Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Forward (+)

3803481 .. 3807607

Gene Structure 4127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG054800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTGCAAGTTCTACCTTTTTATTGTGAAAGTTTATTCCCTTTTTAATTTTAATTTCCTTTGTGGGAGTACTGCTATTTTAGGTGCCAATTGGTGTGTGTGCAAGAGTGGGAGTGATGCAGTATTGCAGAAGACATTGGACTATGCCTGTGGAGCTGGGGCTGACTGTAACCCCATACATCCAAATGGGGCTTGCTACAACCCTAACACTGTTAAAGCTCACTGCGACTATGCTGTCAACAGCTATTTCCAGAAGAAGGGCCAAGCTCAAGGCACCTGTGACTTTGCCGGCACCGCAACCCCTGTTACATCCGATCCCAGCGTTACTGGTTGTGTTTTCCCATCTAGCGCCAGTTCTTCCGGCAGTACGACTCCAAGTACCGGCACAACCACCCCAAGTACCGGCACCACCACCCCAACCACCGGCACCACCACCCCAACCACCGGCACAACACCCACAAGTACCAACACAACACCAACAACCACCGGAACAACCACAGGAACAACCACTGGGACAACCACCGGTGCCACTCCATACACTGCAACTCCCGGAGTATTTGGAGTAGGGCCATCTGGAGCTGGCATCACGGATGACAGTGCTGGGATTAGACTCATTGACACTACTAGTTTGTTCTCTTCTTCCGTAACCTTATTCTTTTCAAGCTTGATGCTTTGGTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

227

Amino Acids

23.09

Weight (kDa)

5.99

Isoelectric Point (pI)

14.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	31 - 100	6.5e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccB1I	GGYRCC	6 cut(s)	83, 272, 290, 404, 425, 524
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	308
AfaI	GTAC	5 cut(s)	70, 367, 379, 400, 463
AfiI	CCNNNNNNNGG	5 cut(s)	256, 380, 401, 422, 443
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	660
AhlI	ACTAGT	1 cut(s)	623
AluBI	AGCT	6 cut(s)	155, 218, 243, 266, 578, 663
AluI	AGCT	6 cut(s)	155, 218, 243, 266, 578, 663
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	259, 566
AsiGI	ACCGGT	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	259, 566
AsuC2I	CCSGG	1 cut(s)	549
BanI	GGYRCC	6 cut(s)	83, 272, 290, 404, 425, 524
BbsI	GAAGAC	1 cut(s)	137
BccI	CCATC	2 cut(s)	349, 577
BcnI	CCSGG	1 cut(s)	549
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	2 cut(s)	345, 624
BfoI	RGCGCY	1 cut(s)	351
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	549
BmgT120I	GGNCC	2 cut(s)	259, 566
BmiI	GGNNCC	6 cut(s)	85, 274, 292, 406, 427, 526
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	106, 591, 657
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	549
BsaWI	WCCGGW	2 cut(s)	485, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 380, 401, 422, 443
Bse118I	RCCGGY	6 cut(s)	287, 380, 401, 422, 443, 521
Bse1I	ACTGG	3 cut(s)	331, 351, 514
BseGI	GGATG	3 cut(s)	178, 308, 595
BseLI	CCNNNNNNNGG	5 cut(s)	256, 380, 401, 422, 443
BseNI	ACTGG	3 cut(s)	331, 351, 514
BseYI	CCCAGC	3 cut(s)	155, 317, 599
BshFI	GGCC	2 cut(s)	261, 568
BshNI	GGYRCC	6 cut(s)	83, 272, 290, 404, 425, 524
BshTI	ACCGGT	1 cut(s)	521
BsiSI	CCGG	9 cut(s)	288, 360, 381, 402, 423, 444, 486, 522, 549
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	5 cut(s)	256, 380, 401, 422, 443
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	261, 568
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	2 cut(s)	261, 568
BspLI	GGNNCC	6 cut(s)	85, 274, 292, 406, 427, 526
BspPI	GGATC	1 cut(s)	308
BspT107I	GGYRCC	6 cut(s)	83, 272, 290, 404, 425, 524
BsrFI	RCCGGY	6 cut(s)	287, 380, 401, 422, 443, 521
BsrI	ACTGG	3 cut(s)	331, 351, 514
BssAI	RCCGGY	6 cut(s)	287, 380, 401, 422, 443, 521
BssMI	GATC	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	167, 211, 596
Bst6I	CTCTTC	1 cut(s)	640
BstC8I	GCNNGC	3 cut(s)	193, 289, 580
BstF5I	GGATG	3 cut(s)	178, 308, 595
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 293
BstSCI	CCNGG	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	261, 568
BtsCI	GGATG	3 cut(s)	178, 308, 595
BtsI	GCAGTG	2 cut(s)	220, 537
BtsIMutI	CAGTG	5 cut(s)	207, 220, 507, 537, 601
Cac8I	GCNNGC	3 cut(s)	193, 289, 580
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	6 cut(s)	287, 380, 401, 422, 443, 521
Cfr13I	GGNCC	2 cut(s)	259, 566
Csp6I	GTAC	5 cut(s)	69, 366, 378, 399, 462
CspAI	ACCGGT	1 cut(s)	521
CviQI	GTAC	5 cut(s)	69, 366, 378, 399, 462
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
FaiI	YATR	4 cut(s)	144, 176, 231, 535
FaqI	GGGAC	1 cut(s)	526
FokI	GGATG	3 cut(s)	165, 295, 602
FspBI	CTAG	2 cut(s)	345, 624
GlaI	GCGC	1 cut(s)	349
GsaI	CCCAGC	3 cut(s)	159, 321, 603
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	261, 568
HapII	CCGG	9 cut(s)	288, 360, 381, 402, 423, 444, 486, 522, 549
HhaI	GCGC	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	2 cut(s)	370, 609
HpaII	CCGG	9 cut(s)	288, 360, 381, 402, 423, 444, 486, 522, 549
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	250, 573
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	167, 211, 596
HpyCH4V	TGCA	5 cut(s)	6, 102, 119, 127, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 293
HspAI	GCGC	1 cut(s)	348
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	152, 575
LweI	GCATC	3 cut(s)	106, 591, 657
MaeI	CTAG	2 cut(s)	345, 624
MaeIII	GTNAC	5 cut(s)	167, 278, 304, 322, 643
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	5 cut(s)	142, 265, 348, 627, 630
MfeI	CAATTG	1 cut(s)	88
MluCI	AATT	3 cut(s)	46, 52, 88
MlyI	GAGTC	2 cut(s)	364, 603
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	3 cut(s)	45, 51, 213
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	9 cut(s)	288, 360, 381, 402, 423, 444, 486, 522, 549
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	152, 293
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	313
NgoMIV	GCCGGC	1 cut(s)	287
NlaIV	GGNNCC	6 cut(s)	85, 274, 292, 406, 427, 526
NmuCI	GTSAC	1 cut(s)	278
PdiI	GCCGGC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	547
PinAI	ACCGGT	1 cut(s)	521
PleI	GAGTC	2 cut(s)	364, 603
PpsI	GAGTC	2 cut(s)	364, 603
PspFI	CCCAGC	3 cut(s)	155, 317, 599
PspN4I	GGNNCC	6 cut(s)	85, 274, 292, 406, 427, 526
PspPI	GGNCC	2 cut(s)	259, 566
RsaI	GTAC	5 cut(s)	70, 367, 379, 400, 463
RsaNI	GTAC	5 cut(s)	69, 366, 378, 399, 462
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	45, 51, 213
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	259, 566
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	2 cut(s)	364, 603
ScrFI	CCNGG	1 cut(s)	549
SfaNI	GCATC	3 cut(s)	106, 591, 657
SgrAI	CRCCGGYG	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SpeI	ACTAGT	1 cut(s)	623
Sse9I	AATT	3 cut(s)	46, 52, 88
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	2 cut(s)	345, 624
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	167, 211, 596
TasI	AATT	3 cut(s)	46, 52, 88
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	45, 51, 213
Tru9I	TTAA	3 cut(s)	45, 51, 213
TscAI	CASTG	5 cut(s)	214, 227, 514, 544, 601
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspGWI	ACGGA	2 cut(s)	602, 631
TspRI	CASTG	5 cut(s)	214, 227, 514, 544, 601
XspI	CTAG	2 cut(s)	345, 624
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.