Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005619

Physical Location & Seq

Genomic Coordinates Forward (+)

1134220 .. 1136624

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGAAAAGTTTTGGACTCCCATTTCTTGGCTCTCACTGCCATTGTCACTGTGGCATATCAGTCGTTGTTCTTCGTAATCACTGCGCTTCTCAAGTTCGATAAAGTCACTGACTTTGCCGGAAGTACCAATTTTGTTATACTTGCAATACTCACTCTGGTTGTCAAGGGCTCATGGCATTTCAGACAGATAGTGTTGAGTTTGCTTGTGGTAATATGGGGTCTTCGTCTGGGACTGTTTCTCCTGATGAGAATTTTGCAATGGGGGGAGGATCGACGTTTTGATGAAATGCGAGCTAATCTTGGAAAACTGGCAGTATTCTGGATATTTCAGGCTGTCTGGGTATGGACTGTGAGTTTACCTGTAACAGTGGTTAATTCAAGCAACAAAACACCATCTCTTCAGGCTGCGGATCAAAAGCTGGTGTTCAAAAATTCTCCTCAAAATAGGGGAAAGTGGTGCAATGTTGGACTATGGAAATACACTAGGCATCCAAATTATTTTGGTGAGATATTCCTTTGGTGGGGAGTATTTGTGGCTTCCACACCTGTATTGGATGGTGCAGAGTGGCTGGTAATTCTTGGACCGATCTTTCTCACGTTGTTACTTCTTTTCCTCAGTGGCATACCATTGCTAGAGGAATCTGCAGATAAGAAGTATGGAAATGTGGACGGATATAGGCTCTATAAAAGATCAACCAGCCCTCTAATTCCGCTACCCCCGGTCCTGTACAAGAACTTGCCCTCGTGGTTCAAAGCAACTTTTCTCTTTGAATTTCCCCTGTATAGTCGTAATCTTCCTCAAGAACCACTGAACTGGTGTAGAACAAGCCCGATAGAAAGAAGCGACGAATTGAAGATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

288

Amino Acids

33.0

Weight (kDa)

9.56

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	24 - 138	1.6e-34	Protein of unknown function (DUF1295)
DUF1295	PF06966	137 - 233	5.5e-41	Protein of unknown function (DUF1295)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18180 AT1G18180 AT1G73650 AT1G73650 AT1G73650 AT1G73650 AT1G73650
fragaria_vesca	FvH4_5g17190
malus_domestica	MD06G1230700.v1.1 MD14G1235300.v1.1
prunus_persica	Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1
pyrus_communis	pycom04g01460 pycom06g20190 pycom14g19630
rosa_chinensis	RchiOBHm_Chr7g0178611
rosa_laevigata	RLG00000005432
rosa_rugosa	Rorug06G0418400 Rorug06G0418400 Rorug06G0418400 Rorug06G0418500 Rorug06G0418500
rosa_samantha	Rh7AG017100 Rh7BG016600 Rh7CG017300 Rh7DG017200
rosa_wichuraiana	Rw7G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	2 cut(s)	410, 713
AclWI	GGATC	2 cut(s)	279, 420
AcsI	RAATTY	3 cut(s)	252, 433, 773
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	127, 731
AfiI	CCNNNNNNNGG	2 cut(s)	28, 523
AgsI	TTSAA	5 cut(s)	381, 430, 754, 773, 856
AjuI	GAANNNNNNNTTGG	1 cut(s)	843
AluBI	AGCT	2 cut(s)	296, 421
AluI	AGCT	2 cut(s)	296, 421
AlwI	GGATC	2 cut(s)	279, 420
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	3 cut(s)	252, 433, 773
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	584, 724
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	584, 724
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	403, 551
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BcnI	CCSGG	1 cut(s)	722
BfaI	CTAG	2 cut(s)	486, 635
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	2 cut(s)	584, 724
BmgT120I	GGNCC	2 cut(s)	584, 724
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	2 cut(s)	77, 786
BpuMI	CCSGG	1 cut(s)	722
BsaJI	CCNNGG	1 cut(s)	720
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 523
Bse1I	ACTGG	2 cut(s)	315, 821
Bse3DI	GCAATG	3 cut(s)	266, 469, 629
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	2 cut(s)	490, 562
BseLI	CCNNNNNNNGG	2 cut(s)	28, 523
BseMI	GCAATG	3 cut(s)	266, 469, 629
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	2 cut(s)	315, 821
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	120, 722
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	28, 523
BsmFI	GGGAC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	271, 412, 588, 692
BspACI	CCGC	2 cut(s)	410, 713
BspCNI	CTCAG	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	2 cut(s)	279, 420
BsrDI	GCAATG	3 cut(s)	266, 469, 629
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	315, 821
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	4 cut(s)	271, 412, 588, 692
BssSI	CACGAG	1 cut(s)	745
Bst2BI	CACGAG	1 cut(s)	745
Bst4CI	ACNGT	4 cut(s)	52, 237, 352, 370
Bst6I	CTCTTC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	617
BstF5I	GGATG	2 cut(s)	490, 562
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	4 cut(s)	274, 415, 591, 695
BstMBI	GATC	4 cut(s)	271, 412, 588, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	490, 562
BtsI	GCAGTG	2 cut(s)	36, 81
BtsIMutI	CAGTG	7 cut(s)	36, 48, 81, 108, 375, 625, 809
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	584, 724
Csp6I	GTAC	2 cut(s)	126, 730
CviAII	CATG	1 cut(s)	174
CviQI	GTAC	2 cut(s)	126, 730
DdeI	CTNAG	1 cut(s)	617
DpnI	GATC	4 cut(s)	273, 414, 590, 694
DpnII	GATC	4 cut(s)	271, 412, 588, 692
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	584, 724
Eco57I	CTGAAG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	1 cut(s)	177
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	2 cut(s)	477, 569
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	486, 635
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	408
HapII	CCGG	2 cut(s)	120, 722
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	17, 641
HpaII	CCGG	2 cut(s)	120, 722
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	359, 670
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	3 cut(s)	244, 322, 803
Hpy8I	GTNNAC	2 cut(s)	359, 670
Hpy99I	CGWCG	2 cut(s)	279, 851
HpyCH4III	ACNGT	4 cut(s)	52, 237, 352, 370
HpyCH4IV	ACGT	2 cut(s)	277, 599
HpyCH4V	TGCA	5 cut(s)	146, 259, 462, 563, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	617
HpySE526I	ACGT	2 cut(s)	277, 599
Hsp92II	CATG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	4 cut(s)	271, 412, 588, 692
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	486, 635
MaeII	ACGT	2 cut(s)	277, 599
MaeIII	GTNAC	4 cut(s)	46, 106, 364, 603
MalI	GATC	4 cut(s)	273, 414, 590, 694
MboI	GATC	4 cut(s)	271, 412, 588, 692
MboII	GAAGA	4 cut(s)	64, 215, 392, 788
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	9 cut(s)	130, 252, 376, 433, 496, 576, 708, 773, 851
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	7 cut(s)	262, 450, 626, 631, 714, 754, 810
MseI	TTAA	1 cut(s)	375
MspI	CCGG	2 cut(s)	120, 722
MspR9I	CCNGG	1 cut(s)	722
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	722
NdeII	GATC	4 cut(s)	271, 412, 588, 692
NlaIII	CATG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	46, 106
PfeI	GAWTC	1 cut(s)	641
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	584, 724
PstI	CTGCAG	1 cut(s)	649
RsaI	GTAC	2 cut(s)	127, 731
RsaNI	GTAC	2 cut(s)	126, 730
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	4 cut(s)	271, 412, 588, 692
Sau96I	GGNCC	2 cut(s)	584, 724
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	6 cut(s)	280, 298, 364, 423, 550, 602
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	2 cut(s)	584, 724
SmlI	CTYRAG	2 cut(s)	92, 801
SmoI	CTYRAG	2 cut(s)	92, 801
Sse9I	AATT	9 cut(s)	130, 252, 376, 433, 496, 576, 708, 773, 851
SsiI	CCGC	2 cut(s)	410, 713
SspMI	CTAG	2 cut(s)	486, 635
StyD4I	CCNGG	1 cut(s)	720
TaaI	ACNGT	4 cut(s)	52, 237, 352, 370
TaiI	ACGT	2 cut(s)	280, 602
TaqI	TCGA	2 cut(s)	99, 274
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	9 cut(s)	130, 252, 376, 433, 496, 576, 708, 773, 851
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	7 cut(s)	43, 55, 88, 115, 375, 625, 816
TseFI	GTSAC	2 cut(s)	46, 106
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	46, 106
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	7 cut(s)	43, 55, 88, 115, 375, 625, 816
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	584, 724
XapI	RAATTY	3 cut(s)	252, 433, 773
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 550
XspI	CTAG	2 cut(s)	486, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.