Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Reverse (-)

6418838 .. 6421188

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCAGTTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAAGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAGAAGACATTGGACTACGCATGTGGTGCAGGAGCTGATTGTGGACCCATTCACCAGACCGGGCCTTGCTTTAACCCTAACACCGTCAAGTCTCACTGCTCCTACGCCGTCAACAGCTTCTTTCAGAAGAAAGGTCAGTCTCTGGGCACTTGTGACTTTGCTGGCACAGCCACCTTCTCAGCCTCTGATCCCAGCTACACTACTTGTCCTTTCCCTGCAAGTGCCAGTGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCCTACAACAACTAATACAAGACCCTACACAATCACACCATCAACAGGAGGAGGTTTGGGAATACCGTCTGGTATTAACCCGGATTACACAGATCCATCCTTTGGATTCAAACTCCAAAGCCCAAGATTTGGATTCATAGTCTTGTTCACTCTCTTCCTACCCTTTTACTTGTTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

184

Amino Acids

19.34

Weight (kDa)

7.54

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	20 - 91	2.8e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	476, 503
AclWI	GGATC	2 cut(s)	281, 461
AcoI	YGGCCR	1 cut(s)	33
AfiI	CCNNNNNNNGG	3 cut(s)	419, 476, 503
AgsI	TTSAA	1 cut(s)	484
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	4 cut(s)	134, 216, 294, 552
AluI	AGCT	4 cut(s)	134, 216, 294, 552
Alw26I	GTCTC	2 cut(s)	195, 243
AlwI	GGATC	2 cut(s)	281, 461
AlwNI	CAGNNNCTG	3 cut(s)	134, 241, 284
AoxI	GGCC	2 cut(s)	33, 161
ApeKI	GCWGC	1 cut(s)	97
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspS9I	GGNCC	2 cut(s)	143, 161
AsuC2I	CCSGG	2 cut(s)	160, 455
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	2 cut(s)	421, 478
BceAI	ACGGC	1 cut(s)	191
BcnI	CCSGG	2 cut(s)	160, 455
BcoDI	GTCTC	2 cut(s)	195, 243
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	160, 455
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	143, 161
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	160, 455
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	160, 455
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	419, 476, 503
Bse1I	ACTGG	2 cut(s)	324, 347
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	3 cut(s)	419, 476, 503
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	324, 347
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	35, 163
BsiSI	CCGG	2 cut(s)	159, 455
BslFI	GGGAC	3 cut(s)	70, 349, 359
BslI	CCNNNNNNNGG	3 cut(s)	419, 476, 503
BsmAI	GTCTC	2 cut(s)	195, 243
BsmFI	GGGAC	3 cut(s)	70, 349, 359
BsnI	GGCC	2 cut(s)	35, 163
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	286, 466
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	2 cut(s)	35, 163
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	281, 461
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	324, 347
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	286, 466
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	184, 441
Bst6I	CTCTTC	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	2 cut(s)	289, 469
BstMAI	GTCTC	2 cut(s)	195, 243
BstMBI	GATC	2 cut(s)	286, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 266
BstNSI	RCATGY	1 cut(s)	123
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	158, 453
BstSFI	CTRYAG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	35, 163
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	470
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	193, 331, 354
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	3 cut(s)	134, 241, 284
Cfr13I	GGNCC	2 cut(s)	143, 161
CviAII	CATG	3 cut(s)	37, 60, 120
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	2 cut(s)	288, 468
DpnII	GATC	2 cut(s)	286, 466
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	40, 63, 123
FaiI	YATR	5 cut(s)	38, 61, 70, 121, 512
FaqI	GGGAC	3 cut(s)	70, 349, 359
FatI	CATG	3 cut(s)	36, 59, 119
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	35, 163
HapII	CCGG	2 cut(s)	159, 455
Hin1II	CATG	3 cut(s)	40, 63, 123
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	343, 372, 480, 507
HpaII	CCGG	2 cut(s)	159, 455
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	143, 211, 522
Hpy188I	TCNGA	2 cut(s)	225, 286
Hpy8I	GTNNAC	3 cut(s)	143, 211, 522
HpyAV	CCTTC	3 cut(s)	71, 283, 372
HpyCH4III	ACNGT	2 cut(s)	184, 441
HpyCH4V	TGCA	4 cut(s)	72, 100, 128, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 266
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	3 cut(s)	40, 63, 123
Kzo9I	GATC	2 cut(s)	286, 466
LmnI	GCTCC	2 cut(s)	131, 203
Lsp1109I	GCAGC	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	44, 251, 349
MalI	GATC	2 cut(s)	288, 468
MboI	GATC	2 cut(s)	286, 466
MboII	GAAGA	3 cut(s)	115, 238, 520
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	337, 381
MnlI	CCTC	4 cut(s)	82, 292, 416, 419
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	3 cut(s)	83, 171, 450
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	2 cut(s)	159, 455
MspR9I	CCNGG	2 cut(s)	160, 455
MwoI	GCNNNNNNNGC	2 cut(s)	125, 266
NciI	CCSGG	2 cut(s)	160, 455
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	286, 466
NlaIII	CATG	3 cut(s)	40, 63, 123
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	3 cut(s)	44, 251, 349
NspI	RCATGY	1 cut(s)	123
OliI	CACNNNNGTG	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	480, 507
PflMI	CCANNNNNTGG	2 cut(s)	476, 503
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	2 cut(s)	337, 380
PpsI	GAGTC	2 cut(s)	337, 380
PshAI	GACNNNNGTC	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	143, 161
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	3 cut(s)	134, 241, 284
PsuI	RGATCY	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	83, 171, 450
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	286, 466
Sau96I	GGNCC	2 cut(s)	143, 161
SchI	GAGTC	2 cut(s)	337, 381
ScrFI	CCNGG	2 cut(s)	160, 455
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	8 cut(s)	136, 218, 235, 275, 296, 364, 430, 554
SfcI	CTRYAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	158, 453
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	184, 441
TaqI	TCGA	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	480, 507
Tru1I	TTAA	3 cut(s)	83, 171, 450
Tru9I	TTAA	3 cut(s)	83, 171, 450
TscAI	CASTG	3 cut(s)	200, 331, 354
TseFI	GTSAC	3 cut(s)	44, 251, 349
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	3 cut(s)	44, 251, 349
TspDTI	ATGAA	1 cut(s)	499
TspRI	CASTG	3 cut(s)	200, 331, 354
Van91I	CCANNNNNTGG	2 cut(s)	476, 503
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.