Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Reverse (-)

63346760 .. 63351729

Gene Structure 4970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTGATTAGAGGGAGAAATGCCACGGTGGGTGGCCCCACATCAAGTCCAAATCATGCCAGCAATCTCACCACCATTATTGTTAGCTTCCTCAAACGCTTGCCACAAAGCTCTCTGTTCAGCTCAGTCATGGGTGTTCTAGCTTTTGCAGCTTTGCTTTTCTTGGCCATGGCTGGCCAGTCAAGTGCCAATTGGTGTGTGTGCAAGAGTGGGAGTGATGCAGTATTGCAGAAGACATTGGACTATGCCTGTGGAGCTGGGGCTGACTGTAACCCCATACATCCAAATGGGGCTTGCTATAACCCTAACACTGTTAAAGCTCACTGCGACTATGCTGTCAACAGCTATTTCCCAGAAGAAGGGCCAAGCTCAAGGCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

127

Amino Acids

13.34

Weight (kDa)

8.26

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	65 - 124	1.4e-15	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	375
AcoI	YGGCCR	2 cut(s)	165, 175
AfiI	CCNNNNNNNGG	1 cut(s)	359
AluBI	AGCT	9 cut(s)	87, 111, 123, 143, 152, 257, 320, 345, 369
AluI	AGCT	9 cut(s)	87, 111, 123, 143, 152, 257, 320, 345, 369
AoxI	GGCC	4 cut(s)	34, 165, 175, 362
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	35, 362
AsuHPI	GGTGA	2 cut(s)	16, 61
BalI	TGGCCA	2 cut(s)	167, 177
BanI	GGYRCC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	35, 362
BmiI	GGNNCC	2 cut(s)	37, 377
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	24, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	24, 168
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	4 cut(s)	36, 167, 177, 364
BshNI	GGYRCC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	359
BsnI	GGCC	4 cut(s)	36, 167, 177, 364
Bsp19I	CCATGG	1 cut(s)	168
BspANI	GGCC	4 cut(s)	36, 167, 177, 364
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	37, 377
BspT107I	GGYRCC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	24, 168
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	28, 269, 313
BstC8I	GCNNGC	4 cut(s)	61, 101, 175, 295
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	2 cut(s)	24, 168
BstF5I	GGATG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 254
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	36, 167, 177, 364
BtgI	CCRYGG	2 cut(s)	24, 168
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	309, 322
Cac8I	GCNNGC	4 cut(s)	61, 101, 175, 295
Cfr13I	GGNCC	2 cut(s)	35, 362
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	3 cut(s)	56, 130, 169
DdeI	CTNAG	1 cut(s)	124
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	165, 175
Eco130I	CCWWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	59, 133, 172
FaiI	YATR	7 cut(s)	57, 131, 170, 246, 278, 300, 333
FatI	CATG	3 cut(s)	55, 129, 168
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	150
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	36, 167, 177, 364
Hin1II	CATG	3 cut(s)	59, 133, 172
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HphI	GGTGA	2 cut(s)	16, 61
Hpy166II	GTNNAC	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	3 cut(s)	28, 269, 313
HpyCH4V	TGCA	4 cut(s)	149, 204, 221, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 254
HpyF3I	CTNAG	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	59, 133, 172
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	6 cut(s)	73, 159, 191, 243, 262, 366
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	269
MboII	GAAGA	2 cut(s)	244, 368
MfeI	CAATTG	1 cut(s)	190
MlsI	TGGCCA	2 cut(s)	167, 177
MluCI	AATT	1 cut(s)	190
MluNI	TGGCCA	2 cut(s)	167, 177
MnlI	CCTC	2 cut(s)	5, 101
Mox20I	TGGCCA	2 cut(s)	167, 177
MscI	TGGCCA	2 cut(s)	167, 177
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	2 cut(s)	167, 177
MunI	CAATTG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	149, 254
NcoI	CCATGG	1 cut(s)	168
NlaIII	CATG	3 cut(s)	59, 133, 172
NlaIV	GGNNCC	2 cut(s)	37, 377
PkrI	GCNGC	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	37, 377
PspPI	GGNCC	2 cut(s)	35, 362
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	35, 362
SfaNI	GCATC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	28, 269, 313
TasI	AATT	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	316, 329
TseI	GCWGC	1 cut(s)	149
TspRI	CASTG	2 cut(s)	316, 329
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.