Rh7AG017100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005619
Physical Location & Seq
Forward (+)
1134033 .. 1136842
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG017100.1

Sequence Viewer

Length: 663 bp
ATGAGAATTTTGCAATGGGGGGAGGATCGACGTTTTGATGAAATGCGAGCTAATCTTGGAAAACTGGCAGTATTCTGGATATTTCAGGCTGTCTGGGTATGGACTGTGAGTTTACCTGTAACAGTGGTTAATTCAAGCAACAAAACACCATCTCTTCAGGCTGCGGATGTTATTGGATGGATTATGTGGTCTATTGGTTTTTTGGTTGAAGCTACAGCTGATCAGCAAAAGCTGGTGTTCAAAAATTCTCCTCAAAATAGGGGAAAGTGGTGCAATGTTGGAATATGGAAATACACTAGGCATCCAAATTATTTTGGTGAGATATTCCTTTGGTGGGGAGTATTTGTGGCTTCCACACCTGTATTGGATGGTGCAGAGTGGCTGGTAATTCTTGGACCGATCTTTCTCACGTTGTTACTTCTTTTCCTCAGTGGCATACCATTGCTAGAGGAATCTGCAGATAAGAAGTATGGAAATGTGGACGGATATAGGCTCTATAAAAGATCAACCAGGTTAATATTAGCTTCTCTTTGGTACATGTTTCTCTTGAGCATGAATTGTAGCAACCGTGACCAACATTTTCTGTTTCAGCCCTCTAATTCCGCTACCCCCGGTCCTGTACAAGAACTTGCCCTCGTGGTTCAAAGCAACTTTTCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

220

Amino Acids

25.24

Weight (kDa)

8.91

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 1 - 170 2.2e-70 Protein of unknown function (DUF1295)
Steroid_dh PF02544 53 - 119 2.6e-06 3-oxo-5-alpha-steroid 4-dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 164, 603
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 2 cut(s) 6, 244
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 536, 621
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 135, 209, 241, 644
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 5 cut(s) 50, 212, 218, 232, 524
AluI AGCT 5 cut(s) 50, 212, 218, 232, 524
AlwI GGATC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 6, 244
AspS9I GGNCC 2 cut(s) 395, 614
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 2 cut(s) 395, 614
BauI CACGAG 1 cut(s) 635
BbvI GCAGC 1 cut(s) 148
BccI CCATC 3 cut(s) 157, 171, 362
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 612
BfaI CTAG 2 cut(s) 297, 446
BfmI CTRYAG 2 cut(s) 213, 456
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 511, 612
Bme18I GGWCC 2 cut(s) 395, 614
BmgT120I GGNCC 2 cut(s) 395, 614
BmrFI CCNGG 2 cut(s) 511, 612
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 568
BpuMI CCSGG 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 610
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 3 cut(s) 20, 280, 440
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 1 cut(s) 610
BseGI GGATG 4 cut(s) 172, 182, 301, 373
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 3 cut(s) 20, 280, 440
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 393
BsiSI CCGG 1 cut(s) 612
BslI CCNNNNNNNGG 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 4 cut(s) 25, 220, 399, 503
BspACI CCGC 2 cut(s) 164, 603
BspCNI CTCAG 1 cut(s) 441
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 3 cut(s) 20, 280, 440
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 4 cut(s) 25, 220, 399, 503
BssSI CACGAG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 3 cut(s) 106, 124, 569
Bst6I CTCTTC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 619
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 4 cut(s) 172, 182, 301, 373
BstKTI GATC 4 cut(s) 28, 223, 402, 506
BstMBI GATC 4 cut(s) 25, 220, 399, 503
BstNI CCWGG 1 cut(s) 511
BstNSI RCATGY 1 cut(s) 541
BstSCI CCNGG 2 cut(s) 509, 610
BstSFI CTRYAG 2 cut(s) 213, 456
BstV1I GCAGC 1 cut(s) 148
BtsCI GGATG 4 cut(s) 172, 182, 301, 373
BtsIMutI CAGTG 2 cut(s) 129, 436
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 395, 614
CsiI ACCWGGT 1 cut(s) 509
Csp6I GTAC 2 cut(s) 535, 620
CviAII CATG 2 cut(s) 538, 553
CviQI GTAC 2 cut(s) 535, 620
DdeI CTNAG 1 cut(s) 428
DpnI GATC 4 cut(s) 27, 222, 401, 505
DpnII GATC 4 cut(s) 25, 220, 399, 503
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 395, 614
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 509
FaeI CATG 2 cut(s) 541, 556
FaiI YATR 9 cut(s) 100, 185, 286, 437, 471, 489, 498, 539, 554
FatI CATG 2 cut(s) 537, 552
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 4 cut(s) 179, 189, 288, 380
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 297, 446
GluI GCNGC 1 cut(s) 162
HapII CCGG 1 cut(s) 612
Hin1II CATG 2 cut(s) 541, 556
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 612
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 113, 481
Hpy188III TCNNGA 2 cut(s) 76, 547
Hpy8I GTNNAC 2 cut(s) 113, 481
Hpy99I CGWCG 1 cut(s) 33
HpyCH4III ACNGT 3 cut(s) 106, 124, 569
HpyCH4IV ACGT 2 cut(s) 31, 410
HpyCH4V TGCA 4 cut(s) 13, 273, 374, 458
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 2 cut(s) 31, 410
Hsp92II CATG 2 cut(s) 541, 556
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 25, 220, 399, 503
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 310
MabI ACCWGGT 1 cut(s) 509
MaeI CTAG 2 cut(s) 297, 446
MaeII ACGT 2 cut(s) 31, 410
MaeIII GTNAC 3 cut(s) 118, 414, 569
MalI GATC 4 cut(s) 27, 222, 401, 505
MboI GATC 4 cut(s) 25, 220, 399, 503
MboII GAAGA 1 cut(s) 146
MluCI AATT 7 cut(s) 6, 130, 244, 307, 387, 556, 598
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 6 cut(s) 16, 261, 437, 442, 604, 644
MseI TTAA 2 cut(s) 129, 515
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 612
MspR9I CCNGG 2 cut(s) 511, 612
MvaI CCWGG 1 cut(s) 511
NciI CCSGG 1 cut(s) 612
NdeII GATC 4 cut(s) 25, 220, 399, 503
NlaIII CATG 2 cut(s) 541, 556
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 1 cut(s) 541
PciI ACATGT 1 cut(s) 537
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 163
PscI ACATGT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspPI GGNCC 2 cut(s) 395, 614
PstI CTGCAG 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 536, 621
RsaNI GTAC 2 cut(s) 535, 620
SaqAI TTAA 2 cut(s) 129, 515
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 4 cut(s) 25, 220, 399, 503
Sau96I GGNCC 2 cut(s) 395, 614
ScrFI CCNGG 2 cut(s) 511, 612
SexAI ACCWGGT 1 cut(s) 509
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 213, 456
SinI GGWCC 2 cut(s) 395, 614
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 7 cut(s) 6, 130, 244, 307, 387, 556, 598
SsiI CCGC 2 cut(s) 164, 603
SspI AATATT 1 cut(s) 519
SspMI CTAG 2 cut(s) 297, 446
StyD4I CCNGG 2 cut(s) 509, 610
TaaI ACNGT 3 cut(s) 106, 124, 569
TaiI ACGT 2 cut(s) 34, 413
TaqI TCGA 1 cut(s) 28
TaqII GACCGA 1 cut(s) 412
TasI AATT 7 cut(s) 6, 130, 244, 307, 387, 556, 598
TatI WGTACW 1 cut(s) 619
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 129, 515
Tru9I TTAA 2 cut(s) 129, 515
TscAI CASTG 2 cut(s) 129, 436
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 2 cut(s) 54, 569
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 2 cut(s) 129, 436
VpaK11BI GGWCC 2 cut(s) 395, 614
XapI RAATTY 2 cut(s) 6, 244
XceI RCATGY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XspI CTAG 2 cut(s) 297, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.