Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005619

Physical Location & Seq

Genomic Coordinates Forward (+)

1057082 .. 1059497

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAACAGTTTTGGACTCCCATCTCTTGGCTCTCACTGCCATTGTCACTGTGGCATATCAGTCGTTGTTCTTCGTAATCACTGCGCTTCTCAAGTTCGATAAAGTCACTGACTTTGCCGGAAGTACCAATTTTGTTATACTTGCAATACTCACTCTGGTTGTCAAGGGCTCATGGCATTTCAGACAGATAGTGTTGAGTTTGCTTGTGGTAATATGGGGTCTTCGTCTGGGACTGTTTCTCCTGATGAGAATTTTGCAATGGGGGGAGGATCGACGTTTTGATGAAATGCGAGCTAATCTTGGAAAACTGGCAGTATTCTGGATATTTCAGGCTGTCTGGGTATGGACTGTGAGTTTACCTGTAACAGTGGTTAATTCAAGCAACAAAACACCATCTCTTCAAGCTGCGGACTTTATTGGATGGATTATGTGGTCTATTGGTTTTTTGGTTGAAGCTACAGCTGATCAGCAAAAGCTGGTGTTCAAAAATTCTCCTCAAAATAGGGGAAAGTGGTGCAATGTTGGACTATGGAAATACACTAGGCATCCAAATTATTTTGGTGAGATATTCCTTTGGTGGGGAGTATTTGTGGCTTCCACACCTGTATTGGATGGTGCAGAGTGGCTGGTAATTCTTGGACCGATCTTTCTCACGTTGTTACTTCTTTTCCTCAGTGGCATACCATTGCTAGAGGAATCTGCAGATAAGAAGTATGGAAATGTGGACGGATATAGGCTCTATAAAAGATCAACCAGCCCTCTAATTCCGCTGCCCCCGGTCCTGTACAAGAACTTGCCCTCGTGGTTCAAAGCAACTTTTCTCTTTGAATTTCCCCTGTATAGTCGTAATCTTCCTCAAGAACCACTGAACTGGTGTAGAACAAGCCCGATAGAAAGAAGCGACGAATTGAAGATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

307

Amino Acids

35.11

Weight (kDa)

9.28

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	24 - 252	3e-91	Protein of unknown function (DUF1295)
Steroid_dh	PF02544	135 - 201	6.7e-06	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18180 AT1G18180 AT1G73650 AT1G73650 AT1G73650 AT1G73650 AT1G73650
fragaria_vesca	FvH4_5g17190
malus_domestica	MD06G1230700.v1.1 MD14G1235300.v1.1
prunus_persica	Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1 Prupe.5G232000_v2.0.a1
pyrus_communis	pycom04g01460 pycom06g20190 pycom14g19630
rosa_chinensis	RchiOBHm_Chr7g0178611
rosa_laevigata	RLG00000005432
rosa_rugosa	Rorug06G0418400 Rorug06G0418400 Rorug06G0418400 Rorug06G0418500 Rorug06G0418500
rosa_samantha	Rh7AG017100 Rh7BG016600 Rh7CG017300 Rh7DG017200
rosa_wichuraiana	Rw7G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	2 cut(s)	410, 770
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	3 cut(s)	252, 490, 830
AfaI	GTAC	2 cut(s)	127, 788
AfiI	CCNNNNNNNGG	2 cut(s)	28, 580
AgsI	TTSAA	7 cut(s)	381, 404, 455, 487, 811, 830, 913
AjuI	GAANNNNNNNTTGG	1 cut(s)	900
AluBI	AGCT	5 cut(s)	296, 407, 458, 464, 478
AluI	AGCT	5 cut(s)	296, 407, 458, 464, 478
AlwI	GGATC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	407, 772
ApoI	RAATTY	3 cut(s)	252, 490, 830
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	641, 781
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	641, 781
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	394, 759
BccI	CCATC	4 cut(s)	30, 403, 417, 608
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	779
BfaI	CTAG	2 cut(s)	543, 692
BfmI	CTRYAG	2 cut(s)	459, 702
BisI	GCNGC	2 cut(s)	408, 773
BlsI	GCNGC	2 cut(s)	409, 774
Bme1390I	CCNGG	1 cut(s)	779
Bme18I	GGWCC	2 cut(s)	641, 781
BmgT120I	GGNCC	2 cut(s)	641, 781
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	2 cut(s)	77, 843
BpuMI	CCSGG	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	777
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 580
Bse1I	ACTGG	2 cut(s)	315, 878
Bse3DI	GCAATG	3 cut(s)	266, 526, 686
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	3 cut(s)	428, 547, 619
BseLI	CCNNNNNNNGG	2 cut(s)	28, 580
BseMI	GCAATG	3 cut(s)	266, 526, 686
BseMII	CTCAG	1 cut(s)	688
BseNI	ACTGG	2 cut(s)	315, 878
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	394, 759
BsgI	GTGCAG	1 cut(s)	639
BsiSI	CCGG	2 cut(s)	120, 779
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	28, 580
BsmFI	GGGAC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	4 cut(s)	271, 466, 645, 749
BspACI	CCGC	2 cut(s)	410, 770
BspCNI	CTCAG	1 cut(s)	687
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	3 cut(s)	266, 526, 686
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	2 cut(s)	315, 878
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	4 cut(s)	271, 466, 645, 749
BssSI	CACGAG	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	802
Bst4CI	ACNGT	5 cut(s)	10, 52, 237, 352, 370
Bst6I	CTCTTC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	428, 547, 619
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	4 cut(s)	274, 469, 648, 752
BstMBI	GATC	4 cut(s)	271, 466, 645, 749
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	777
BstSFI	CTRYAG	2 cut(s)	459, 702
BstV1I	GCAGC	2 cut(s)	394, 759
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	873
BtsCI	GGATG	3 cut(s)	428, 547, 619
BtsI	GCAGTG	2 cut(s)	36, 81
BtsIMutI	CAGTG	7 cut(s)	36, 48, 81, 108, 375, 682, 866
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	641, 781
Csp6I	GTAC	2 cut(s)	126, 787
CviAII	CATG	1 cut(s)	174
CviQI	GTAC	2 cut(s)	126, 787
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	4 cut(s)	273, 468, 647, 751
DpnII	GATC	4 cut(s)	271, 466, 645, 749
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	641, 781
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	1 cut(s)	177
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	173
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	408, 773
FokI	GGATG	3 cut(s)	435, 534, 626
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	408, 773
FspBI	CTAG	2 cut(s)	543, 692
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	408, 773
HapII	CCGG	2 cut(s)	120, 779
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	17, 698
HpaII	CCGG	2 cut(s)	120, 779
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	2 cut(s)	359, 727
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	3 cut(s)	244, 322, 860
Hpy8I	GTNNAC	2 cut(s)	359, 727
Hpy99I	CGWCG	2 cut(s)	279, 908
HpyCH4III	ACNGT	5 cut(s)	10, 52, 237, 352, 370
HpyCH4IV	ACGT	2 cut(s)	277, 656
HpyCH4V	TGCA	5 cut(s)	146, 259, 519, 620, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	2 cut(s)	277, 656
Hsp92II	CATG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	271, 466, 645, 749
Lsp1109I	GCAGC	2 cut(s)	394, 759
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	2 cut(s)	543, 692
MaeII	ACGT	2 cut(s)	277, 656
MaeIII	GTNAC	4 cut(s)	46, 106, 364, 660
MalI	GATC	4 cut(s)	273, 468, 647, 751
MboI	GATC	4 cut(s)	271, 466, 645, 749
MboII	GAAGA	4 cut(s)	64, 215, 392, 845
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	9 cut(s)	130, 252, 376, 490, 553, 633, 765, 830, 908
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	262, 507, 683, 688, 771, 811, 867
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	464, 772
MspI	CCGG	2 cut(s)	120, 779
MspR9I	CCNGG	1 cut(s)	779
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	779
NdeII	GATC	4 cut(s)	271, 466, 645, 749
NlaIII	CATG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	46, 106
PfeI	GAWTC	1 cut(s)	698
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	409, 774
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	641, 781
PstI	CTGCAG	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	127, 788
RsaNI	GTAC	2 cut(s)	126, 787
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	408, 773
Sau3AI	GATC	4 cut(s)	271, 466, 645, 749
Sau96I	GGNCC	2 cut(s)	641, 781
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	280, 298, 364, 409, 460, 466, 480, 607, 659
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	2 cut(s)	459, 702
SinI	GGWCC	2 cut(s)	641, 781
SmlI	CTYRAG	2 cut(s)	92, 858
SmoI	CTYRAG	2 cut(s)	92, 858
Sse9I	AATT	9 cut(s)	130, 252, 376, 490, 553, 633, 765, 830, 908
SsiI	CCGC	2 cut(s)	410, 770
SspMI	CTAG	2 cut(s)	543, 692
StyD4I	CCNGG	1 cut(s)	777
TaaI	ACNGT	5 cut(s)	10, 52, 237, 352, 370
TaiI	ACGT	2 cut(s)	280, 659
TaqI	TCGA	2 cut(s)	99, 274
TaqII	GACCGA	1 cut(s)	658
TasI	AATT	9 cut(s)	130, 252, 376, 490, 553, 633, 765, 830, 908
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	7 cut(s)	43, 55, 88, 115, 375, 682, 873
TseFI	GTSAC	2 cut(s)	46, 106
TseI	GCWGC	2 cut(s)	407, 772
Tsp45I	GTSAC	2 cut(s)	46, 106
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	7 cut(s)	43, 55, 88, 115, 375, 682, 873
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	641, 781
XapI	RAATTY	3 cut(s)	252, 490, 830
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 607
XspI	CTAG	2 cut(s)	543, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.