Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Forward (+)

33527299 .. 33531575

Gene Structure 4277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1202000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTGCCCTAGCTTTTGCAGCTCTGCTTCTTTTAGCCATGGCTGGCCAGTCAAGTGCAAATTGGTGTGTTTGCAAAGATGGAGACCCTACGGCCCTGCAGAGGGCACTGGACTATGCCTGTGGAGCTGGGGCAGATTGCAACCCCATAAAACCCAATGGAGTTTGCTACAACCCCAACACTATCAAAGCTCACTGCAGCTATGCTGTCAACAGCTATTTCCAGAAGAAGGGCCAATCCACTGGCACTTGTGACTTTTCTGGCACTGCAACCGCTACCGCCTCTGATCCCAGCTCAAATGGTTGTACTTACCCTGCCAGTGCCAGCTCATCAGGAACTACTCCGACGACACCATCCACGGGAACCGGCACAACCCCAACCACGGGCACTACCCCATCCACCGGCACTCCCCCATCCACCGGCACTACCCCATCCACCGGCACAACCCCATCCACCGGCACAACTCCTACCACCGGGACAACTCCTACCACCGGGACAACCCCCACAACCGGGACAACCCCCACAACCGGCACAACACCCACAACCGGCACAACACCTACAGGCACCACCCCGTACACATCGACTCCTGGAGTACTAGGAGGCATTGGCACCGGCGTAGGGCCATCGGGAGCTGGCATCACCACGGACGACAGCGGTGGGATTAGATCTGTTGACACTGCTAGTTTGTTTTCTTCTCTCCTAACCCTGTTCTTCTCAGGCTTGATGCTTTGGTGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

247

Amino Acids

24.07

Weight (kDa)

4.93

Isoelectric Point (pI)

17.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	22 - 91	5.2e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	563, 608
AciI	CCGC	3 cut(s)	273, 279, 654
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	3 cut(s)	307, 575, 594
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	9 cut(s)	14, 23, 128, 191, 201, 216, 294, 327, 632
AluI	AGCT	9 cut(s)	14, 23, 128, 191, 201, 216, 294, 327, 632
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	4 cut(s)	46, 93, 232, 620
ApeKI	GCWGC	3 cut(s)	5, 20, 198
AspS9I	GGNCC	3 cut(s)	94, 232, 620
AsuC2I	CCSGG	3 cut(s)	475, 493, 511
AsuHPI	GGTGA	1 cut(s)	631
BaeGI	GKGCMC	2 cut(s)	109, 389
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	563, 608
BbvI	GCAGC	2 cut(s)	32, 210
BccI	CCATC	7 cut(s)	74, 361, 403, 421, 439, 457, 631
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	588
BcnI	CCSGG	3 cut(s)	475, 493, 511
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	3 cut(s)	11, 596, 681
BfmI	CTRYAG	3 cut(s)	98, 196, 558
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	3 cut(s)	6, 21, 199
BlsI	GCNGC	3 cut(s)	7, 22, 200
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	4 cut(s)	475, 493, 511, 588
BmgT120I	GGNCC	3 cut(s)	94, 232, 620
BmiI	GGNNCC	3 cut(s)	364, 565, 610
BmrFI	CCNGG	4 cut(s)	475, 493, 511, 588
BmsI	GCATC	2 cut(s)	645, 714
BpmI	CTGGAG	1 cut(s)	609
BpuMI	CCSGG	3 cut(s)	475, 493, 511
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	39, 357, 381, 642
BsaXI	ACNNNNNCTCC	4 cut(s)	391, 421, 568, 598
Bse118I	RCCGGY	8 cut(s)	365, 401, 419, 437, 455, 527, 545, 611
Bse1I	ACTGG	4 cut(s)	49, 114, 247, 318
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	4 cut(s)	39, 357, 381, 642
BseGI	GGATG	5 cut(s)	353, 395, 413, 431, 449
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	4 cut(s)	49, 114, 247, 318
BseSI	GKGCMC	2 cut(s)	109, 389
BseXI	GCAGC	2 cut(s)	32, 210
BseYI	CCCAGC	2 cut(s)	128, 290
BshFI	GGCC	4 cut(s)	48, 95, 234, 622
BshNI	GGYRCC	2 cut(s)	563, 608
BslFI	GGGAC	3 cut(s)	490, 508, 526
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	490, 508, 526
BsnI	GGCC	4 cut(s)	48, 95, 234, 622
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	109, 389
Bsp143I	GATC	2 cut(s)	286, 665
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	273, 279, 654
BspANI	GGCC	4 cut(s)	48, 95, 234, 622
BspCNI	CTCAG	1 cut(s)	728
BspLI	GGNNCC	3 cut(s)	364, 565, 610
BspMAI	CTGCAG	2 cut(s)	102, 200
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	563, 608
BspTNI	GGTCTC	1 cut(s)	78
BsrFI	RCCGGY	8 cut(s)	365, 401, 419, 437, 455, 527, 545, 611
BsrI	ACTGG	4 cut(s)	49, 114, 247, 318
BssAI	RCCGGY	8 cut(s)	365, 401, 419, 437, 455, 527, 545, 611
BssECI	CCNNGG	4 cut(s)	39, 357, 381, 642
BssMI	GATC	2 cut(s)	286, 665
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	46, 325, 634
BstDEI	CTNAG	1 cut(s)	715
BstDSI	CCRYGG	4 cut(s)	39, 357, 381, 642
BstF5I	GGATG	5 cut(s)	353, 395, 413, 431, 449
BstKTI	GATC	2 cut(s)	289, 668
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	286, 665
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 125
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	4 cut(s)	473, 491, 509, 586
BstSFI	CTRYAG	3 cut(s)	98, 196, 558
BstSLI	GKGCMC	2 cut(s)	109, 389
BstV1I	GCAGC	2 cut(s)	32, 210
BstX2I	RGATCY	1 cut(s)	665
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	48, 95, 234, 622
BtgI	CCRYGG	4 cut(s)	39, 357, 381, 642
BtsCI	GGATG	5 cut(s)	353, 395, 413, 431, 449
BtsI	GCAGTG	3 cut(s)	193, 264, 675
BtsIMutI	CAGTG	6 cut(s)	107, 193, 240, 264, 325, 675
Cac8I	GCNNGC	3 cut(s)	46, 325, 634
Cfr10I	RCCGGY	8 cut(s)	365, 401, 419, 437, 455, 527, 545, 611
Cfr13I	GGNCC	3 cut(s)	94, 232, 620
Csp6I	GTAC	3 cut(s)	306, 574, 593
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	3 cut(s)	306, 574, 593
DdeI	CTNAG	1 cut(s)	715
DpnI	GATC	2 cut(s)	288, 667
DpnII	GATC	2 cut(s)	286, 665
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 117, 149, 204
FaqI	GGGAC	3 cut(s)	490, 508, 526
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	6, 21, 199
FokI	GGATG	5 cut(s)	340, 382, 400, 418, 436
Fsp4HI	GCNGC	3 cut(s)	6, 21, 199
FspBI	CTAG	3 cut(s)	11, 596, 681
GluI	GCNGC	3 cut(s)	6, 21, 199
GsaI	CCCAGC	2 cut(s)	132, 294
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	4 cut(s)	48, 95, 234, 622
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	2 cut(s)	211, 673
HindII	GTYRAC	2 cut(s)	211, 673
HinfI	GANTC	1 cut(s)	583
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	3 cut(s)	211, 576, 673
Hpy188I	TCNGA	2 cut(s)	286, 345
Hpy188III	TCNNGA	3 cut(s)	223, 333, 627
Hpy8I	GTNNAC	3 cut(s)	211, 576, 673
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	223
HpyCH4V	TGCA	7 cut(s)	20, 59, 75, 100, 141, 198, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 125
HpyF3I	CTNAG	1 cut(s)	715
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	286, 665
LmnI	GCTCC	2 cut(s)	125, 629
Lsp1109I	GCAGC	2 cut(s)	32, 210
LweI	GCATC	2 cut(s)	645, 714
MaeI	CTAG	3 cut(s)	11, 596, 681
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	288, 667
MboI	GATC	2 cut(s)	286, 665
MboII	GAAGA	3 cut(s)	238, 684, 703
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	2 cut(s)	109, 389
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	3 cut(s)	96, 292, 593
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	654
MspR9I	CCNGG	4 cut(s)	475, 493, 511, 588
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 125
NciI	CCSGG	3 cut(s)	475, 493, 511
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	286, 665
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	364, 565, 610
NmuCI	GTSAC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	7, 22, 200
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	586
PspFI	CCCAGC	2 cut(s)	128, 290
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	3 cut(s)	364, 565, 610
PspPI	GGNCC	3 cut(s)	94, 232, 620
PstI	CTGCAG	2 cut(s)	102, 200
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	3 cut(s)	307, 575, 594
RsaNI	GTAC	3 cut(s)	306, 574, 593
SatI	GCNGC	3 cut(s)	6, 21, 199
Sau3AI	GATC	2 cut(s)	286, 665
Sau96I	GGNCC	3 cut(s)	94, 232, 620
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	4 cut(s)	475, 493, 511, 588
SduI	GDGCHC	2 cut(s)	109, 389
SfaNI	GCATC	2 cut(s)	645, 714
SfcI	CTRYAG	3 cut(s)	98, 196, 558
SgrAI	CRCCGGYG	1 cut(s)	611
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	3 cut(s)	273, 279, 654
SspMI	CTAG	3 cut(s)	11, 596, 681
StyD4I	CCNGG	4 cut(s)	473, 491, 509, 586
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	581
TasI	AATT	1 cut(s)	61
TatI	WGTACW	2 cut(s)	305, 592
TscAI	CASTG	6 cut(s)	114, 200, 247, 271, 325, 682
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	5, 20, 198
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	6 cut(s)	114, 200, 247, 271, 325, 682
XspI	CTAG	3 cut(s)	11, 596, 681
ZrmI	AGTACT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.