MD15G1220800.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010874
Physical Location & Seq
Reverse (-)
17857901 .. 17859150
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1220800.v1.1.491

Sequence Viewer

Length: 741 bp
ATGTTGAAGTTTGGCAAGAGACCTCTCCCGATGGTCGGAAGGATATCGGAACTCCTAGTTTCCGGCAGCAGTGCCGGGTTTTCTGACACGGGCACAAGCCCTAGAGGTCCACTGGACCTCAAGATACAACCTACTTCAAGTCCTAGAGGCGTAAAGAGCTATGACGTTGGTGGTGTTGGGTTGGGAATAGTAGCTGCCCTGGAAAAATCAACCCATAACGGACGTGAAATATTGGCAAAATACGCTGTGTTCTGTCCGAACACGAACCGGTCCGACCCGATTCCGGTGAATTCGGGTCAAAACTGTGATGGGTTTTCATCAGGAGGTGTCCAAGAATTTGAGGAAGATAGTTCAGAGAATTATACTTACGTGACTCTACGTGGACAAAAAAAGTCATGCACAAAGGTGTACTACGACGGTGATGACTGCGCAGGAAGTGCCAGGCACCGCCGTGCCAGTTGCGGTGGTTTGACTATATGTGCTGATGATCTTGAAAGTTCGGTTTTTCCTACATCGGATTTCCTCAGTTGCTGCCATTTGTGCAAGAAAAACCTCCATGGCAAGGACATATACATGTACAGAGGAGAAAAAGCATTTTGTAGCACAGAATGTCGGTCAACCCAGATAGTTGCCGACGAGAGGAAAGAGCAGTGCAGATTAGACGCTTCGAGATCTCCGGATGTTTCGAGCTCGTCTTATTCCAAAGATGAGATCTTCTCTACTGGGATTCTTGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

247

Amino Acids

26.59

Weight (kDa)

6.87

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 167 - 215 6.2e-23 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 2 cut(s) 448, 462
AcsI RAATTY 2 cut(s) 289, 335
AfaI GTAC 2 cut(s) 410, 578
AfiI CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
AflIII ACRYGT 1 cut(s) 573
AgeI ACCGGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 7, 138, 494
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 2 cut(s) 198, 440
AleI CACNNNNGTG 2 cut(s) 404, 450
AluBI AGCT 3 cut(s) 159, 194, 690
AluI AGCT 3 cut(s) 159, 194, 690
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 531
Aor13HI TCCGGA 1 cut(s) 676
ApeKI GCWGC 3 cut(s) 66, 194, 531
ApoI RAATTY 2 cut(s) 289, 335
AsiGI ACCGGT 1 cut(s) 267
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 107, 115, 270
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 298, 431
AvaII GGWCC 3 cut(s) 107, 115, 270
BaeGI GKGCMC 1 cut(s) 95
BanI GGYRCC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 3 cut(s) 78, 181, 518
BccI CCATC 2 cut(s) 25, 302
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 2 cut(s) 200, 442
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 56, 102, 144
BglII AGATCT 2 cut(s) 671, 711
BisI GCNGC 3 cut(s) 67, 195, 532
BlsI GCNGC 3 cut(s) 68, 196, 533
Bme1390I CCNGG 3 cut(s) 76, 200, 442
Bme18I GGWCC 3 cut(s) 107, 115, 270
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 107, 115, 270
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 3 cut(s) 76, 200, 442
BmrI ACTGGG 1 cut(s) 732
BmuI ACTGGG 1 cut(s) 732
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 2 cut(s) 370, 380
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 198, 556
BsaWI WCCGGW 3 cut(s) 267, 283, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 117, 456, 727
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 2 cut(s) 200, 442
BseDI CCNNGG 2 cut(s) 198, 556
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
BseMII CTCAG 1 cut(s) 538
BseNI ACTGG 3 cut(s) 117, 456, 727
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 3 cut(s) 78, 181, 518
BsgI GTGCAG 1 cut(s) 673
BshNI GGYRCC 1 cut(s) 444
BshTI ACCGGT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 5 cut(s) 63, 75, 268, 284, 677
BslI CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
BsmAI GTCTC 1 cut(s) 13
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 95, 692
Bsp13I TCCGGA 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 3 cut(s) 487, 671, 711
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 2 cut(s) 448, 462
BspCNI CTCAG 1 cut(s) 537
BspEI TCCGGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 3 cut(s) 117, 456, 727
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 198, 556
BssMI GATC 3 cut(s) 487, 671, 711
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 2 cut(s) 200, 442
Bst4CI ACNGT 2 cut(s) 305, 419
BstAPI GCANNNNNTGC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 576
BstBAI YACGTR 2 cut(s) 370, 380
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 1 cut(s) 685
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 3 cut(s) 490, 674, 714
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 487, 671, 711
BstMWI GCNNNNNNNGC 4 cut(s) 156, 242, 437, 540
BstNI CCWGG 2 cut(s) 200, 442
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 74, 198, 440
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 78, 181, 518
BstX2I RGATCY 2 cut(s) 671, 711
BstYI RGATCY 2 cut(s) 671, 711
BtgI CCRYGG 1 cut(s) 556
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 2 cut(s) 76, 656
BtsIMutI CAGTG 3 cut(s) 76, 110, 656
CaiI CAGNNNCTG 1 cut(s) 531
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 3 cut(s) 107, 115, 270
CpoI CGGWCCG 1 cut(s) 270
CseI GACGC 1 cut(s) 671
Csp6I GTAC 2 cut(s) 409, 577
CspAI ACCGGT 1 cut(s) 267
CspI CGGWCCG 1 cut(s) 270
CviAII CATG 3 cut(s) 396, 557, 574
CviJI RGCY 4 cut(s) 99, 159, 194, 690
CviKI_1 RGCY 4 cut(s) 99, 159, 194, 690
CviQI GTAC 2 cut(s) 409, 577
DdeI CTNAG 1 cut(s) 524
DpnI GATC 3 cut(s) 489, 673, 713
DpnII GATC 3 cut(s) 487, 671, 711
Ecl136II GAGCTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 45
Eco47I GGWCC 3 cut(s) 107, 115, 270
Eco53kI GAGCTC 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 198, 440
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 3 cut(s) 399, 560, 577
FatI CATG 3 cut(s) 395, 556, 573
Fnu4HI GCNGC 3 cut(s) 67, 195, 532
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 3 cut(s) 67, 195, 532
FspBI CTAG 3 cut(s) 56, 102, 144
FspI TGCGCA 1 cut(s) 430
GlaI GCGC 1 cut(s) 430
GluI GCNGC 3 cut(s) 67, 195, 532
HapII CCGG 5 cut(s) 63, 75, 268, 284, 677
HgaI GACGC 1 cut(s) 671
HhaI GCGC 1 cut(s) 431
Hin1II CATG 3 cut(s) 399, 560, 577
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 3 cut(s) 280, 373, 727
HpaII CCGG 5 cut(s) 63, 75, 268, 284, 677
HphI GGTGA 2 cut(s) 298, 431
Hpy166II GTNNAC 4 cut(s) 110, 383, 409, 618
Hpy188I TCNGA 7 cut(s) 38, 49, 85, 258, 274, 355, 517
Hpy188III TCNNGA 6 cut(s) 28, 121, 321, 491, 669, 677
Hpy8I GTNNAC 4 cut(s) 110, 383, 409, 618
Hpy99I CGWCG 2 cut(s) 419, 638
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 305, 419
HpyCH4IV ACGT 4 cut(s) 165, 223, 369, 379
HpyCH4V TGCA 3 cut(s) 399, 543, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 242, 437, 540
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 4 cut(s) 165, 223, 369, 379
Hsp92II CATG 3 cut(s) 399, 560, 577
HspAI GCGC 1 cut(s) 429
Kpn2I TCCGGA 1 cut(s) 676
Kzo9I GATC 3 cut(s) 487, 671, 711
Lsp1109I GCAGC 3 cut(s) 78, 181, 518
MaeI CTAG 3 cut(s) 56, 102, 144
MaeII ACGT 4 cut(s) 165, 223, 369, 379
MaeIII GTNAC 1 cut(s) 370
MalI GATC 3 cut(s) 489, 673, 713
MboI GATC 3 cut(s) 487, 671, 711
MboII GAAGA 2 cut(s) 356, 706
MflI RGATCY 2 cut(s) 671, 711
MhlI GDGCHC 2 cut(s) 95, 692
MluCI AATT 3 cut(s) 289, 335, 358
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 2 cut(s) 16, 297
MroI TCCGGA 1 cut(s) 676
MseI TTAA 1 cut(s) 739
MslI CAYNNNNRTG 3 cut(s) 404, 450, 572
MspI CCGG 5 cut(s) 63, 75, 268, 284, 677
MspR9I CCNGG 3 cut(s) 76, 200, 442
MvaI CCWGG 2 cut(s) 200, 442
MwoI GCNNNNNNNGC 4 cut(s) 156, 242, 437, 540
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 556
NdeII GATC 3 cut(s) 487, 671, 711
NlaIII CATG 3 cut(s) 399, 560, 577
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 370
NsbI TGCGCA 1 cut(s) 430
NspI RCATGY 1 cut(s) 577
OliI CACNNNNGTG 2 cut(s) 404, 450
PciI ACATGT 1 cut(s) 573
PfeI GAWTC 2 cut(s) 280, 727
PinAI ACCGGT 1 cut(s) 267
PkrI GCNGC 3 cut(s) 68, 196, 533
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 2 cut(s) 370, 380
PscI ACATGT 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 198, 440
PspGI CCWGG 2 cut(s) 198, 440
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 3 cut(s) 107, 115, 270
PstNI CAGNNNCTG 1 cut(s) 531
PsuI RGATCY 2 cut(s) 671, 711
RsaI GTAC 2 cut(s) 410, 578
RsaNI GTAC 2 cut(s) 409, 577
RseI CAYNNNNRTG 3 cut(s) 404, 450, 572
Rsr2I CGGWCCG 1 cut(s) 270
RsrII CGGWCCG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 739
SatI GCNGC 3 cut(s) 67, 195, 532
Sau3AI GATC 3 cut(s) 487, 671, 711
Sau96I GGNCC 3 cut(s) 107, 115, 270
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 3 cut(s) 76, 200, 442
SduI GDGCHC 2 cut(s) 95, 692
SinI GGWCC 3 cut(s) 107, 115, 270
SmiMI CAYNNNNRTG 3 cut(s) 404, 450, 572
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 289, 335, 358
SsiI CCGC 2 cut(s) 448, 462
SspI AATATT 1 cut(s) 231
SspMI CTAG 3 cut(s) 56, 102, 144
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 3 cut(s) 74, 198, 440
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 305, 419
TaiI ACGT 4 cut(s) 168, 226, 372, 382
TaqI TCGA 2 cut(s) 668, 686
TaqII GACCGA 1 cut(s) 603
TasI AATT 3 cut(s) 289, 335, 358
TatI WGTACW 2 cut(s) 408, 576
TfiI GAWTC 2 cut(s) 280, 727
Tru1I TTAA 1 cut(s) 739
Tru9I TTAA 1 cut(s) 739
TscAI CASTG 3 cut(s) 76, 117, 656
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 3 cut(s) 66, 194, 531
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 76, 117, 656
VpaK11BI GGWCC 3 cut(s) 107, 115, 270
XapI RAATTY 2 cut(s) 289, 335
XceI RCATGY 1 cut(s) 577
XspI CTAG 3 cut(s) 56, 102, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.