Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Reverse (-)

64949791 .. 64953160

Gene Structure 3370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTGTTCTAGCTTTTGCAGCTTTGCTTTTCTTGGCCATGGCTGGCCAGTCAAGTGCCAATTGGTGTGTGTGCAAGAGTGGGAGTGATGCAGTATTGCAGAAGACATTGGACTATGCCTGTGGAGCTGGGGCTGACTGTAACCCCATACATCCAAATGGGGCTTGCTACAACCCTAACACTGTTAAAGCTCACTGCGACTATGCTGTCAACAGCTATTTCCAGAAGAAGGGCCAAGCTCAAGGCACCTGTGACTTTGCCGGCACCGCAACCCCTGTTACAACCGATCCCAGCGTTACTGGTTGTGTTTTCCCATCTAGCGCCAGTTCTTCCGGCAGTACGACTCCAAGTACCGGCACAACCACCCCAAGTACCGGCACGACCACCCCAACCACCGGCACAACACCCACAAGTACCAACACCACACCAACAACCACTGGAACAACTACCGGAACAACCACTGGGACAACCACCGGTGCCACTCCATACACTGCAACTCCTGGAGTATTCGGAGTAGGGCCATCTGGAGCTGGCATCACGGATGACAGTGCTGGGATTAGACTCATTGACACTAGTTTGTTCTCTTCTTCCGTAACCTTATTCTTTTCAAGCTTGATGCTTTGGTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

211

Amino Acids

21.0

Weight (kDa)

4.9

Isoelectric Point (pI)

19.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	22 - 91	5.6e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	3 cut(s)	245, 263, 476
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	36, 46
AfaI	GTAC	4 cut(s)	340, 352, 373, 415
AfiI	CCNNNNNNNGG	4 cut(s)	229, 353, 374, 395
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	609
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	8 cut(s)	14, 23, 128, 191, 216, 239, 530, 612
AluI	AGCT	8 cut(s)	14, 23, 128, 191, 216, 239, 530, 612
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	4 cut(s)	36, 46, 232, 518
ApeKI	GCWGC	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	232, 518
BalI	TGGCCA	2 cut(s)	38, 48
BanI	GGYRCC	3 cut(s)	245, 263, 476
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	322, 529
BciT130I	CCWGG	1 cut(s)	501
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	3 cut(s)	11, 318, 573
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	232, 518
BmiI	GGNNCC	3 cut(s)	247, 265, 478
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	3 cut(s)	79, 543, 606
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	522, 546
BpuEI	CTTGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	2 cut(s)	449, 473
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 353, 374, 395
Bse118I	RCCGGY	5 cut(s)	260, 353, 374, 395, 473
Bse1I	ACTGG	5 cut(s)	49, 304, 324, 442, 466
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	151, 547
BseLI	CCNNNNNNNGG	4 cut(s)	229, 353, 374, 395
BseNI	ACTGG	5 cut(s)	49, 304, 324, 442, 466
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	3 cut(s)	128, 290, 551
BshFI	GGCC	4 cut(s)	38, 48, 234, 520
BshNI	GGYRCC	3 cut(s)	245, 263, 476
BshTI	ACCGGT	1 cut(s)	473
BsiSI	CCGG	7 cut(s)	261, 333, 354, 375, 396, 450, 474
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	4 cut(s)	229, 353, 374, 395
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	4 cut(s)	38, 48, 234, 520
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	4 cut(s)	38, 48, 234, 520
BspLI	GGNNCC	3 cut(s)	247, 265, 478
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	3 cut(s)	245, 263, 476
BsrFI	RCCGGY	5 cut(s)	260, 353, 374, 395, 473
BsrI	ACTGG	5 cut(s)	49, 304, 324, 442, 466
BssAI	RCCGGY	5 cut(s)	260, 353, 374, 395, 473
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	140, 184, 548
Bst6I	CTCTTC	1 cut(s)	589
BstC8I	GCNNGC	4 cut(s)	46, 166, 262, 532
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	151, 547
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 125, 266
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	4 cut(s)	38, 48, 234, 520
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	151, 547
BtsI	GCAGTG	2 cut(s)	193, 489
BtsIMutI	CAGTG	6 cut(s)	180, 193, 435, 459, 489, 553
Cac8I	GCNNGC	4 cut(s)	46, 166, 262, 532
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	5 cut(s)	260, 353, 374, 395, 473
Cfr13I	GGNCC	2 cut(s)	232, 518
Csp6I	GTAC	4 cut(s)	339, 351, 372, 414
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	4 cut(s)	339, 351, 372, 414
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	36, 46
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	5 cut(s)	41, 117, 149, 204, 487
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	2 cut(s)	138, 554
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	11, 318, 573
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	21
GsaI	CCCAGC	3 cut(s)	132, 294, 555
GsuI	CTGGAG	2 cut(s)	522, 546
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	4 cut(s)	38, 48, 234, 520
HapII	CCGG	7 cut(s)	261, 333, 354, 375, 396, 450, 474
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	2 cut(s)	343, 561
HpaII	CCGG	7 cut(s)	261, 333, 354, 375, 396, 450, 474
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	512
Hpy188III	TCNNGA	2 cut(s)	223, 525
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	140, 184, 548
HpyCH4V	TGCA	5 cut(s)	20, 75, 92, 100, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 125, 266
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	125, 527
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	3 cut(s)	79, 543, 606
MaeI	CTAG	3 cut(s)	11, 318, 573
MaeIII	GTNAC	5 cut(s)	140, 251, 277, 295, 592
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	5 cut(s)	115, 238, 321, 576, 579
MfeI	CAATTG	1 cut(s)	61
MlsI	TGGCCA	2 cut(s)	38, 48
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	2 cut(s)	38, 48
MlyI	GAGTC	2 cut(s)	337, 555
Mox20I	TGGCCA	2 cut(s)	38, 48
MroNI	GCCGGC	1 cut(s)	260
MscI	TGGCCA	2 cut(s)	38, 48
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	2 cut(s)	38, 48
MspI	CCGG	7 cut(s)	261, 333, 354, 375, 396, 450, 474
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	3 cut(s)	20, 125, 266
NaeI	GCCGGC	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	247, 265, 478
NmuCI	GTSAC	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	337, 555
PpsI	GAGTC	2 cut(s)	337, 555
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	3 cut(s)	128, 290, 551
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	247, 265, 478
PspPI	GGNCC	2 cut(s)	232, 518
RsaI	GTAC	4 cut(s)	340, 352, 373, 415
RsaNI	GTAC	4 cut(s)	339, 351, 372, 414
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	232, 518
SchI	GAGTC	2 cut(s)	337, 555
ScrFI	CCNGG	1 cut(s)	501
SfaNI	GCATC	3 cut(s)	79, 543, 606
SgrAI	CRCCGGYG	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	3 cut(s)	11, 318, 573
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	140, 184, 548
TasI	AATT	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	6 cut(s)	187, 200, 442, 466, 496, 553
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	2 cut(s)	554, 580
TspRI	CASTG	6 cut(s)	187, 200, 442, 466, 496, 553
XspI	CTAG	3 cut(s)	11, 318, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.