Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Forward (+)

16366718 .. 16376724

Gene Structure 10007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G203900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGTTTTAGCTTTTGCAGCACTGCTTCTCTTAGCCATGGCTGGCCAGTCAAGTGCCAATTGGTGTGTTTGCAAAGAGGGATTAGGTGACGCAGTCTGGCAGAAGACACTGGACTATGCCTGTGGAGCTGGGGCTGACTGTAACCCCATCCATTCAAATGGGGGATGCTACAACCCCAACACTGTTAAAGCTCACTGCAACTACGCTGTTAACAGCTATTTTCAGAAGAAGGGCCAAGCTCAAGGCTCTTGTGACTTTGCTGGCACAGCAAACCCTGTTACATCTGATCCCAGCATAACTGGTTGTGTTTACCCCTCTAGCGCCAGCACTGCAGGCACTACTACAACTCCAGTAACAAATACTCCAGGAACACCATCCACTGGCACGGGCACGGGCACTGGCACCGGCACCGGTACGGGCACTGGAACCGGCACAGGCACCGGAACCAACACGGGCACCGGAACCAGCACTGGCACTGGCACTGGTACCACAACCCCAACGACTTCCACCACTCCCACAACTGGTACTACAACACCGACAACCACCACTCCGTACACTGCAACTCCTGGGGTATTAGGAGGGATTGGCACGGGCGTAGGGCCATCAGGAGCTGGCATCAACTCGGACGACAGCGGTGTGATTAGACTTGTTGATGCAAGTTTGTTTTCTTCTATTCTAACCTTATTCGTTTCAGGCTTGATGCTTTGGTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

240

Amino Acids

23.35

Weight (kDa)

4.95

Isoelectric Point (pI)

6.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	488
AccB1I	GGYRCC	5 cut(s)	404, 410, 440, 458, 488
AccB7I	CCANNNNNTGG	1 cut(s)	383
AciI	CCGC	1 cut(s)	636
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	4 cut(s)	418, 490, 529, 557
AfiI	CCNNNNNNNGG	2 cut(s)	383, 524
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	367, 568
AluBI	AGCT	6 cut(s)	14, 131, 194, 219, 242, 614
AluI	AGCT	6 cut(s)	14, 131, 194, 219, 242, 614
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	3 cut(s)	46, 235, 602
ApeKI	GCWGC	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	235, 602
AsuHPI	GGTGA	1 cut(s)	101
BaeGI	GKGCMC	4 cut(s)	395, 401, 425, 461
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	5 cut(s)	404, 410, 440, 458, 488
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	3 cut(s)	158, 385, 613
BciT130I	CCWGG	2 cut(s)	369, 570
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	369, 570
BmgT120I	GGNCC	2 cut(s)	235, 602
BmiI	GGNNCC	8 cut(s)	406, 412, 430, 442, 448, 460, 466, 490
BmrFI	CCNGG	2 cut(s)	369, 570
BmsI	GCATC	4 cut(s)	158, 627, 646, 693
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	2 cut(s)	336, 351
BpuEI	CTTGAG	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	39, 569
BsaWI	WCCGGW	3 cut(s)	413, 443, 461
BsaXI	ACNNNNNCTCC	8 cut(s)	334, 349, 364, 379, 535, 550, 565, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 524
Bse118I	RCCGGY	3 cut(s)	407, 413, 431
BseBI	CCWGG	2 cut(s)	369, 570
BseDI	CCNNGG	2 cut(s)	39, 569
BseGI	GGATG	3 cut(s)	150, 173, 377
BseLI	CCNNNNNNNGG	2 cut(s)	383, 524
BseSI	GKGCMC	4 cut(s)	395, 401, 425, 461
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	2 cut(s)	131, 293
BshFI	GGCC	3 cut(s)	48, 237, 604
BshNI	GGYRCC	5 cut(s)	404, 410, 440, 458, 488
BshTI	ACCGGT	1 cut(s)	413
BsiSI	CCGG	5 cut(s)	408, 414, 432, 444, 462
BslI	CCNNNNNNNGG	2 cut(s)	383, 524
BsnI	GGCC	3 cut(s)	48, 237, 604
Bsp1286I	GDGCHC	4 cut(s)	395, 401, 425, 461
Bsp143I	GATC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	636
BspANI	GGCC	3 cut(s)	48, 237, 604
BspLI	GGNNCC	8 cut(s)	406, 412, 430, 442, 448, 460, 466, 490
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	5 cut(s)	404, 410, 440, 458, 488
BsrFI	RCCGGY	3 cut(s)	407, 413, 431
BssAI	RCCGGY	3 cut(s)	407, 413, 431
BssECI	CCNNGG	2 cut(s)	39, 569
BssMI	GATC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	369, 570
Bst4CI	ACNGT	2 cut(s)	143, 187
BstC8I	GCNNGC	5 cut(s)	46, 265, 328, 337, 616
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	3 cut(s)	150, 173, 377
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 128, 269, 332, 336
BstNI	CCWGG	2 cut(s)	369, 570
BstSCI	CCNGG	2 cut(s)	367, 568
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	4 cut(s)	395, 401, 425, 461
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	48, 237, 604
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	150, 173, 377
BtsI	GCAGTG	4 cut(s)	23, 196, 330, 558
Cac8I	GCNNGC	5 cut(s)	46, 265, 328, 337, 616
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	3 cut(s)	407, 413, 431
Cfr13I	GGNCC	2 cut(s)	235, 602
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	4 cut(s)	417, 489, 528, 556
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	4 cut(s)	417, 489, 528, 556
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	367, 568
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 120, 299
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	3 cut(s)	137, 180, 364
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	21
GsaI	CCCAGC	2 cut(s)	135, 297
GsuI	CTGGAG	2 cut(s)	336, 351
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	48, 237, 604
HapII	CCGG	5 cut(s)	408, 414, 432, 444, 462
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	5 cut(s)	408, 414, 432, 444, 462
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	3 cut(s)	214, 313, 558
Hpy188I	TCNGA	3 cut(s)	228, 289, 628
Hpy188III	TCNNGA	1 cut(s)	609
Hpy8I	GTNNAC	3 cut(s)	214, 313, 558
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	143, 187
HpyCH4V	TGCA	6 cut(s)	20, 75, 201, 335, 563, 659
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 128, 269, 332, 336
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	324
KpnI	GGTACC	1 cut(s)	492
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	128, 611
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	4 cut(s)	158, 627, 646, 693
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	5 cut(s)	89, 143, 254, 280, 355
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	118, 241, 663
MfeI	CAATTG	1 cut(s)	61
MhlI	GDGCHC	4 cut(s)	395, 401, 425, 461
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	1 cut(s)	48
MnlI	CCTC	3 cut(s)	73, 328, 575
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	189, 213
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	5 cut(s)	408, 414, 432, 444, 462
MspR9I	CCNGG	2 cut(s)	369, 570
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	2 cut(s)	369, 570
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 128, 269, 332, 336
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	8 cut(s)	406, 412, 430, 442, 448, 460, 466, 490
NmuCI	GTSAC	2 cut(s)	89, 254
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	383
PfoI	TCCNGGA	1 cut(s)	367
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	367, 568
PspFI	CCCAGC	2 cut(s)	131, 293
PspGI	CCWGG	2 cut(s)	367, 568
PspN4I	GGNNCC	8 cut(s)	406, 412, 430, 442, 448, 460, 466, 490
PspPI	GGNCC	2 cut(s)	235, 602
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	614
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	4 cut(s)	418, 490, 529, 557
RsaNI	GTAC	4 cut(s)	417, 489, 528, 556
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	189, 213
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	2 cut(s)	235, 602
ScrFI	CCNGG	2 cut(s)	369, 570
SduI	GDGCHC	4 cut(s)	395, 401, 425, 461
SetI	ASST	8 cut(s)	16, 91, 133, 196, 221, 244, 616, 686
SfaNI	GCATC	4 cut(s)	158, 627, 646, 693
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	636
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	367, 568
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	143, 187
TasI	AATT	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	189, 213
Tru9I	TTAA	2 cut(s)	189, 213
TseFI	GTSAC	2 cut(s)	89, 254
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	2 cut(s)	89, 254
TspGWI	ACGGA	1 cut(s)	543
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	383
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.