Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Reverse (-)

24587173 .. 24589580

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTGCTCTGGTGCTTTCACTTCTCCTTCTATCCTTGGCTGGACATTCTAGTGCCTCATGGTGTGTGTGTAAGACAGGGCTGAGTGATACAGTGCTACAGGCAACCCTAGACTATGCTTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAACAATCTTGCTTCAACCCTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAGGGTCAATCTCCTGGCTCTTGTAATTTCGATGGAACTGCCACTCCCACTAACTCCGATCCCAGTTATACAGGTTGTGCCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCAGCACAACTGTGACACCTGGCACAACCAATCCAAAAGGCAGCCCAACGACCACCACACTTCCTGGTAGTGGTACCAACAGTCCTTATTCAGGGAACCCAACCAATGGAGTTTTTGGGGGAAATAGCACAGGAGGCACCACTGGGACAGGGATTAACCCGGATTACACGACAGACAGCAGCGCGTTTGCTCTCAAGAACTCAAGCAAATTGTTCATCTGCCTTCTCTTGATCGCTTCGAGTGGATTCTGCTCTTTCCTGATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

201

Amino Acids

20.36

Weight (kDa)

7.47

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	20 - 91	5.6e-19	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	410, 473
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	1 cut(s)	521
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	4 cut(s)	229, 407, 428, 443
AgsI	TTSAA	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	241, 355, 400
AleI	CACNNNNGTG	1 cut(s)	347
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	4 cut(s)	5, 339, 378, 516
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	497
BanI	GGYRCC	2 cut(s)	410, 473
BbvI	GCAGC	3 cut(s)	351, 390, 528
BccI	CCATC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	3 cut(s)	243, 357, 402
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	195
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	4 cut(s)	51, 110, 318, 333
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	5 cut(s)	6, 337, 340, 379, 517
BlsI	GCNGC	5 cut(s)	7, 338, 341, 380, 518
Bme1390I	CCNGG	4 cut(s)	243, 357, 402, 497
BmiI	GGNNCC	3 cut(s)	412, 434, 475
BmrFI	CCNGG	4 cut(s)	243, 357, 402, 497
BmrI	ACTGGG	2 cut(s)	285, 489
BmsI	GCATC	1 cut(s)	588
BmuI	ACTGGG	2 cut(s)	285, 489
BpuEI	CTTGAG	2 cut(s)	515, 523
BpuMI	CCSGG	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 407, 428, 443
Bse1I	ACTGG	3 cut(s)	291, 324, 484
Bse3DI	GCAATG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	243, 357, 402
BseDI	CCNNGG	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	4 cut(s)	229, 407, 428, 443
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	3 cut(s)	291, 324, 484
BseXI	GCAGC	3 cut(s)	351, 390, 528
Bsh1236I	CGCG	1 cut(s)	521
BshNI	GGYRCC	2 cut(s)	410, 473
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	229, 407, 428, 443
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	496
Bso31I	GGTCTC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	286, 567
BspACI	CCGC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	3 cut(s)	412, 434, 475
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	410, 473
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	291, 324, 484
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	286, 567
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	3 cut(s)	243, 357, 402
Bst4CI	ACNGT	3 cut(s)	94, 349, 419
BstDEI	CTNAG	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	2 cut(s)	289, 570
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	286, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 471
BstNI	CCWGG	3 cut(s)	243, 357, 402
BstSCI	CCNGG	4 cut(s)	241, 355, 400, 495
BstSFI	CTRYAG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	351, 390, 528
BtsIMutI	CAGTG	3 cut(s)	99, 331, 477
CfoI	GCGC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	7 cut(s)	5, 41, 82, 216, 246, 330, 381
CviKI_1	RGCY	7 cut(s)	5, 41, 82, 216, 246, 330, 381
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	288, 569
DpnII	GATC	2 cut(s)	286, 567
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoRII	CCWGG	3 cut(s)	241, 355, 400
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	63
FaiI	YATR	4 cut(s)	61, 117, 204, 297
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	6, 337, 340, 379, 517
Fsp4HI	GCNGC	5 cut(s)	6, 337, 340, 379, 517
FspBI	CTAG	4 cut(s)	51, 110, 318, 333
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	5 cut(s)	6, 337, 340, 379, 517
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	1 cut(s)	582
HpaII	CCGG	1 cut(s)	497
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	532, 565, 595
HpyAV	CCTTC	3 cut(s)	38, 223, 569
HpyCH4III	ACNGT	3 cut(s)	94, 349, 419
HpyCH4V	TGCA	2 cut(s)	198, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 471
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	519
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	286, 567
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	3 cut(s)	351, 390, 528
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	4 cut(s)	51, 110, 318, 333
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	288, 569
MboI	GATC	2 cut(s)	286, 567
MboII	GAAGA	1 cut(s)	211
MluCI	AATT	2 cut(s)	253, 545
MnlI	CCTC	2 cut(s)	67, 464
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	2 cut(s)	51, 347
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	4 cut(s)	243, 357, 402, 497
MvaI	CCWGG	3 cut(s)	243, 357, 402
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	336, 471
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	2 cut(s)	286, 567
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	3 cut(s)	412, 434, 475
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	7, 338, 341, 380, 518
Psp6I	CCWGG	3 cut(s)	241, 355, 400
PspGI	CCWGG	3 cut(s)	241, 355, 400
PspN4I	GGNNCC	3 cut(s)	412, 434, 475
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	2 cut(s)	51, 347
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	5 cut(s)	6, 337, 340, 379, 517
Sau3AI	GATC	2 cut(s)	286, 567
ScrFI	CCNGG	4 cut(s)	243, 357, 402, 497
SetI	ASST	4 cut(s)	191, 218, 304, 358
SfaNI	GCATC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	51, 347
SmlI	CTYRAG	2 cut(s)	530, 538
SmoI	CTYRAG	2 cut(s)	530, 538
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	2 cut(s)	253, 545
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	4 cut(s)	51, 110, 318, 333
StyD4I	CCNGG	4 cut(s)	241, 355, 400, 495
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	94, 349, 419
TaqI	TCGA	2 cut(s)	258, 575
TasI	AATT	2 cut(s)	253, 545
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	582
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	3 cut(s)	99, 331, 484
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	4 cut(s)	5, 339, 378, 516
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	541
TspRI	CASTG	3 cut(s)	99, 331, 484
Van91I	CCANNNNNTGG	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	426
XspI	CTAG	4 cut(s)	51, 110, 318, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.