Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005619

Physical Location & Seq

Genomic Coordinates Forward (+)

20888113 .. 20890560

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19630.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTGTTAAAACTTCAGCCACAAACAATTTCCTGTTGTATTGAATTTTCAAAGAGCTTCCTTTCCACTTTTGATATCTTCAGCAGCGGCAAGCAAAGCATAGAGCTTTTTGTTCAGAAGCAAAAACCCAGAACAATTTCCATGGGAAAAGTCTTGGATTCCAATTTCTTAGCTCTCACTGCCATTGTCACTGTGGGGTATCAGTTGTTGTTCTTTATAATCACTGCTCTTCTCAAGTTCGACAAAGTCACTGACTTTGCTGGAAGTACCAATTTTGTTATACTTGCTATTCTGACTTTGGTTGTGAAGTGGTCATGGCATTTTAGACAGGTAGTGTTGAGTTTGCTTGTGATAATATGGGGTCTTCGCCTCGGGTTGTTCCTACTGATGAGGTATTTTGCTGTGTGGGTATGGACTGTGAGTTTACCTGTAACAGTTGCTAATGCAAGCAACAGAACACCATCGCTCCAAGCTGCGGACATAATTGGATGGGTTATATGGTTTGTTGGTTTTTCAGTTGAAGCTGCAGCGGATCAGCAAAAACTGACATTCAAAGGTTCTCCACAAAATAGAGGAAAGTGGTGCAATGTCGGACTATGGAAATACACTCGCCATCCAAACTATTTTGGTGAGATATTCCTTTGGTGGGGAGTGTTTATTGCTTCCACGCCTGTATTGAAAGGTGCAGAGTGGCTGGTGATTTTTGGACCGATCTTTCTCACGTTGTTGCTTCTTTTCATCAGTGGCATACCAATGCTTGAGGACTCTGCAGATAAGAAGTTTGGAAATGTGGACGAATACAGGCTGTATAAAAGATCGACTAGCCCTCTGATTCCGCTATCTCCGGTTATATACAAGAACTTGCCGTTGTGGTTCAAATCGACTTTTCTCTTTGAGTTTCCTCTCTACAGTCGTAATCTTCCTCGGTGTAGAACAAGCCCGGTAGAACGAAGAAGCGACGGATTGAAGATTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

326

Amino Acids

37.11

Weight (kDa)

9.78

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18180 AT1G18180 AT1G73650 AT1G73650 AT1G73650 AT1G73650 AT1G73650
fragaria_vesca	FvH4_5g17190
malus_domestica	MD06G1230700.v1.1 MD14G1235300.v1.1
prunus_persica	Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1
pyrus_communis	pycom04g01460 pycom06g20190 pycom14g19630
rosa_chinensis	RchiOBHm_Chr7g0178611
rosa_laevigata	RLG00000005432
rosa_rugosa	Rorug06G0418400 Rorug06G0418400 Rorug06G0418400 Rorug06G0418500 Rorug06G0418500
rosa_samantha	Rh7AG017100 Rh7BG016600 Rh7CG017300 Rh7DG017200
rosa_wichuraiana	Rw7G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AciI	CCGC	4 cut(s)	87, 476, 530, 836
AclWI	GGATC	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	475, 646
AgsI	TTSAA	7 cut(s)	44, 51, 521, 553, 679, 877, 967
AluBI	AGCT	5 cut(s)	57, 106, 173, 473, 524
AluI	AGCT	5 cut(s)	57, 106, 173, 473, 524
AlwI	GGATC	1 cut(s)	540
Ama87I	CYCGRG	1 cut(s)	371
ApeKI	GCWGC	4 cut(s)	84, 473, 524, 527
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	707
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	2 cut(s)	641, 709
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	4 cut(s)	96, 460, 511, 539
BccI	CCATC	3 cut(s)	469, 483, 621
BceAI	ACGGC	1 cut(s)	850
BcnI	CCSGG	1 cut(s)	941
BfaI	CTAG	2 cut(s)	822, 976
BfmI	CTRYAG	3 cut(s)	525, 768, 907
BisI	GCNGC	5 cut(s)	85, 88, 474, 525, 528
BlsI	GCNGC	5 cut(s)	86, 89, 475, 526, 529
Bme1390I	CCNGG	1 cut(s)	941
Bme18I	GGWCC	1 cut(s)	707
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	707
BmrFI	CCNGG	1 cut(s)	941
BpiI	GAAGAC	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	218, 779
BpuMI	CCSGG	1 cut(s)	941
BsaJI	CCNNGG	3 cut(s)	141, 370, 923
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 646
Bse3DI	GCAATG	1 cut(s)	592
BseDI	CCNNGG	3 cut(s)	141, 370, 923
BseGI	GGATG	2 cut(s)	494, 613
BseLI	CCNNNNNNNGG	2 cut(s)	475, 646
BseMI	GCAATG	1 cut(s)	592
BseXI	GCAGC	4 cut(s)	96, 460, 511, 539
BsgI	GTGCAG	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	845, 941
BslI	CCNNNNNNNGG	2 cut(s)	475, 646
BsoBI	CYCGRG	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	532, 711, 815
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	4 cut(s)	87, 476, 530, 836
BspMAI	CTGCAG	2 cut(s)	529, 772
BspPI	GGATC	1 cut(s)	540
BspQI	GCTCTTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	592
BssECI	CCNNGG	3 cut(s)	141, 370, 923
BssMI	GATC	3 cut(s)	532, 711, 815
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	193, 418, 436, 911
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	92, 448
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	494, 613
BstKTI	GATC	3 cut(s)	535, 714, 818
BstMBI	GATC	3 cut(s)	532, 711, 815
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 179
BstSCI	CCNGG	1 cut(s)	939
BstSFI	CTRYAG	3 cut(s)	525, 768, 907
BstV1I	GCAGC	4 cut(s)	96, 460, 511, 539
BstV2I	GAAGAC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	494, 613
BtsI	GCAGTG	2 cut(s)	177, 222
BtsIMutI	CAGTG	5 cut(s)	177, 189, 222, 249, 748
Cac8I	GCNNGC	2 cut(s)	92, 448
Cfr13I	GGNCC	1 cut(s)	707
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	2 cut(s)	142, 315
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	3 cut(s)	534, 713, 817
DpnII	GATC	3 cut(s)	532, 711, 815
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	145, 318
FatI	CATG	2 cut(s)	141, 314
Fnu4HI	GCNGC	5 cut(s)	85, 88, 474, 525, 528
FokI	GGATG	2 cut(s)	501, 600
Fsp4HI	GCNGC	5 cut(s)	85, 88, 474, 525, 528
FspBI	CTAG	2 cut(s)	822, 976
GluI	GCNGC	5 cut(s)	85, 88, 474, 525, 528
HapII	CCGG	2 cut(s)	845, 941
Hin1II	CATG	2 cut(s)	145, 318
HinfI	GANTC	3 cut(s)	158, 764, 832
HpaII	CCGG	2 cut(s)	845, 941
HphI	GGTGA	2 cut(s)	641, 709
Hpy166II	GTNNAC	2 cut(s)	425, 793
Hpy188I	TCNGA	4 cut(s)	117, 294, 593, 831
Hpy8I	GTNNAC	2 cut(s)	425, 793
Hpy99I	CGWCG	1 cut(s)	962
HpyCH4III	ACNGT	4 cut(s)	193, 418, 436, 911
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	5 cut(s)	446, 527, 585, 686, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 179
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	2 cut(s)	145, 318
Kzo9I	GATC	3 cut(s)	532, 711, 815
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	4 cut(s)	96, 460, 511, 539
MaeI	CTAG	2 cut(s)	822, 976
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	3 cut(s)	187, 247, 430
MalI	GATC	3 cut(s)	534, 713, 817
MboI	GATC	3 cut(s)	532, 711, 815
MboII	GAAGA	5 cut(s)	70, 221, 356, 911, 963
MluCI	AATT	6 cut(s)	27, 44, 135, 163, 271, 483
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	7 cut(s)	380, 384, 566, 754, 837, 912, 933
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	752
MspA1I	CMGCKG	2 cut(s)	87, 530
MspI	CCGG	2 cut(s)	845, 941
MspR9I	CCNGG	1 cut(s)	941
MwoI	GCNNNNNNNGC	2 cut(s)	96, 179
NciI	CCSGG	1 cut(s)	941
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	532, 711, 815
NlaIII	CATG	2 cut(s)	145, 318
NmuCI	GTSAC	2 cut(s)	187, 247
PciSI	GCTCTTC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	158, 832
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	86, 89, 475, 526, 529
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PsiI	TTATAA	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	707
PstI	CTGCAG	2 cut(s)	529, 772
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	5 cut(s)	85, 88, 474, 525, 528
Sau3AI	GATC	3 cut(s)	532, 711, 815
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	1 cut(s)	941
SfcI	CTRYAG	3 cut(s)	525, 768, 907
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	233, 758
SmoI	CTYRAG	2 cut(s)	233, 758
Sse9I	AATT	6 cut(s)	27, 44, 135, 163, 271, 483
SsiI	CCGC	4 cut(s)	87, 476, 530, 836
SspMI	CTAG	2 cut(s)	822, 976
StyD4I	CCNGG	1 cut(s)	939
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	4 cut(s)	193, 418, 436, 911
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	3 cut(s)	240, 818, 881
TaqII	GACCGA	1 cut(s)	724
TasI	AATT	6 cut(s)	27, 44, 135, 163, 271, 483
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	158, 832
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	5 cut(s)	184, 196, 229, 256, 748
TseFI	GTSAC	2 cut(s)	187, 247
TseI	GCWGC	4 cut(s)	84, 473, 524, 527
Tsp45I	GTSAC	2 cut(s)	187, 247
TspDTI	ATGAA	1 cut(s)	727
TspGWI	ACGGA	1 cut(s)	975
TspRI	CASTG	5 cut(s)	184, 196, 229, 256, 748
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	2 cut(s)	822, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.