Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005619

Physical Location & Seq

Genomic Coordinates Forward (+)

36019843 .. 36022721

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1230700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGAAGAGTCTTGGATTCCAATTTCTTAGCTTTCACTGCCATTGTCACTGTGGGGTATCAGTTGTTGTTCTTCATAGTCACTGCTCTTCTCAAGTTCGACAAAGTCACTGACTTTGCTGGAAGTACCAATTTTGTTATCCTTGCTATTCTGACTTTGGTTGTCAAAGGTTCATGGCATTTTAGACAGGTAGTGTTGAGTTTGCTTGTGATAATATGGGGTCTTCGCCTCGGGTTTTTTCTACTGATGAGGATTTTGCAATGGGGAGAGGATCGGCGTTTTGATGAAATACGTGGTAATCTAGGGAAGTTAGCAGTTTTCTGGATATTTCAGGCTATGTGGGTATGGACTGTGAGTTTACCTGTAACAGTTGCTAATGCAAGCAACAGAACGCCATTGATCCAAGCTGCAGACATAATTGGATGGATTATGTGGTTTGTCGGTTTTTCAGTTGAAGCTGCAGCTGATCAGCAAAAGTTAACTTTCAAAAGTTCTCCACAAAATAGAGGAAAATGGTGCAATGTCGGACTATGGAAATACACTCGTCATCCAAACTATTTTGGTGAGATATTCCTTTGGTGGGGAGTATTTGTGGCATCCACACCCGTATTGGAAGGTGCAGAGTGGCTGGTGATTCTTGGACCAATCTTTCTCACGTTGTTGCTTCTTTTCATCAGTGGCATCCCGTTGCTTGAGAAATCTGCAGATAAGAAGTTTGGAAACGTAGACGAATATAGGCTGTATAAAAGATCGACTAGCCCTCTGATACCGCTACCTCCAGTTATATACAAGAACTTGCCGTTGTGGTTCAAAACAACTTTTCTCTTTGAGTTTCCTCTCTACAGCCGTAATCTTCCTCGAGAAAAGCCAAACTGGTGTAGAACAAGCCGGGTAGAACGAAGAAGCGACGGATTGAAGATCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

309

Amino Acids

35.49

Weight (kDa)

9.89

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	24 - 252	7.4e-90	Protein of unknown function (DUF1295)
Steroid_dh	PF02544	134 - 201	7.3e-06	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18180 AT1G18180 AT1G73650 AT1G73650 AT1G73650 AT1G73650 AT1G73650
fragaria_vesca	FvH4_5g17190
malus_domestica	MD06G1230700.v1.1 MD14G1235300.v1.1
prunus_persica	Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1
pyrus_communis	pycom04g01460 pycom06g20190 pycom14g19630
rosa_chinensis	RchiOBHm_Chr7g0178611
rosa_laevigata	RLG00000005432
rosa_rugosa	Rorug06G0418400 Rorug06G0418400 Rorug06G0418400 Rorug06G0418500 Rorug06G0418500
rosa_samantha	Rh7AG017100 Rh7BG016600 Rh7CG017300 Rh7DG017200
rosa_wichuraiana	Rw7G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	726
AciI	CCGC	1 cut(s)	770
AclWI	GGATC	2 cut(s)	279, 394
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	455, 487, 811, 916
AluBI	AGCT	4 cut(s)	32, 407, 458, 464
AluI	AGCT	4 cut(s)	32, 407, 458, 464
AlwI	GGATC	2 cut(s)	279, 394
Ama87I	CYCGRG	2 cut(s)	230, 858
ApeKI	GCWGC	3 cut(s)	407, 458, 461
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	2 cut(s)	575, 643
AvaI	CYCGRG	2 cut(s)	230, 858
AvaII	GGWCC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	394, 445, 473
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	2 cut(s)	784, 831
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	890
BfaI	CTAG	3 cut(s)	302, 756, 925
BfmI	CTRYAG	4 cut(s)	408, 459, 702, 841
BisI	GCNGC	3 cut(s)	408, 459, 462
BlsI	GCNGC	3 cut(s)	409, 460, 463
Bme1390I	CCNGG	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	2 cut(s)	230, 858
BmgT120I	GGNCC	1 cut(s)	641
BmrFI	CCNGG	1 cut(s)	890
BmsI	GCATC	2 cut(s)	605, 690
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	77, 713
BpuMI	CCSGG	1 cut(s)	890
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	779, 878
Bse3DI	GCAATG	2 cut(s)	266, 526
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	4 cut(s)	428, 547, 596, 681
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	266, 526
BseNI	ACTGG	2 cut(s)	779, 878
BseXI	GCAGC	3 cut(s)	394, 445, 473
BsgI	GTGCAG	1 cut(s)	639
BsiHKCI	CYCGRG	2 cut(s)	230, 858
BsiSI	CCGG	1 cut(s)	889
BslI	CCNNNNNNNGG	1 cut(s)	580
BsoBI	CYCGRG	2 cut(s)	230, 858
Bsp143I	GATC	5 cut(s)	271, 399, 466, 749, 918
BspACI	CCGC	1 cut(s)	770
BspMAI	CTGCAG	3 cut(s)	412, 463, 706
BspPI	GGATC	2 cut(s)	279, 394
BspQI	GCTCTTC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	266, 526
BsrI	ACTGG	2 cut(s)	779, 878
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	271, 399, 466, 749, 918
Bst4CI	ACNGT	3 cut(s)	52, 352, 370
Bst6I	CTCTTC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	4 cut(s)	428, 547, 596, 681
BstKTI	GATC	5 cut(s)	274, 402, 469, 752, 921
BstMBI	GATC	5 cut(s)	271, 399, 466, 749, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	4 cut(s)	408, 459, 702, 841
BstV1I	GCAGC	3 cut(s)	394, 445, 473
BstV2I	GAAGAC	1 cut(s)	215
BtsCI	GGATG	4 cut(s)	428, 547, 596, 681
BtsI	GCAGTG	2 cut(s)	36, 81
BtsIMutI	CAGTG	5 cut(s)	36, 48, 81, 108, 682
Cac8I	GCNNGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	174
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	5 cut(s)	273, 401, 468, 751, 920
DpnII	GATC	5 cut(s)	271, 399, 466, 749, 918
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	641
Eco88I	CYCGRG	2 cut(s)	230, 858
FaeI	CATG	1 cut(s)	177
FatI	CATG	1 cut(s)	173
FbaI	TGATCA	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	408, 459, 462
FokI	GGATG	4 cut(s)	435, 534, 583, 668
Fsp4HI	GCNGC	3 cut(s)	408, 459, 462
FspBI	CTAG	3 cut(s)	302, 756, 925
GluI	GCNGC	3 cut(s)	408, 459, 462
GsuI	CTGGAG	1 cut(s)	762
HapII	CCGG	1 cut(s)	889
Hin1II	CATG	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	3 cut(s)	9, 17, 634
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	889
HphI	GGTGA	2 cut(s)	575, 643
Hpy166II	GTNNAC	3 cut(s)	359, 480, 727
Hpy188I	TCNGA	3 cut(s)	153, 527, 765
Hpy188III	TCNNGA	2 cut(s)	322, 860
Hpy8I	GTNNAC	3 cut(s)	359, 480, 727
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	1 cut(s)	608
HpyCH4III	ACNGT	3 cut(s)	52, 352, 370
HpyCH4IV	ACGT	3 cut(s)	292, 656, 723
HpyCH4V	TGCA	7 cut(s)	259, 380, 410, 461, 519, 620, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	3 cut(s)	292, 656, 723
Hsp92II	CATG	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	271, 399, 466, 749, 918
LguI	GCTCTTC	1 cut(s)	93
LpnPI	CCDG	9 cut(s)	105, 173, 307, 317, 375, 614, 792, 859, 902
Lsp1109I	GCAGC	3 cut(s)	394, 445, 473
LweI	GCATC	2 cut(s)	605, 690
MaeI	CTAG	3 cut(s)	302, 756, 925
MaeII	ACGT	3 cut(s)	292, 656, 723
MaeIII	GTNAC	4 cut(s)	46, 79, 106, 364
MalI	GATC	5 cut(s)	273, 401, 468, 751, 920
MboI	GATC	5 cut(s)	271, 399, 466, 749, 918
MboII	GAAGA	6 cut(s)	18, 64, 80, 215, 845, 912
MluCI	AATT	3 cut(s)	22, 130, 417
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	8 cut(s)	239, 243, 262, 500, 771, 786, 846, 867
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	889
MspR9I	CCNGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	890
NdeII	GATC	5 cut(s)	271, 399, 466, 749, 918
NlaIII	CATG	1 cut(s)	177
NmuCI	GTSAC	3 cut(s)	46, 79, 106
PaeR7I	CTCGAG	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	17, 634
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	409, 460, 463
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	641
PstI	CTGCAG	3 cut(s)	412, 463, 706
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	3 cut(s)	408, 459, 462
Sau3AI	GATC	5 cut(s)	271, 399, 466, 749, 918
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	890
SfaNI	GCATC	2 cut(s)	605, 690
SfcI	CTRYAG	4 cut(s)	408, 459, 702, 841
Sfr274I	CTCGAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	858
SmlI	CTYRAG	3 cut(s)	92, 692, 858
SmoI	CTYRAG	3 cut(s)	92, 692, 858
Sse9I	AATT	3 cut(s)	22, 130, 417
SsiI	CCGC	1 cut(s)	770
SspMI	CTAG	3 cut(s)	302, 756, 925
StyD4I	CCNGG	1 cut(s)	888
TaaI	ACNGT	3 cut(s)	52, 352, 370
TaiI	ACGT	3 cut(s)	295, 659, 726
TaqI	TCGA	3 cut(s)	99, 752, 859
TasI	AATT	3 cut(s)	22, 130, 417
TfiI	GAWTC	2 cut(s)	17, 634
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	5 cut(s)	43, 55, 88, 115, 682
TseFI	GTSAC	3 cut(s)	46, 79, 106
TseI	GCWGC	3 cut(s)	407, 458, 461
Tsp45I	GTSAC	3 cut(s)	46, 79, 106
TspDTI	ATGAA	4 cut(s)	64, 162, 300, 661
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	5 cut(s)	43, 55, 88, 115, 682
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 607
XhoI	CTCGAG	1 cut(s)	858
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	3 cut(s)	302, 756, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.