Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Forward (+)

29642083 .. 29646571

Gene Structure 4489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCCCTTGCTATTGCAGCTCTGCTTCTCTTAGCCATGGCTGGCCAGTCAAGAGCAAACTGGTGTGTTTGCAAAGATGGAGACCCTGCAGCCCTGCAGAAGGCATTGGACTATGCCTGTGGAGCCGGGGCAGATTGCAACCCCATAAAACCCAATGGAGTTTGCTACAACCCCAACACTATCAAAGCTCACTGCAGCTACGCCGTCAACAGCTACTTCCAGAAGAAGGGCCAATCCACCGGTACTTGTGACTTTTCTGGCGCTGCAACCCCTACTACCTCCGATCCAAGCTCAAATGGTTGTACCTACCCTGCCAGTGCCAGCTCCTCAGGCACAACTCCGACAACACCATCTACTGGAACCGGCACAACCCCAAGCACCGGAACTACCCCTACCACCGGCACAACCCCTACCACTGGCACAACCTCTACCACTGGCACTACCCCTACCACCGGCACAACACCTACAGGCGCCACCCCATACACGGCAACTCCTGGAGTACTAGGAGGCACTGGCATGGGAATAGGGCCATCGGGAGCTGGCATCAACACGGACGACAGCGGTGTGATTAGACCTGTTGACACTACTAGCTTGTTTTCTTCTCTCCTAACCCTATTCTTCTCAGGCTTGATGCTTTGGTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

217

Amino Acids

21.45

Weight (kDa)

5.06

Isoelectric Point (pI)

19.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	22 - 91	6.9e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	359
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	3 cut(s)	247, 307, 504
AfiI	CCNNNNNNNGG	8 cut(s)	103, 229, 359, 383, 401, 419, 455, 487
AgeI	ACCGGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	8 cut(s)	23, 191, 201, 216, 294, 327, 542, 594
AluI	AGCT	8 cut(s)	23, 191, 201, 216, 294, 327, 542, 594
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	3 cut(s)	46, 232, 530
ApeKI	GCWGC	5 cut(s)	5, 20, 92, 198, 266
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	266, 476
AspS9I	GGNCC	2 cut(s)	232, 530
AsuC2I	CCSGG	1 cut(s)	130
AxyI	CCTNAGG	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	473
BbvI	GCAGC	4 cut(s)	32, 104, 210, 253
BccI	CCATC	3 cut(s)	74, 361, 541
BceAI	ACGGC	2 cut(s)	191, 504
BciT130I	CCWGG	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	506, 591
BfmI	CTRYAG	4 cut(s)	90, 98, 196, 468
BfoI	RGCGCY	2 cut(s)	267, 477
BisI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
BlsI	GCNGC	5 cut(s)	7, 22, 94, 200, 268
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	130, 498
BmgT120I	GGNCC	2 cut(s)	232, 530
BmiI	GGNNCC	3 cut(s)	127, 364, 475
BmrFI	CCNGG	2 cut(s)	130, 498
BmsI	GCATC	2 cut(s)	555, 624
BpmI	CTGGAG	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	39, 129
BsaWI	WCCGGW	2 cut(s)	242, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	8 cut(s)	103, 229, 359, 383, 401, 419, 455, 487
Bse118I	RCCGGY	4 cut(s)	242, 365, 401, 455
Bse1I	ACTGG	7 cut(s)	49, 68, 318, 364, 424, 442, 520
Bse21I	CCTNAGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	39, 129
BseLI	CCNNNNNNNGG	8 cut(s)	103, 229, 359, 383, 401, 419, 455, 487
BseMII	CTCAG	2 cut(s)	345, 639
BseNI	ACTGG	7 cut(s)	49, 68, 318, 364, 424, 442, 520
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	4 cut(s)	32, 104, 210, 253
BshFI	GGCC	3 cut(s)	48, 234, 532
BshNI	GGYRCC	1 cut(s)	473
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	6 cut(s)	129, 243, 366, 384, 402, 456
BslI	CCNNNNNNNGG	8 cut(s)	103, 229, 359, 383, 401, 419, 455, 487
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	48, 234, 532
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	3 cut(s)	48, 234, 532
BspCNI	CTCAG	2 cut(s)	344, 638
BspLI	GGNNCC	3 cut(s)	127, 364, 475
BspMAI	CTGCAG	3 cut(s)	94, 102, 200
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	78
BsrFI	RCCGGY	4 cut(s)	242, 365, 401, 455
BsrI	ACTGG	7 cut(s)	49, 68, 318, 364, 424, 442, 520
BssAI	RCCGGY	4 cut(s)	242, 365, 401, 455
BssECI	CCNNGG	2 cut(s)	39, 129
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	46, 325, 544
BstDEI	CTNAG	3 cut(s)	34, 331, 625
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstH2I	RGCGCY	2 cut(s)	267, 477
BstHHI	GCGC	2 cut(s)	266, 476
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 125, 333
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	2 cut(s)	128, 496
BstSFI	CTRYAG	4 cut(s)	90, 98, 196, 468
BstV1I	GCAGC	4 cut(s)	32, 104, 210, 253
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	48, 234, 532
BtgI	CCRYGG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	193, 325, 417, 435, 513
Cac8I	GCNNGC	3 cut(s)	46, 325, 544
CfoI	GCGC	2 cut(s)	266, 476
Cfr10I	RCCGGY	4 cut(s)	242, 365, 401, 455
Cfr13I	GGNCC	2 cut(s)	232, 530
Csp6I	GTAC	3 cut(s)	246, 306, 503
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	2 cut(s)	40, 520
CviQI	GTAC	3 cut(s)	246, 306, 503
DdeI	CTNAG	3 cut(s)	34, 331, 625
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	43, 523
FaiI	YATR	5 cut(s)	41, 117, 149, 484, 521
FatI	CATG	2 cut(s)	39, 519
Fnu4HI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
Fsp4HI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
FspBI	CTAG	2 cut(s)	506, 591
GlaI	GCGC	2 cut(s)	265, 475
GluI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	2 cut(s)	267, 477
HaeIII	GGCC	3 cut(s)	48, 234, 532
HapII	CCGG	6 cut(s)	129, 243, 366, 384, 402, 456
HhaI	GCGC	2 cut(s)	266, 476
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	43, 523
Hin6I	GCGC	2 cut(s)	264, 474
HinP1I	GCGC	2 cut(s)	264, 474
HincII	GTYRAC	2 cut(s)	211, 583
HindII	GTYRAC	2 cut(s)	211, 583
HpaII	CCGG	6 cut(s)	129, 243, 366, 384, 402, 456
Hpy166II	GTNNAC	2 cut(s)	211, 583
Hpy188I	TCNGA	2 cut(s)	286, 345
Hpy188III	TCNNGA	3 cut(s)	54, 223, 537
Hpy8I	GTNNAC	2 cut(s)	211, 583
HpyAV	CCTTC	2 cut(s)	97, 223
HpyCH4V	TGCA	7 cut(s)	20, 75, 92, 100, 141, 198, 269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 125, 333
HpyF3I	CTNAG	3 cut(s)	34, 331, 625
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	43, 523
HspAI	GCGC	2 cut(s)	264, 474
KasI	GGCGCC	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	125, 332, 539
Lsp1109I	GCAGC	4 cut(s)	32, 104, 210, 253
LweI	GCATC	2 cut(s)	555, 624
MaeI	CTAG	2 cut(s)	506, 591
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	238, 594, 613
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	4 cut(s)	292, 340, 439, 503
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	6 cut(s)	129, 243, 366, 384, 402, 456
MspR9I	CCNGG	2 cut(s)	130, 498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 125, 333
NarI	GGCGCC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	43, 523
NlaIV	GGNNCC	3 cut(s)	127, 364, 475
NmuCI	GTSAC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	496
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	7, 22, 94, 200, 268
PluTI	GGCGCC	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	127, 364, 475
PspPI	GGNCC	2 cut(s)	232, 530
PsrI	GAACNNNNNNTAC	2 cut(s)	379, 411
PstI	CTGCAG	3 cut(s)	94, 102, 200
RsaI	GTAC	3 cut(s)	247, 307, 504
RsaNI	GTAC	3 cut(s)	246, 306, 503
RseI	CAYNNNNRTG	1 cut(s)	518
SatI	GCNGC	5 cut(s)	6, 21, 93, 199, 267
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	232, 530
ScaI	AGTACT	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	130, 498
SfaNI	GCATC	2 cut(s)	555, 624
SfcI	CTRYAG	4 cut(s)	90, 98, 196, 468
SfoI	GGCGCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	518
SsiI	CCGC	1 cut(s)	564
SspDI	GGCGCC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	506, 591
StyD4I	CCNGG	2 cut(s)	128, 496
StyI	CCWWGG	1 cut(s)	39
TatI	WGTACW	1 cut(s)	502
TscAI	CASTG	5 cut(s)	200, 325, 424, 442, 520
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	5 cut(s)	5, 20, 92, 198, 266
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	5 cut(s)	200, 325, 424, 442, 520
Van91I	CCANNNNNTGG	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	506, 591
ZrmI	AGTACT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.