Rmu_sc0006076.1_g000006

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006076.1
OG0010874
Physical Location & Seq
Forward (+)
23313 .. 24119
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006076.1_g000006.1.cds

Sequence Viewer

Length: 687 bp
atgttggtttccggcaaccgtgccgggtttctcgacgtggggtcgagccctagagggccactagacctcaaaatgcaatctccttctccgagtcctagagggttgaagagctatgatgttggtggtgttggcttgggcatagtagctgccttggaaaagtcgagtcacaatggacgtgagattcttgcaaagtattgtgtttgtagtcacagttcgaaccgctcctacccgattccagttaactccggtcaaaaatccgatacaacgggtcttcatgcacttgaggaagaagacagtgaggagaattatacctttgtgacttgccatggaaggaacaagtccatcaccaaggtctactatgatggagttgtttgtactgagcaccatgttagtgttgaaccctgtcatgttaaccataaccataaacaaaaacaagctcctgtgtatcccacgtcggattttctcagctcatgccatttgtgcagcaaaaagcttcatggcaaagatatttacatgtacaggggagagaaggcattttgtagcacagagtgtagagcaacacagatcatgagcgatgagcgcaaagaacagtgcagatcagaagcttcaagaagatctgcagatgtttcgagctcgccttattcgagagatcagatcttcttctctactggtattcttgcgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

228

Amino Acids

25.11

Weight (kDa)

8.02

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 354
AciI CCGC 1 cut(s) 220
AdeI CACNNNGTG 1 cut(s) 549
AfaI GTAC 2 cut(s) 376, 518
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 3 cut(s) 106, 398, 609
AhdI GACNNNNNGTC 1 cut(s) 40
AjiI CACGTC 3 cut(s) 37, 176, 453
AluBI AGCT 7 cut(s) 111, 146, 437, 468, 493, 605, 633
AluI AGCT 7 cut(s) 111, 146, 437, 468, 493, 605, 633
Alw21I GWGCWC 2 cut(s) 384, 635
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 146, 483
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 215
BanII GRGCYC 2 cut(s) 50, 635
BbsI GAAGAC 2 cut(s) 263, 297
Bbv12I GWGCWC 2 cut(s) 384, 635
BbvI GCAGC 2 cut(s) 133, 495
BccI CCATC 2 cut(s) 350, 356
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciVI GTATCC 1 cut(s) 456
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 3 cut(s) 51, 62, 96
BfmI CTRYAG 1 cut(s) 618
BfuI GTATCC 1 cut(s) 456
BglII AGATCT 2 cut(s) 614, 654
BisI GCNGC 2 cut(s) 147, 484
BlsI GCNGC 2 cut(s) 148, 485
Bme1390I CCNGG 1 cut(s) 25
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgBI CACGTC 3 cut(s) 37, 176, 453
BmgT120I GGNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 25
BpiI GAAGAC 2 cut(s) 263, 297
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 150, 325, 348
BsaWI WCCGGW 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 236, 673
BseDI CCNNGG 3 cut(s) 150, 325, 348
BseMII CTCAG 2 cut(s) 369, 478
BseNI ACTGG 2 cut(s) 236, 673
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 133, 495
BsgI GTGCAG 2 cut(s) 502, 613
BshFI GGCC 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 384, 635
BsiSI CCGG 3 cut(s) 12, 24, 246
BsnI GGCC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 50, 384, 635
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 5 cut(s) 564, 596, 614, 649, 654
Bsp19I CCATGG 1 cut(s) 325
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 2 cut(s) 370, 477
BspHI TCATGA 1 cut(s) 567
BspMAI CTGCAG 1 cut(s) 622
BspQI GCTCTTC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 236, 673
BssECI CCNNGG 3 cut(s) 150, 325, 348
BssMI GATC 5 cut(s) 564, 596, 614, 649, 654
BssT1I CCWWGG 3 cut(s) 150, 325, 348
Bst4CI ACNGT 4 cut(s) 20, 212, 296, 591
Bst6I CTCTTC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 2 cut(s) 378, 464
BstDSI CCRYGG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 5 cut(s) 567, 599, 617, 652, 657
BstMBI GATC 5 cut(s) 564, 596, 614, 649, 654
BstMWI GCNNNNNNNGC 2 cut(s) 480, 579
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 133, 495
BstV2I GAAGAC 2 cut(s) 263, 297
BstX2I RGATCY 2 cut(s) 614, 654
BstYI RGATCY 2 cut(s) 614, 654
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 588
BtrI CACGTC 3 cut(s) 37, 176, 453
BtsIMutI CAGTG 2 cut(s) 301, 596
Cac8I GCNNGC 1 cut(s) 635
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 375, 517
CviAII CATG 8 cut(s) 275, 326, 386, 407, 471, 497, 514, 568
CviQI GTAC 2 cut(s) 375, 517
DdeI CTNAG 2 cut(s) 378, 464
DpnI GATC 5 cut(s) 566, 598, 616, 651, 656
DpnII GATC 5 cut(s) 564, 596, 614, 649, 654
DraIII CACNNNGTG 1 cut(s) 549
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 3 cut(s) 150, 325, 348
Eco24I GRGCYC 2 cut(s) 50, 635
Eco53kI GAGCTC 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 633
EcoT14I CCWWGG 3 cut(s) 150, 325, 348
EcoT38I GRGCYC 2 cut(s) 50, 635
ErhI CCWWGG 3 cut(s) 150, 325, 348
FaeI CATG 8 cut(s) 278, 329, 389, 410, 474, 500, 517, 571
FatI CATG 8 cut(s) 274, 325, 385, 406, 470, 496, 513, 567
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 147, 484
FriOI GRGCYC 2 cut(s) 50, 635
Fsp4HI GCNGC 2 cut(s) 147, 484
FspBI CTAG 3 cut(s) 51, 62, 96
GlaI GCGC 1 cut(s) 581
GluI GCNGC 2 cut(s) 147, 484
HaeIII GGCC 1 cut(s) 58
HapII CCGG 3 cut(s) 12, 24, 246
HhaI GCGC 1 cut(s) 582
Hin1II CATG 8 cut(s) 278, 329, 389, 410, 474, 500, 517, 571
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 2 cut(s) 241, 412
HindII GTYRAC 2 cut(s) 241, 412
HindIII AAGCTT 2 cut(s) 491, 603
HinfI GANTC 4 cut(s) 91, 163, 181, 232
HpaI GTTAAC 2 cut(s) 241, 412
HpaII CCGG 3 cut(s) 12, 24, 246
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 3 cut(s) 241, 355, 412
Hpy188I TCNGA 5 cut(s) 90, 259, 457, 601, 654
Hpy188III TCNNGA 4 cut(s) 32, 568, 609, 645
Hpy8I GTNNAC 3 cut(s) 241, 355, 412
Hpy99I CGWCG 2 cut(s) 38, 457
HpyAV CCTTC 3 cut(s) 93, 324, 523
HpyCH4III ACNGT 4 cut(s) 20, 212, 296, 591
HpyCH4IV ACGT 3 cut(s) 36, 175, 452
HpyCH4V TGCA 6 cut(s) 76, 188, 278, 483, 594, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 480, 579
HpyF3I CTNAG 2 cut(s) 378, 464
HpySE526I ACGT 3 cut(s) 36, 175, 452
Hsp92II CATG 8 cut(s) 278, 329, 389, 410, 474, 500, 517, 571
HspAI GCGC 1 cut(s) 580
KspAI GTTAAC 2 cut(s) 241, 412
Kzo9I GATC 5 cut(s) 564, 596, 614, 649, 654
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 227, 442
LpnPI CCDG 8 cut(s) 25, 37, 249, 259, 415, 453, 505, 654
Lsp1109I GCAGC 2 cut(s) 133, 495
MaeI CTAG 3 cut(s) 51, 62, 96
MaeII ACGT 3 cut(s) 36, 175, 452
MaeIII GTNAC 3 cut(s) 164, 206, 316
MalI GATC 5 cut(s) 566, 598, 616, 651, 656
MbiI CCGCTC 1 cut(s) 222
MboI GATC 5 cut(s) 564, 596, 614, 649, 654
MboII GAAGA 7 cut(s) 118, 263, 299, 302, 624, 649, 652
MflI RGATCY 2 cut(s) 614, 654
MhlI GDGCHC 3 cut(s) 50, 384, 635
MluCI AATT 1 cut(s) 304
MlyI GAGTC 2 cut(s) 100, 172
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 5 cut(s) 47, 77, 92, 277, 292
MseI TTAA 2 cut(s) 240, 411
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 3 cut(s) 12, 24, 246
MspR9I CCNGG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 480, 579
NciI CCSGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 325
NdeII GATC 5 cut(s) 564, 596, 614, 649, 654
NlaIII CATG 8 cut(s) 278, 329, 389, 410, 474, 500, 517, 571
NmuCI GTSAC 3 cut(s) 164, 206, 316
NspI RCATGY 1 cut(s) 517
NspV TTCGAA 1 cut(s) 215
PagI TCATGA 1 cut(s) 567
PciI ACATGT 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PfeI GAWTC 2 cut(s) 181, 232
PkrI GCNGC 2 cut(s) 148, 485
PleI GAGTC 2 cut(s) 99, 171
PpsI GAGTC 2 cut(s) 99, 171
PscI ACATGT 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 635
PspPI GGNCC 1 cut(s) 56
PsrI GAACNNNNNNTAC 4 cut(s) 196, 209, 228, 241
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 614, 654
RsaI GTAC 2 cut(s) 376, 518
RsaNI GTAC 2 cut(s) 375, 517
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 240, 411
SatI GCNGC 2 cut(s) 147, 484
Sau3AI GATC 5 cut(s) 564, 596, 614, 649, 654
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 100, 172
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 3 cut(s) 50, 384, 635
SfcI CTRYAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 304
SsiI CCGC 1 cut(s) 220
SspMI CTAG 3 cut(s) 51, 62, 96
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 3 cut(s) 150, 325, 348
TaaI ACNGT 4 cut(s) 20, 212, 296, 591
TaiI ACGT 3 cut(s) 39, 178, 455
TaqI TCGA 6 cut(s) 33, 44, 161, 215, 629, 644
TasI AATT 1 cut(s) 304
TatI WGTACW 2 cut(s) 374, 516
TfiI GAWTC 2 cut(s) 181, 232
Tru1I TTAA 2 cut(s) 240, 411
Tru9I TTAA 2 cut(s) 240, 411
TscAI CASTG 2 cut(s) 301, 596
TseFI GTSAC 3 cut(s) 164, 206, 316
TseI GCWGC 2 cut(s) 146, 483
Tsp45I GTSAC 3 cut(s) 164, 206, 316
TspDTI ATGAA 2 cut(s) 263, 485
TspRI CASTG 2 cut(s) 301, 596
XceI RCATGY 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 3 cut(s) 51, 62, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.