Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Reverse (-)

7890660 .. 7894681

Gene Structure 4022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGCTTTAGCTTTTGCAGCTCTGCTTCTCTTGGCCATGGCTGGCCAGTCAAGTGCCAATTGGTGTGTGTGCAAGACTGGAAGTGATGCAGTATTGCAGAAGACATTGGACTATGCCTGTGGAGCTGGGGCCGACTGTAACCCCATACACTCAAACGGCCCTTGCTACAACCCCAACACTGTTAAAGCTCACTGTGACTATGCTGTTAACAGCTATTTCCAGAAGAAGGGCCAAGCTGCAGGCACCTGTGACTTTGCCGGCACCGCAACCCCTGTTACAACCGATCCCAGCGTTACTGGTTGTGCTTTCCCATCTAGCGCCAGCACTTCCGGCAGTACAACTGGTACTCCAACCACTGGCACTACGACCCCATCCACTGGTACAACACCCACATCTACCGGCACTACACCAACAACCACCGGAACAACCACTGGAACAACCACCGGAACAACCACTGGAACAACCACCGGTGCCACTCCATATACTGCAACTCCTGGAGTATTCGGAGTAGGACCATCTGGAGCTGGCATCACGGATGACAGTGCTGGGATTAGACTCATCGACACTGCTAGTTTGTTCTCTTCTTTCATAACCTTATTCTTTTCAGGCTTGATGCTTTGGTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

211

Amino Acids

20.84

Weight (kDa)

4.9

Isoelectric Point (pI)

13.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	22 - 91	1.4e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	245, 263, 473
AccB7I	CCANNNNNTGG	2 cut(s)	359, 380
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	36, 46
AfaI	GTAC	3 cut(s)	340, 349, 385
AfiI	CCNNNNNNNGG	3 cut(s)	229, 359, 380
AgeI	ACCGGT	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	7 cut(s)	14, 23, 128, 191, 216, 239, 527
AluI	AGCT	7 cut(s)	14, 23, 128, 191, 216, 239, 527
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	5 cut(s)	36, 46, 132, 160, 232
ApeKI	GCWGC	3 cut(s)	5, 20, 239
AsiGI	ACCGGT	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	4 cut(s)	132, 161, 232, 515
AvaII	GGWCC	1 cut(s)	515
BalI	TGGCCA	2 cut(s)	38, 48
BanI	GGYRCC	3 cut(s)	245, 263, 473
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	32, 226
BccI	CCATC	3 cut(s)	322, 382, 526
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	498
BfaI	CTAG	2 cut(s)	318, 573
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	3 cut(s)	6, 21, 240
BlsI	GCNGC	3 cut(s)	7, 22, 241
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	4 cut(s)	132, 161, 232, 515
BmiI	GGNNCC	4 cut(s)	133, 247, 265, 475
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	79, 540, 606
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	519, 543
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	3 cut(s)	422, 446, 470
BsaXI	ACNNNNNCTCC	4 cut(s)	334, 364, 478, 508
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 359, 380
Bse118I	RCCGGY	3 cut(s)	260, 401, 470
Bse1I	ACTGG	8 cut(s)	49, 85, 304, 349, 364, 385, 439, 463
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	374, 544
BseLI	CCNNNNNNNGG	3 cut(s)	229, 359, 380
BseNI	ACTGG	8 cut(s)	49, 85, 304, 349, 364, 385, 439, 463
BseXI	GCAGC	2 cut(s)	32, 226
BseYI	CCCAGC	3 cut(s)	128, 290, 548
BshFI	GGCC	5 cut(s)	38, 48, 134, 162, 234
BshNI	GGYRCC	3 cut(s)	245, 263, 473
BshTI	ACCGGT	1 cut(s)	470
BsiSI	CCGG	6 cut(s)	261, 333, 402, 423, 447, 471
BslI	CCNNNNNNNGG	3 cut(s)	229, 359, 380
BsnI	GGCC	5 cut(s)	38, 48, 134, 162, 234
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	5 cut(s)	38, 48, 134, 162, 234
BspLI	GGNNCC	4 cut(s)	133, 247, 265, 475
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	3 cut(s)	245, 263, 473
BsrFI	RCCGGY	3 cut(s)	260, 401, 470
BsrI	ACTGG	8 cut(s)	49, 85, 304, 349, 364, 385, 439, 463
BssAI	RCCGGY	3 cut(s)	260, 401, 470
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	4 cut(s)	140, 184, 197, 545
Bst6I	CTCTTC	1 cut(s)	589
BstC8I	GCNNGC	5 cut(s)	46, 244, 262, 325, 529
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	374, 544
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 125, 266, 333
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	32, 226
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	5 cut(s)	38, 48, 134, 162, 234
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	374, 544
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	8 cut(s)	180, 193, 357, 378, 432, 456, 550, 567
Cac8I	GCNNGC	5 cut(s)	46, 244, 262, 325, 529
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	3 cut(s)	260, 401, 470
Cfr13I	GGNCC	4 cut(s)	132, 161, 232, 515
Csp6I	GTAC	3 cut(s)	339, 348, 384
CspAI	ACCGGT	1 cut(s)	470
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	3 cut(s)	339, 348, 384
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	2 cut(s)	36, 46
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	7 cut(s)	41, 117, 149, 204, 484, 486, 593
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	6, 21, 240
FokI	GGATG	2 cut(s)	361, 551
Fsp4HI	GCNGC	3 cut(s)	6, 21, 240
FspBI	CTAG	2 cut(s)	318, 573
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	3 cut(s)	6, 21, 240
GsaI	CCCAGC	3 cut(s)	132, 294, 552
GsuI	CTGGAG	2 cut(s)	519, 543
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	5 cut(s)	38, 48, 134, 162, 234
HapII	CCGG	6 cut(s)	261, 333, 402, 423, 447, 471
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	558
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	6 cut(s)	261, 333, 402, 423, 447, 471
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	509
Hpy188III	TCNNGA	2 cut(s)	223, 522
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	4 cut(s)	140, 184, 197, 545
HpyCH4V	TGCA	6 cut(s)	20, 75, 92, 100, 242, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 125, 266, 333
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	125, 524
Lsp1109I	GCAGC	2 cut(s)	32, 226
LweI	GCATC	3 cut(s)	79, 540, 606
MaeI	CTAG	2 cut(s)	318, 573
MaeIII	GTNAC	5 cut(s)	140, 197, 251, 277, 295
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	115, 238, 576
MfeI	CAATTG	1 cut(s)	61
MlsI	TGGCCA	2 cut(s)	38, 48
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	2 cut(s)	38, 48
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	377
Mox20I	TGGCCA	2 cut(s)	38, 48
MroNI	GCCGGC	1 cut(s)	260
MscI	TGGCCA	2 cut(s)	38, 48
MseI	TTAA	2 cut(s)	186, 210
Msp20I	TGGCCA	2 cut(s)	38, 48
MspI	CCGG	6 cut(s)	261, 333, 402, 423, 447, 471
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 125, 266, 333
NaeI	GCCGGC	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	4 cut(s)	133, 247, 265, 475
NmuCI	GTSAC	2 cut(s)	197, 251
PdiI	GCCGGC	1 cut(s)	262
PflMI	CCANNNNNTGG	2 cut(s)	359, 380
PfoI	TCCNGGA	1 cut(s)	496
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	7, 22, 241
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	496
PspFI	CCCAGC	3 cut(s)	128, 290, 548
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	4 cut(s)	133, 247, 265, 475
PspPI	GGNCC	4 cut(s)	132, 161, 232, 515
PstI	CTGCAG	1 cut(s)	244
RsaI	GTAC	3 cut(s)	340, 349, 385
RsaNI	GTAC	3 cut(s)	339, 348, 384
SaqAI	TTAA	2 cut(s)	186, 210
SatI	GCNGC	3 cut(s)	6, 21, 240
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	4 cut(s)	132, 161, 232, 515
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	9 cut(s)	16, 25, 130, 193, 218, 241, 251, 529, 599
SfaNI	GCATC	3 cut(s)	79, 540, 606
SfcI	CTRYAG	1 cut(s)	240
SgrAI	CRCCGGYG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	515
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	2 cut(s)	318, 573
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	140, 184, 197, 545
TaqI	TCGA	1 cut(s)	564
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	186, 210
Tru9I	TTAA	2 cut(s)	186, 210
TscAI	CASTG	8 cut(s)	187, 200, 364, 385, 439, 463, 550, 574
TseFI	GTSAC	2 cut(s)	197, 251
TseI	GCWGC	3 cut(s)	5, 20, 239
Tsp45I	GTSAC	2 cut(s)	197, 251
TspDTI	ATGAA	1 cut(s)	580
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	8 cut(s)	187, 200, 364, 385, 439, 463, 550, 574
Van91I	CCANNNNNTGG	2 cut(s)	359, 380
VpaK11BI	GGWCC	1 cut(s)	515
XspI	CTAG	2 cut(s)	318, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.