AT1G74940

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010874
Physical Location & Seq
Forward (+)
28145978 .. 28147485
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74940.1

Sequence Viewer

Length: 669 bp
ATGATACTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATGTTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCCAGTCCGAGAAGTCCGTTGGATTTGAACTTCCCCTCCCCGGTTCACTCGAAGCGGTTCGGTTCTGGTGGTGTCGGTTTGGGTATTGTTGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCATGATCCGGTTCGTTACTCCGGGAGATTCAGGTGCCCGGAGATTGATCTGTCGGATGAGGAATACACTTATGTTACGAGCCCAAACGGGCCGACCAAAGTGTATTACAACGACGACGGGTTTGAATTGTCTGAAAATGATTATCGGAGAGTTCATAAACCGATGGTTACCGTCGATGAACCACCGGTTATTGAAAGACAGAGTGTTAGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCTTGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTTGTAGTGCCGAATGCAGATCAGTGCAAATAATGAATGACGAACGACAAGAGCAATGTAAAACGCAAGTTTCAAGAAACGCCGACGTTTTGAGCTCTCCTTACGCCGCCGGACAGAGATTATCTGCCGGAGTATTCGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

222

Amino Acids

24.97

Weight (kDa)

8.12

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 144 - 190 1.7e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AciI CCGC 2 cut(s) 154, 630
AclWI GGATC 2 cut(s) 25, 224
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 2 cut(s) 95, 506
AfiI CCNNNNNNNGG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 501
AgeI ACCGGT 1 cut(s) 409
AgsI TTSAA 5 cut(s) 127, 350, 419, 485, 597
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 1 cut(s) 618
AluI AGCT 1 cut(s) 618
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 2 cut(s) 25, 224
AoxI GGCC 2 cut(s) 99, 314
ApeKI GCWGC 2 cut(s) 74, 191
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AsiGI ACCGGT 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 314, 437
AsuC2I CCSGG 3 cut(s) 140, 247, 263
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 308, 620
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 2 cut(s) 61, 178
BccI CCATC 2 cut(s) 382, 511
BceAI ACGGC 1 cut(s) 114
BcnI CCSGG 3 cut(s) 140, 247, 263
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 68
BisI GCNGC 3 cut(s) 75, 192, 630
BlsI GCNGC 3 cut(s) 76, 193, 631
Bme1390I CCNGG 3 cut(s) 140, 247, 263
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 314, 437
BmiI GGNNCC 3 cut(s) 57, 260, 438
BmrFI CCNGG 3 cut(s) 140, 247, 263
BpuMI CCSGG 3 cut(s) 140, 247, 263
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 3 cut(s) 85, 232, 409
BsaXI ACNNNNNCTCC 3 cut(s) 119, 149, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 2 cut(s) 222, 409
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 584
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 36, 443
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 61, 178
BshFI GGCC 2 cut(s) 101, 316
BshNI GGYRCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 9 cut(s) 86, 140, 223, 233, 246, 263, 410, 633, 651
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 2 cut(s) 101, 316
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 3 cut(s) 263, 308, 620
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 5 cut(s) 30, 68, 229, 271, 542
BspACI CCGC 2 cut(s) 154, 630
BspANI GGCC 2 cut(s) 101, 316
BspCNI CTCAG 2 cut(s) 37, 444
BspLI GGNNCC 3 cut(s) 57, 260, 438
BspPI GGATC 2 cut(s) 25, 224
BspT107I GGYRCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 2 cut(s) 222, 409
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 2 cut(s) 222, 409
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 5 cut(s) 30, 68, 229, 271, 542
Bst4CI ACNGT 1 cut(s) 397
BstAUI TGTACA 1 cut(s) 504
BstDEI CTNAG 3 cut(s) 8, 45, 452
BstEII GGTNACC 1 cut(s) 391
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 5 cut(s) 33, 71, 232, 274, 545
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 5 cut(s) 30, 68, 229, 271, 542
BstNSI RCATGY 1 cut(s) 505
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 138, 245, 261
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 61, 178
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 2 cut(s) 101, 316
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 552
Cfr10I RCCGGY 2 cut(s) 222, 409
Cfr13I GGNCC 2 cut(s) 314, 437
Csp6I GTAC 2 cut(s) 94, 505
CspAI ACCGGT 1 cut(s) 409
CviAII CATG 2 cut(s) 227, 502
CviJI RGCY 4 cut(s) 101, 306, 316, 618
CviKI_1 RGCY 4 cut(s) 101, 306, 316, 618
CviQI GTAC 2 cut(s) 94, 505
DdeI CTNAG 3 cut(s) 8, 45, 452
DpnI GATC 5 cut(s) 32, 70, 231, 273, 544
DpnII GATC 5 cut(s) 30, 68, 229, 271, 542
EaeI YGGCCR 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 308, 620
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 618
Eco91I GGTNACC 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 618
EcoO65I GGTNACC 1 cut(s) 391
EcoT38I GRGCYC 2 cut(s) 308, 620
FaeI CATG 2 cut(s) 230, 505
FaiI YATR 6 cut(s) 228, 297, 381, 497, 499, 503
FatI CATG 2 cut(s) 226, 501
Fnu4HI GCNGC 3 cut(s) 75, 192, 630
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 2 cut(s) 308, 620
Fsp4HI GCNGC 3 cut(s) 75, 192, 630
FspBI CTAG 1 cut(s) 207
GluI GCNGC 3 cut(s) 75, 192, 630
HaeIII GGCC 2 cut(s) 101, 316
HapII CCGG 9 cut(s) 86, 140, 223, 233, 246, 263, 410, 633, 651
Hin1II CATG 2 cut(s) 230, 505
HinfI GANTC 1 cut(s) 252
HpaII CCGG 9 cut(s) 86, 140, 223, 233, 246, 263, 410, 633, 651
Hpy166II GTNNAC 2 cut(s) 96, 145
Hpy188I TCNGA 6 cut(s) 46, 108, 280, 358, 372, 453
Hpy188III TCNNGA 1 cut(s) 597
Hpy8I GTNNAC 2 cut(s) 96, 145
Hpy99I CGWCG 4 cut(s) 341, 344, 401, 611
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 2 cut(s) 540, 550
HpyF3I CTNAG 3 cut(s) 8, 45, 452
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 2 cut(s) 230, 505
Kzo9I GATC 5 cut(s) 30, 68, 229, 271, 542
Lsp1109I GCAGC 2 cut(s) 61, 178
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 3 cut(s) 239, 298, 391
MalI GATC 5 cut(s) 32, 70, 231, 273, 544
MboI GATC 5 cut(s) 30, 68, 229, 271, 542
MboII GAAGA 1 cut(s) 487
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 3 cut(s) 263, 308, 620
MluCI AATT 2 cut(s) 38, 350
MmeI TCCRAC 4 cut(s) 99, 177, 258, 464
MnlI CCTC 5 cut(s) 30, 82, 145, 193, 277
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 81, 219
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 9 cut(s) 86, 140, 223, 233, 246, 263, 410, 633, 651
MspR9I CCNGG 3 cut(s) 140, 247, 263
Mva1269I GAATGC 1 cut(s) 542
NciI CCSGG 3 cut(s) 140, 247, 263
NdeII GATC 5 cut(s) 30, 68, 229, 271, 542
NlaIII CATG 2 cut(s) 230, 505
NlaIV GGNNCC 3 cut(s) 57, 260, 438
NspI RCATGY 1 cut(s) 505
PciI ACATGT 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 252
PfoI TCCNGGA 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 409
PkrI GCNGC 3 cut(s) 76, 193, 631
PscI ACATGT 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 620
PspEI GGTNACC 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 57, 260, 438
PspPI GGNCC 2 cut(s) 314, 437
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 2 cut(s) 95, 506
RsaNI GTAC 2 cut(s) 94, 505
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 620
SaqAI TTAA 2 cut(s) 81, 219
SatI GCNGC 3 cut(s) 75, 192, 630
Sau3AI GATC 5 cut(s) 30, 68, 229, 271, 542
Sau96I GGNCC 2 cut(s) 314, 437
ScrFI CCNGG 3 cut(s) 140, 247, 263
SduI GDGCHC 3 cut(s) 263, 308, 620
SetI ASST 4 cut(s) 22, 260, 612, 620
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 2 cut(s) 38, 350
SsiI CCGC 2 cut(s) 154, 630
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 620
StyD4I CCNGG 3 cut(s) 138, 245, 261
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 612
TaqI TCGA 2 cut(s) 149, 399
TasI AATT 2 cut(s) 38, 350
TatI WGTACW 2 cut(s) 93, 504
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 81, 219
Tru9I TTAA 2 cut(s) 81, 219
TscAI CASTG 1 cut(s) 552
TseI GCWGC 2 cut(s) 74, 191
TspDTI ATGAA 3 cut(s) 368, 417, 572
TspGWI ACGGA 2 cut(s) 23, 105
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 437
XceI RCATGY 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.