AT1G19200

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010874
Physical Location & Seq
Reverse (-)
6625012 .. 6626217
1206 bp
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UTR
Exon/CDS
Intron
AT1G19200.1

Sequence Viewer

Length: 648 bp
ATGGTGGTTCCAGGTAAAAACTCCACTATTTCGCCGGATTATTTCACGGCTAGTCAAACAAGTCCTTTAGATATGATGAAATTCCCGTCGCCTGGAAGTTCGAAGAGGTACGATAATGGCGGTGGAATTGGTTTAGGTATCGTCGCTGCGCTTGAGAAATCCAGCATCGGGATCAATCCGGTTTGCCATACCGGTGCCGGTTCCAAAGGATTTGACCTGGCTCGATATTCCAAGAGATTCCAATTCGCGGCGGGGATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGACTCGTGATGGCCTGACCAAAGTCTATTACAAGGAAGAAGAGTTTGAATTTGGTCATAATCTATTGAACGGTGATCAGAGATGGAGAAAACCGATAGAAATCGCCGAGGAGTCACCGGCGAAGGAGAGGCGGGTATTGAGAGATTGTCCAGATTTTCTAACTTCTTGTTGCTTGTGTAAGAAGAAACTTCAAGGCAAAGACATTTACATGTACAAAGGAGATGAAGGATTTTGTAGTAAAGAGTGTAGATCGTTGAAGATAATGGAGGATAGTTTAAAAGAGCAACATAAATTGACAAGTGTTGAGGTTCTAACCGGAGAAGAGATTGCCTCCCCCGGAATATTCCTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

215

Amino Acids

23.87

Weight (kDa)

6.0

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 144 - 189 5.2e-19 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 248
AciI CCGC 4 cut(s) 120, 248, 251, 424
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 80, 341
AfaI GTAC 2 cut(s) 110, 506
AfiI CCNNNNNNNGG 3 cut(s) 92, 168, 247
AflIII ACRYGT 1 cut(s) 501
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 4 cut(s) 341, 361, 485, 550
AjnI CCWGG 3 cut(s) 10, 91, 216
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 80, 341
AsiGI ACCGGT 1 cut(s) 191
AspLEI GCGC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 377, 399
AsuII TTCGAA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 194
BauI CACGAG 1 cut(s) 297
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 296, 369
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 3 cut(s) 12, 93, 218
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 630
BfaI CTAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 147, 249
BlsI GCNGC 2 cut(s) 148, 250
Bme1390I CCNGG 4 cut(s) 12, 93, 218, 630
BmiI GGNNCC 3 cut(s) 9, 196, 202
BmrFI CCNGG 4 cut(s) 12, 93, 218, 630
BmsI GCATC 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 608, 640
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 399, 628
BsaWI WCCGGW 3 cut(s) 178, 191, 608
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 168, 247
Bse118I RCCGGY 3 cut(s) 191, 197, 409
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 3 cut(s) 12, 93, 218
BseDI CCNNGG 2 cut(s) 399, 628
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 3 cut(s) 92, 168, 247
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 191
BsiSI CCGG 7 cut(s) 35, 179, 192, 198, 410, 609, 630
BslI CCNNNNNNNGG 3 cut(s) 92, 168, 247
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 101
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 4 cut(s) 171, 259, 367, 542
BspACI CCGC 4 cut(s) 120, 248, 251, 424
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 9, 196, 202
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 3 cut(s) 191, 197, 409
BsrGI TGTACA 1 cut(s) 504
BssAI RCCGGY 3 cut(s) 191, 197, 409
BssECI CCNNGG 2 cut(s) 399, 628
BssMI GATC 4 cut(s) 171, 259, 367, 542
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 3 cut(s) 12, 93, 218
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 3 cut(s) 98, 327, 609
BstAUI TGTACA 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 174, 262, 370, 545
BstMBI GATC 4 cut(s) 171, 259, 367, 542
BstNI CCWGG 3 cut(s) 12, 93, 218
BstNSI RCATGY 1 cut(s) 505
BstPAI GACNNNNGTC 1 cut(s) 314
BstSCI CCNGG 4 cut(s) 10, 91, 216, 628
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 306
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 3 cut(s) 191, 197, 409
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 109, 505
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 1 cut(s) 502
CviJI RGCY 3 cut(s) 50, 221, 306
CviKI_1 RGCY 3 cut(s) 50, 221, 306
CviQI GTAC 2 cut(s) 109, 505
DdeI CTNAG 1 cut(s) 273
DpnI GATC 4 cut(s) 173, 261, 369, 544
DpnII GATC 4 cut(s) 171, 259, 367, 542
DraI TTTAAA 1 cut(s) 570
Eam1104I CTCTTC 3 cut(s) 98, 327, 609
EarI CTCTTC 3 cut(s) 98, 327, 609
EcoRII CCWGG 3 cut(s) 10, 91, 216
FaeI CATG 1 cut(s) 505
FaiI YATR 7 cut(s) 74, 189, 351, 503, 582, 644, 646
FatI CATG 1 cut(s) 501
FauI CCCGC 2 cut(s) 244, 417
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 147, 249
Fsp4HI GCNGC 2 cut(s) 147, 249
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 147, 249
HaeIII GGCC 1 cut(s) 306
HapII CCGG 7 cut(s) 35, 179, 192, 198, 410, 609, 630
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 505
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 4 cut(s) 237, 269, 295, 404
HpaII CCGG 7 cut(s) 35, 179, 192, 198, 410, 609, 630
HphI GGTGA 2 cut(s) 377, 399
Hpy188I TCNGA 3 cut(s) 268, 274, 372
Hpy188III TCNNGA 4 cut(s) 169, 292, 299, 443
Hpy99I CGWCG 2 cut(s) 91, 146
HpyAV CCTTC 2 cut(s) 409, 512
HpyCH4III ACNGT 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 1 cut(s) 505
HspAI GCGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 171, 259, 367, 542
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 289, 405
MalI GATC 4 cut(s) 173, 261, 369, 544
MboI GATC 4 cut(s) 171, 259, 367, 542
MboII GAAGA 6 cut(s) 115, 341, 344, 487, 562, 626
MluCI AATT 5 cut(s) 80, 126, 242, 341, 584
MlyI GAGTC 3 cut(s) 263, 289, 413
MnlI CCTC 7 cut(s) 99, 268, 394, 414, 553, 592, 634
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 2 cut(s) 192, 500
MspI CCGG 7 cut(s) 35, 179, 192, 198, 410, 609, 630
MspR9I CCNGG 4 cut(s) 12, 93, 218, 630
MvaI CCWGG 3 cut(s) 12, 93, 218
MvnI CGCG 1 cut(s) 248
NciI CCSGG 1 cut(s) 630
NdeII GATC 4 cut(s) 171, 259, 367, 542
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 3 cut(s) 9, 196, 202
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 2 cut(s) 289, 405
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 1 cut(s) 101
PciI ACATGT 1 cut(s) 501
PfeI GAWTC 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 2 cut(s) 148, 250
PleI GAGTC 3 cut(s) 263, 289, 412
PpsI GAGTC 3 cut(s) 263, 289, 412
PscI ACATGT 1 cut(s) 501
PshAI GACNNNNGTC 1 cut(s) 314
Psp6I CCWGG 3 cut(s) 10, 91, 216
PspGI CCWGG 3 cut(s) 10, 91, 216
PspN4I GGNNCC 3 cut(s) 9, 196, 202
RsaI GTAC 2 cut(s) 110, 506
RsaNI GTAC 2 cut(s) 109, 505
RseI CAYNNNNRTG 2 cut(s) 192, 500
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 2 cut(s) 147, 249
Sau3AI GATC 4 cut(s) 171, 259, 367, 542
SchI GAGTC 3 cut(s) 263, 289, 413
ScrFI CCNGG 4 cut(s) 12, 93, 218, 630
SetI ASST 5 cut(s) 16, 110, 139, 219, 603
SfaNI GCATC 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 101
SgrAI CRCCGGYG 1 cut(s) 409
SmiMI CAYNNNNRTG 2 cut(s) 192, 500
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 5 cut(s) 80, 126, 242, 341, 584
SsiI CCGC 4 cut(s) 120, 248, 251, 424
SspI AATATT 1 cut(s) 636
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 4 cut(s) 10, 91, 216, 628
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 101, 223
TasI AATT 5 cut(s) 80, 126, 242, 341, 584
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TseFI GTSAC 2 cut(s) 289, 405
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 2 cut(s) 289, 405
TspDTI ATGAA 2 cut(s) 92, 531
XapI RAATTY 2 cut(s) 80, 341
XceI RCATGY 1 cut(s) 505
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.