	2 cut(s)	480, 639
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	1 cut(s)	886
BslI	CCNNNNNNNGG	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	858
Bsp143I	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
BspACI	CCGC	1 cut(s)	770
BspMAI	CTGCAG	2 cut(s)	412, 463
BspPI	GGATC	2 cut(s)	279, 394
BspQI	GCTCTTC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	266, 526
BsrI	ACTGG	2 cut(s)	779, 878
BssECI	CCNNGG	2 cut(s)	156, 229
BssMI	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	52, 352, 370
Bst6I	CTCTTC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	547, 681
BstKTI	GATC	6 cut(s)	274, 402, 469, 752, 895, 918
BstMBI	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	885
BstSFI	CTRYAG	3 cut(s)	408, 459, 841
BstV1I	GCAGC	3 cut(s)	394, 445, 473
BstV2I	GAAGAC	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	918
BtsCI	GGATG	2 cut(s)	547, 681
BtsI	GCAGTG	2 cut(s)	36, 81
BtsIMutI	CAGTG	5 cut(s)	36, 48, 81, 108, 682
Cac8I	GCNNGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	174
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	6 cut(s)	273, 401, 468, 751, 894, 917
DpnII	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	177
FatI	CATG	1 cut(s)	173
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	408, 459, 462
FokI	GGATG	2 cut(s)	534, 668
Fsp4HI	GCNGC	3 cut(s)	408, 459, 462
FspBI	CTAG	3 cut(s)	302, 756, 922
GluI	GCNGC	3 cut(s)	408, 459, 462
GsuI	CTGGAG	2 cut(s)	762, 895
HapII	CCGG	1 cut(s)	886
Hin1II	CATG	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	3 cut(s)	17, 634, 698
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	886
HphI	GGTGA	2 cut(s)	575, 643
Hpy166II	GTNNAC	2 cut(s)	359, 480
Hpy188I	TCNGA	4 cut(s)	153, 233, 527, 765
Hpy188III	TCNNGA	2 cut(s)	322, 860
Hpy8I	GTNNAC	2 cut(s)	359, 480
HpyCH4III	ACNGT	3 cut(s)	52, 352, 370
HpyCH4IV	ACGT	2 cut(s)	292, 656
HpyCH4V	TGCA	7 cut(s)	259, 380, 410, 461, 497, 519, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	2 cut(s)	292, 656
Hsp92II	CATG	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
LguI	GCTCTTC	1 cut(s)	93
LpnPI	CCDG	9 cut(s)	105, 173, 307, 317, 375, 614, 792, 859, 899
Lsp1109I	GCAGC	3 cut(s)	394, 445, 473
LweI	GCATC	1 cut(s)	690
MaeI	CTAG	3 cut(s)	302, 756, 922
MaeII	ACGT	2 cut(s)	292, 656
MaeIII	GTNAC	4 cut(s)	46, 79, 106, 364
MalI	GATC	6 cut(s)	273, 401, 468, 751, 894, 917
MboI	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
MboII	GAAGA	5 cut(s)	64, 80, 215, 845, 909
MluCI	AATT	3 cut(s)	22, 130, 417
MmeI	TCCRAC	2 cut(s)	404, 505
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	886
MspR9I	CCNGG	1 cut(s)	887
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	887
NdeII	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
NlaIII	CATG	1 cut(s)	177
NmuCI	GTSAC	3 cut(s)	46, 79, 106
PaeR7I	CTCGAG	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	17, 634, 698
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	409, 460, 463
Ppu21I	YACGTR	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	641
PstI	CTGCAG	2 cut(s)	412, 463
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	3 cut(s)	408, 459, 462
Sau3AI	GATC	6 cut(s)	271, 399, 466, 749, 892, 915
Sau96I	GGNCC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	887
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	3 cut(s)	408, 459, 841
Sfr274I	CTCGAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	858
SmlI	CTYRAG	3 cut(s)	92, 692, 858
SmoI	CTYRAG	3 cut(s)	92, 692, 858
Sse9I	AATT	3 cut(s)	22, 130, 417
SsiI	CCGC	1 cut(s)	770
SspMI	CTAG	3 cut(s)	302, 756, 922
StyD4I	CCNGG	1 cut(s)	885
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	52, 352, 370
TaiI	ACGT	2 cut(s)	295, 659
TaqI	TCGA	4 cut(s)	99, 752, 859, 895
TasI	AATT	3 cut(s)	22, 130, 417
TfiI	GAWTC	3 cut(s)	17, 634, 698
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	5 cut(s)	43, 55, 88, 115, 682
TseFI	GTSAC	3 cut(s)	46, 79, 106
TseI	GCWGC	3 cut(s)	407, 458, 461
Tsp45I	GTSAC	3 cut(s)	46, 79, 106
TspDTI	ATGAA	4 cut(s)	64, 162, 300, 661
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	5 cut(s)	43, 55, 88, 115, 682
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 607
XhoI	CTCGAG	1 cut(s)	858
XspI	CTAG	3 cut(s)	302, 756, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.