Rh7CG017300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005619
Physical Location & Seq
Forward (+)
1297393 .. 1301288
3896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG017300.1

Sequence Viewer

Length: 693 bp
ATGGGAAAAGTTTTGGACTCCCATTTCTTGGCTCTCACTGCCATTGTCACTGTGGCATATCAGTCGTTGTTCTTCGTAATCACTGCGCTTCTCAAGTTCGATAAAGTCACTGACTTTGCCGGAAGTACCAATTTTGTTATACTTGCAATACTCACTCTGGTTGTCAAGGGCTCATGGCATTTCAGACAGATAGTGTTGAGTTTGCTTGTGGTAATATGGGGTCTTCGTCTGGGACTGTTTCTCCTGATGAGAATTTTGCAATGGGGGGAGGATCGACGTTTTGATGAAATGCGAGCTAATCTTGGAAAACTGGCAGTATTCTGGATATTTCAGGCTGTCTGGGTATGGACTGTGAGTTTACCTGTAACAGTGGTTAATTCAAGCAACAAAACACCATCTCTTCAAGCTGCGGACGTTATTGGATGGATTATGTGGTCTGTTGGTTTTTTGGTTGAAGCTACAGCTGATCAGCAAAAGCTGGTGTTCAAAAACTCTCCTCAAAATAGGGGAAAGTGGTGCATTGTTGGACTATGGAAATACACTAGGCATCCAAATTATTTTGGTGAGGTTAGTATTCTGATGTCAGTTAATGCCACTATTTTGGAACTGATGCTACACTTTCTGTTTAATGTTACTTCAATTGTATACAGCTCTTGCATTGAACATTTTAGAACCCTGAATATGACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

230

Amino Acids

26.24

Weight (kDa)

9.51

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 24 - 203 4.1e-65 Protein of unknown function (DUF1295)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AccI GTMKAC 1 cut(s) 645
AciI CCGC 1 cut(s) 410
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 6 cut(s) 381, 404, 455, 487, 639, 662
AluBI AGCT 6 cut(s) 296, 407, 458, 464, 478, 651
AluI AGCT 6 cut(s) 296, 407, 458, 464, 478, 651
AlwI GGATC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 575
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 403, 417
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 1 cut(s) 466
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
BmsI GCATC 2 cut(s) 556, 600
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 266
BseGI GGATG 2 cut(s) 428, 547
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 486
BseXI GCAGC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 271, 466
BspACI CCGC 1 cut(s) 410
BspPI GGATC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 1 cut(s) 315
BssMI GATC 2 cut(s) 271, 466
BssNAI GTATAC 1 cut(s) 646
Bst1107I GTATAC 1 cut(s) 646
Bst4CI ACNGT 4 cut(s) 52, 237, 352, 370
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 294
BstF5I GGATG 2 cut(s) 428, 547
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 274, 469
BstMBI GATC 2 cut(s) 271, 466
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 601
BstZ17I GTATAC 1 cut(s) 646
BtsCI GGATG 2 cut(s) 428, 547
BtsI GCAGTG 2 cut(s) 36, 81
BtsIMutI CAGTG 5 cut(s) 36, 48, 81, 108, 375
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 126
CviAII CATG 2 cut(s) 174, 690
CviJI RGCY 9 cut(s) 32, 171, 296, 335, 407, 458, 464, 478, 651
CviKI_1 RGCY 9 cut(s) 32, 171, 296, 335, 407, 458, 464, 478, 651
CviQI GTAC 1 cut(s) 126
DpnI GATC 2 cut(s) 273, 468
DpnII GATC 2 cut(s) 271, 466
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 2 cut(s) 177, 693
FaqI GGGAC 1 cut(s) 246
FatI CATG 2 cut(s) 173, 689
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 435, 534
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 408
HapII CCGG 1 cut(s) 120
HhaI GCGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 177, 693
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 2 cut(s) 359, 646
Hpy188I TCNGA 2 cut(s) 185, 579
Hpy188III TCNNGA 2 cut(s) 244, 322
Hpy8I GTNNAC 2 cut(s) 359, 646
Hpy99I CGWCG 1 cut(s) 279
HpyCH4III ACNGT 4 cut(s) 52, 237, 352, 370
HpyCH4IV ACGT 2 cut(s) 277, 414
HpyCH4V TGCA 4 cut(s) 146, 259, 519, 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 277, 414
Hsp92II CATG 2 cut(s) 177, 693
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 2 cut(s) 271, 466
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 556, 600
MaeI CTAG 1 cut(s) 543
MaeII ACGT 2 cut(s) 277, 414
MaeIII GTNAC 4 cut(s) 46, 106, 364, 631
MalI GATC 2 cut(s) 273, 468
MboI GATC 2 cut(s) 271, 466
MboII GAAGA 3 cut(s) 64, 215, 392
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 5 cut(s) 130, 252, 376, 553, 639
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 3 cut(s) 262, 507, 559
MseI TTAA 3 cut(s) 375, 588, 627
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 271, 466
NlaIII CATG 2 cut(s) 177, 693
NmuCI GTSAC 2 cut(s) 46, 106
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 375, 588, 627
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 2 cut(s) 271, 466
SchI GAGTC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 2 cut(s) 556, 600
SfcI CTRYAG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 5 cut(s) 130, 252, 376, 553, 639
SsiI CCGC 1 cut(s) 410
SspMI CTAG 1 cut(s) 543
TaaI ACNGT 4 cut(s) 52, 237, 352, 370
TaiI ACGT 2 cut(s) 280, 417
TaqI TCGA 2 cut(s) 99, 274
TasI AATT 5 cut(s) 130, 252, 376, 553, 639
Tru1I TTAA 3 cut(s) 375, 588, 627
Tru9I TTAA 3 cut(s) 375, 588, 627
TscAI CASTG 5 cut(s) 43, 55, 88, 115, 375
TseFI GTSAC 2 cut(s) 46, 106
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 2 cut(s) 46, 106
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 5 cut(s) 43, 55, 88, 115, 375
Van91I CCANNNNNTGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.