Prupe.7G194600_v2.0.a1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010874
Physical Location & Seq
Forward (+)
18475655 .. 18477296
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G194600.1

Sequence Viewer

Length: 741 bp
ATGTTGAAGTTTGGCAAGAGGCCATTTCCAATGATCGGGAAGCTGTCGGAATTGCTAGTTTCCGGCAACCGTGCCGGGTTTTTCTTCGACATGGGCACGACAAGCCCAAGAAGTCCATTAGACCTCAAGATGCAATCTTCTAGCCCCAGAGGGTTGAAGAATTATGATCTTGGTGGTGTTGGGTTGGGCATAGTTGCTGCCTTGGAAAAGTCGAGCCATAATGGACGTGAGATTTTGGCCAAGTATGCGGTTTGTGGTCAAAACCTGAACCAATCAGAGCCAATTCCTGTAAGCTCTGCTCAAAACTGTGATGGGTTTTCAACCAGGGGTCTCCCGGAGTTTGAGGAAGATAGCTTGGAGAATTATACTTATGTGACTCAGCGTGGACGCAACAAGTCTTTCACTAGGGTTTACTATGATGGAGGTGACTGCAAAACCAGTTCCATGCACCATCGTGTAGAGGATGATTTGCAGACATGTAATGATAACAATCTTGCTTCTGTTTTTCCCACCTCGGATTTTCTCAGTTCATGCCATTTGTGCAAGAAAAACCTCCACGGCAAAGACATATACATGTACAGAGGAGAGAGTGCGTTTTGTAGCACAGAATGCAGAGCAACGCAGATGATGATGGATGAGAGCAAAGAACGATGCAGATCAGAAGCTTTAAGATCGGTAGAAGTTTCAGGGTCATCTTGTTCAAGAGATCAGATCTTCTCAACTGGGATTCTTGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

247

Amino Acids

27.26

Weight (kDa)

6.94

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 248
AcoI YGGCCR 1 cut(s) 237
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 2 cut(s) 476, 573
AgsI TTSAA 4 cut(s) 7, 157, 321, 702
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 1 cut(s) 323
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 4 cut(s) 43, 294, 354, 665
AluI AGCT 4 cut(s) 43, 294, 354, 665
Alw26I GTCTC 1 cut(s) 335
AoxI GGCC 2 cut(s) 20, 237
ApeKI GCWGC 1 cut(s) 197
AsuC2I CCSGG 2 cut(s) 76, 335
AsuHPI GGTGA 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 239
BbvI GCAGC 1 cut(s) 184
BccI CCATC 4 cut(s) 305, 413, 459, 625
BceAI ACGGC 1 cut(s) 574
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 2 cut(s) 76, 335
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 3 cut(s) 56, 141, 405
BglII AGATCT 1 cut(s) 711
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 76, 325, 335
BmgBI CACGTC 1 cut(s) 227
BmrFI CCNGG 3 cut(s) 76, 325, 335
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 2 cut(s) 120, 641
BmuI ACTGGG 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 76, 335
BsaBI GATNNNNATC 2 cut(s) 489, 655
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 4 cut(s) 201, 324, 513, 556
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 438, 727
Bse8I GATNNNNATC 2 cut(s) 489, 655
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 4 cut(s) 201, 324, 513, 556
BseGI GGATG 2 cut(s) 469, 640
BseJI GATNNNNATC 2 cut(s) 489, 655
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 392, 538
BseNI ACTGG 2 cut(s) 438, 727
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 22, 239
BsiSI CCGG 3 cut(s) 63, 75, 335
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 2 cut(s) 22, 239
Bso31I GGTCTC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 6 cut(s) 33, 166, 656, 671, 706, 711
BspACI CCGC 1 cut(s) 248
BspANI GGCC 2 cut(s) 22, 239
BspCNI CTCAG 2 cut(s) 391, 537
BspTNI GGTCTC 1 cut(s) 335
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 2 cut(s) 438, 727
BssECI CCNNGG 4 cut(s) 201, 324, 513, 556
BssMI GATC 6 cut(s) 33, 166, 656, 671, 706, 711
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 71, 308
BstAPI GCANNNNNTGC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 576
BstDEI CTNAG 2 cut(s) 378, 524
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 2 cut(s) 469, 640
BstKTI GATC 6 cut(s) 36, 169, 659, 674, 709, 714
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 6 cut(s) 33, 166, 656, 671, 706, 711
BstMWI GCNNNNNNNGC 4 cut(s) 102, 245, 540, 609
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 2 cut(s) 480, 577
BstSCI CCNGG 3 cut(s) 74, 323, 333
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 2 cut(s) 22, 239
BtgI CCRYGG 1 cut(s) 556
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 469, 640
CseI GACGC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 577
CviAII CATG 5 cut(s) 91, 445, 477, 531, 574
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 378, 524
DpnI GATC 6 cut(s) 35, 168, 658, 673, 708, 713
DpnII GATC 6 cut(s) 33, 166, 656, 671, 706, 711
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 5 cut(s) 94, 448, 480, 534, 577
FatI CATG 5 cut(s) 90, 444, 476, 530, 573
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 476, 647
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 56, 141, 405
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 22, 239
HapII CCGG 3 cut(s) 63, 75, 335
HgaI GACGC 1 cut(s) 396
Hin1II CATG 5 cut(s) 94, 448, 480, 534, 577
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 2 cut(s) 376, 727
HpaII CCGG 3 cut(s) 63, 75, 335
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 386, 412
Hpy188I TCNGA 5 cut(s) 49, 277, 517, 661, 711
Hpy188III TCNNGA 3 cut(s) 37, 127, 702
Hpy8I GTNNAC 2 cut(s) 386, 412
HpyCH4III ACNGT 2 cut(s) 71, 308
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 7 cut(s) 133, 432, 448, 472, 543, 612, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 245, 540, 609
HpyF3I CTNAG 2 cut(s) 378, 524
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 5 cut(s) 94, 448, 480, 534, 577
Kzo9I GATC 6 cut(s) 33, 166, 656, 671, 706, 711
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 120, 641
MaeI CTAG 3 cut(s) 56, 141, 405
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 373, 425
MalI GATC 6 cut(s) 35, 168, 658, 673, 708, 713
MboI GATC 6 cut(s) 33, 166, 656, 671, 706, 711
MboII GAAGA 5 cut(s) 76, 129, 169, 359, 706
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 4 cut(s) 50, 160, 282, 361
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 9 cut(s) 12, 134, 143, 337, 416, 454, 523, 563, 575
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 2 cut(s) 453, 572
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 3 cut(s) 63, 75, 335
MspR9I CCNGG 3 cut(s) 76, 325, 335
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 4 cut(s) 102, 245, 540, 609
NciI CCSGG 2 cut(s) 76, 335
NdeII GATC 6 cut(s) 33, 166, 656, 671, 706, 711
NlaIII CATG 5 cut(s) 94, 448, 480, 534, 577
NmuCI GTSAC 2 cut(s) 373, 425
NspI RCATGY 2 cut(s) 480, 577
OliI CACNNNNGTG 1 cut(s) 453
PciI ACATGT 2 cut(s) 476, 573
PctI GAATGC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 727
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 2 cut(s) 476, 573
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 711
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 2 cut(s) 453, 572
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 6 cut(s) 33, 166, 656, 671, 706, 711
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 3 cut(s) 76, 325, 335
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 2 cut(s) 120, 641
SmiMI CAYNNNNRTG 2 cut(s) 453, 572
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 4 cut(s) 50, 160, 282, 361
SsiI CCGC 1 cut(s) 248
SspMI CTAG 3 cut(s) 56, 141, 405
StyD4I CCNGG 3 cut(s) 74, 323, 333
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 71, 308
TaiI ACGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 87, 212
TasI AATT 4 cut(s) 50, 160, 282, 361
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TseFI GTSAC 2 cut(s) 373, 425
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 2 cut(s) 373, 425
TspDTI ATGAA 1 cut(s) 519
XceI RCATGY 2 cut(s) 480, 577
XspI CTAG 3 cut(s) 56, 141, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.