Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Forward (+)

29658987 .. 29663187

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1211200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGCCCTTGCTTTTGCAGCTCTGCTTCTCTTAGCCATGGCTGGCCAGTTAAGAGCAAACTGGTGTGTTTGCAAAGATGGAGACCCTGCAGCCCTGCAGAAGGCACTGGACTATGCCTGTGGAGCCGGGGCAGATTGCAACCCCATAAAACCCAATGGAGTTTGCTACAACCCCAACACTATCAAAGCTCACTGCAGCTACGCCGTCAACAGCTTTTTCCAGAAGAAGGGCCAATCCACCGGTACTTGTGACTTTTCTGGCGCTGCAACCCCTACTACCTCCGATCCCAGCTCAAATGGTTGTACTTACCCTGCCAGTGCCAGCTCCTCAGGCACAACTTCGACAACACCATCCACTGGAACAGGCACAACTTCGACAACACCATCCACTGGAACAGGCACAACCCCAACCACCGGAACTACCCCAACCACCGGCACAACCCCTACCTCCGGCACAACCCCTATGACTGGCACAACACCCACAACTGGCACAACACCTACAGGCACCACCCCATACACAGCAACTCCTGGAGTACTAGGAGGCATTGGCACGGGAGTAGGGCCATCGGGAGCTGGCATCAACACGGACGACAGCGGTGTGATTAGACCTATTGACGCTACTAGCTTGTTTTCTTCTCTCCTAACCCTATTCTTCTCAGGCTTGATGCTTTGGTGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

228

Amino Acids

22.45

Weight (kDa)

5.53

Isoelectric Point (pI)

15.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	22 - 91	4.3e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	2 cut(s)	359, 392
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	3 cut(s)	247, 307, 537
AfiI	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 416, 434, 452, 470, 488
AgeI	ACCGGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	8 cut(s)	23, 191, 201, 216, 294, 327, 575, 627
AluI	AGCT	8 cut(s)	23, 191, 201, 216, 294, 327, 575, 627
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	4 cut(s)	46, 232, 563, 678
ApeKI	GCWGC	5 cut(s)	5, 20, 92, 198, 266
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	232, 563, 678
AsuC2I	CCSGG	1 cut(s)	130
AxyI	CCTNAGG	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	506
BbvI	GCAGC	4 cut(s)	32, 104, 210, 253
BccI	CCATC	4 cut(s)	74, 361, 394, 574
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	539, 624
BfmI	CTRYAG	4 cut(s)	90, 98, 196, 501
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
BlsI	GCNGC	5 cut(s)	7, 22, 94, 200, 268
BmcAI	AGTACT	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	130, 531
BmgT120I	GGNCC	3 cut(s)	232, 563, 678
BmiI	GGNNCC	2 cut(s)	127, 508
BmrFI	CCNGG	2 cut(s)	130, 531
BmsI	GCATC	2 cut(s)	588, 657
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	39, 129
BsaWI	WCCGGW	2 cut(s)	242, 416
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 416, 434, 452, 470, 488
Bse118I	RCCGGY	2 cut(s)	242, 434
Bse1I	ACTGG	8 cut(s)	49, 68, 114, 318, 364, 397, 475, 493
Bse21I	CCTNAGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	39, 129
BseGI	GGATG	2 cut(s)	353, 386
BseLI	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 416, 434, 452, 470, 488
BseMII	CTCAG	2 cut(s)	345, 672
BseNI	ACTGG	8 cut(s)	49, 68, 114, 318, 364, 397, 475, 493
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	4 cut(s)	32, 104, 210, 253
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	4 cut(s)	48, 234, 565, 680
BshNI	GGYRCC	1 cut(s)	506
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	129, 243, 417, 435, 453
BslI	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 416, 434, 452, 470, 488
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	48, 234, 565, 680
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	4 cut(s)	48, 234, 565, 680
BspCNI	CTCAG	2 cut(s)	344, 671
BspLI	GGNNCC	2 cut(s)	127, 508
BspMAI	CTGCAG	3 cut(s)	94, 102, 200
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	78
BsrFI	RCCGGY	2 cut(s)	242, 434
BsrI	ACTGG	8 cut(s)	49, 68, 114, 318, 364, 397, 475, 493
BssAI	RCCGGY	2 cut(s)	242, 434
BssECI	CCNNGG	2 cut(s)	39, 129
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	531
BstC8I	GCNNGC	3 cut(s)	46, 325, 577
BstDEI	CTNAG	3 cut(s)	34, 331, 658
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	353, 386
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 125, 333
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	128, 529
BstSFI	CTRYAG	4 cut(s)	90, 98, 196, 501
BstV1I	GCAGC	4 cut(s)	32, 104, 210, 253
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	48, 234, 565, 680
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	353, 386
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	107, 193, 325, 357, 390
Cac8I	GCNNGC	3 cut(s)	46, 325, 577
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	2 cut(s)	242, 434
Cfr13I	GGNCC	3 cut(s)	232, 563, 678
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	246, 306, 536
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	3 cut(s)	246, 306, 536
DdeI	CTNAG	3 cut(s)	34, 331, 658
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	5 cut(s)	41, 117, 149, 467, 517
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
FokI	GGATG	2 cut(s)	340, 373
Fsp4HI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
FspBI	CTAG	2 cut(s)	539, 624
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	48, 234, 565, 680
HapII	CCGG	5 cut(s)	129, 243, 417, 435, 453
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HpaII	CCGG	5 cut(s)	129, 243, 417, 435, 453
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	223, 570
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	97, 223
HpyCH4V	TGCA	7 cut(s)	20, 75, 92, 100, 141, 198, 269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 125, 333
HpyF3I	CTNAG	3 cut(s)	34, 331, 658
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	125, 332, 572
Lsp1109I	GCAGC	4 cut(s)	32, 104, 210, 253
LweI	GCATC	2 cut(s)	588, 657
MaeI	CTAG	2 cut(s)	539, 624
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	238, 627, 646
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
MnlI	CCTC	4 cut(s)	292, 340, 460, 536
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	597
MspI	CCGG	5 cut(s)	129, 243, 417, 435, 453
MspR9I	CCNGG	2 cut(s)	130, 531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 125, 333
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	127, 508
NmuCI	GTSAC	1 cut(s)	251
PflMI	CCANNNNNTGG	2 cut(s)	359, 392
PfoI	TCCNGGA	1 cut(s)	529
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	7, 22, 94, 200, 268
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	127, 508
PspPI	GGNCC	3 cut(s)	232, 563, 678
PstI	CTGCAG	3 cut(s)	94, 102, 200
RsaI	GTAC	3 cut(s)	247, 307, 537
RsaNI	GTAC	3 cut(s)	246, 306, 536
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	3 cut(s)	232, 563, 678
ScaI	AGTACT	1 cut(s)	537
ScrFI	CCNGG	2 cut(s)	130, 531
SfaNI	GCATC	2 cut(s)	588, 657
SfcI	CTRYAG	4 cut(s)	90, 98, 196, 501
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	2 cut(s)	539, 624
StyD4I	CCNGG	2 cut(s)	128, 529
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	2 cut(s)	344, 377
TatI	WGTACW	2 cut(s)	305, 535
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	5 cut(s)	114, 200, 325, 364, 397
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	5 cut(s)	5, 20, 92, 198, 266
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	5 cut(s)	114, 200, 325, 364, 397
Van91I	CCANNNNNTGG	2 cut(s)	359, 392
XagI	CCTNNNNNAGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	539, 624
ZrmI	AGTACT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.