Rh2DG100600

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010874
Physical Location & Seq
Reverse (-)
8077943 .. 8079783
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG100600.1

Sequence Viewer

Length: 738 bp
ATGTTGACGTTGGGCAAGAAACCTCTCCCAATGATAGGAAAGCTGTCAGAAATGTTGGTTTCCGGCAACCGTGCCGGGTTTCTCGACGTGGGGTCGAGCCCTAGAGGGCCACTAGACCTCAAGATGCAATCTCCTTCTCCGAGTCCTAGAGGGTTGAAGTGCTATGATGTTGGTGGTGTTGGCTTGGGCATAGTAGCTGCCTTGGAAAAGTCGAGTCACAATGGACGTGAGATTCTTGCAAAGTATTGTGTTTGTAGTCACAGTTCGAACCGCTCCGACCCGATTCCGGTTAACTCCGGTCAAAAATCCGATACAACGGGTCTTCATGCACTTGAGGAAGAAGACAGTGAGGAGAATTATACCTTTGTGACTTGCCATGGAAGAAACAAGTCCATCACCAAGGTCTACTATGATGGAGTTGTTTGTACTGAGCACCGTGTTAGTGTTGAACCCTGTCATGTTAACCATAACCATAAACAAAAACAAGCTCCTGTGTATCCCACGTCGGATTTTCTCAGCTCATGCCATTTGTGCAGCCAAAAGCTTCATGGCAAAGATATTTACATGTACAGGGGAGAGAAGGCATTTTGTAGCACAGAGTGTAGAGCAAAACAGATTATGAGCGATGAGCGCAAAGAACAGTGCAGATCAGAAGCTTCAAGAAGATCTGCAGATGTTTCGAGCTCGCCTTATTCGAGAGATCAGATCTTCTTCTCTACTGGTATTCTTGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

245

Amino Acids

26.96

Weight (kDa)

8.44

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 164 - 212 8.5e-23 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 405
AciI CCGC 1 cut(s) 271
AdeI CACNNNGTG 1 cut(s) 600
AfaI GTAC 2 cut(s) 427, 569
AfiI CCNNNNNNNGG 2 cut(s) 35, 286
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 3 cut(s) 157, 449, 660
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 3 cut(s) 88, 227, 504
AluBI AGCT 7 cut(s) 43, 197, 488, 519, 544, 656, 684
AluI AGCT 7 cut(s) 43, 197, 488, 519, 544, 656, 684
Alw21I GWGCWC 2 cut(s) 435, 686
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 197, 534
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 388
AsuII TTCGAA 1 cut(s) 266
BanII GRGCYC 2 cut(s) 101, 686
BbsI GAAGAC 2 cut(s) 314, 348
Bbv12I GWGCWC 2 cut(s) 435, 686
BbvI GCAGC 2 cut(s) 184, 546
BccI CCATC 2 cut(s) 401, 407
BcgI CGANNNNNNTGC 2 cut(s) 660, 694
BciVI GTATCC 1 cut(s) 507
BcnI CCSGG 1 cut(s) 76
BfaI CTAG 3 cut(s) 102, 113, 147
BfmI CTRYAG 1 cut(s) 669
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 2 cut(s) 665, 705
BisI GCNGC 2 cut(s) 198, 535
BlsI GCNGC 2 cut(s) 199, 536
Bme1390I CCNGG 1 cut(s) 76
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgBI CACGTC 3 cut(s) 88, 227, 504
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 314, 348
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 104, 353
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 201, 376, 399
BsaWI WCCGGW 2 cut(s) 286, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 286
Bse1I ACTGG 1 cut(s) 724
BseDI CCNNGG 3 cut(s) 201, 376, 399
BseLI CCNNNNNNNGG 2 cut(s) 35, 286
BseMII CTCAG 2 cut(s) 420, 529
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 2 cut(s) 184, 546
BsgI GTGCAG 2 cut(s) 553, 664
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 435, 686
BsiSI CCGG 4 cut(s) 63, 75, 287, 297
BslI CCNNNNNNNGG 2 cut(s) 35, 286
BsnI GGCC 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 101, 435, 686
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 4 cut(s) 647, 665, 700, 705
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 421, 528
BspMAI CTGCAG 1 cut(s) 673
BspT104I TTCGAA 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 3 cut(s) 201, 376, 399
BssMI GATC 4 cut(s) 647, 665, 700, 705
BssT1I CCWWGG 3 cut(s) 201, 376, 399
Bst4CI ACNGT 5 cut(s) 71, 263, 347, 437, 642
BstAUI TGTACA 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 2 cut(s) 429, 515
BstDSI CCRYGG 1 cut(s) 376
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 4 cut(s) 650, 668, 703, 708
BstMBI GATC 4 cut(s) 647, 665, 700, 705
BstMWI GCNNNNNNNGC 2 cut(s) 531, 630
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 184, 546
BstV2I GAAGAC 2 cut(s) 314, 348
BstX2I RGATCY 2 cut(s) 665, 705
BstYI RGATCY 2 cut(s) 665, 705
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 639
BtrI CACGTC 3 cut(s) 88, 227, 504
BtsIMutI CAGTG 2 cut(s) 352, 647
Cac8I GCNNGC 1 cut(s) 686
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 426, 568
CviAII CATG 6 cut(s) 326, 377, 458, 522, 548, 565
CviQI GTAC 2 cut(s) 426, 568
DdeI CTNAG 2 cut(s) 429, 515
DpnI GATC 4 cut(s) 649, 667, 702, 707
DpnII GATC 4 cut(s) 647, 665, 700, 705
DraIII CACNNNGTG 1 cut(s) 600
DriI GACNNNNNGTC 1 cut(s) 91
Eam1105I GACNNNNNGTC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 684
Eco130I CCWWGG 3 cut(s) 201, 376, 399
Eco24I GRGCYC 2 cut(s) 101, 686
Eco53kI GAGCTC 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 684
EcoT14I CCWWGG 3 cut(s) 201, 376, 399
EcoT38I GRGCYC 2 cut(s) 101, 686
ErhI CCWWGG 3 cut(s) 201, 376, 399
FaeI CATG 6 cut(s) 329, 380, 461, 525, 551, 568
FatI CATG 6 cut(s) 325, 376, 457, 521, 547, 564
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 198, 535
FriOI GRGCYC 2 cut(s) 101, 686
Fsp4HI GCNGC 2 cut(s) 198, 535
FspBI CTAG 3 cut(s) 102, 113, 147
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 198, 535
HaeIII GGCC 1 cut(s) 109
HapII CCGG 4 cut(s) 63, 75, 287, 297
HhaI GCGC 1 cut(s) 633
Hin1II CATG 6 cut(s) 329, 380, 461, 525, 551, 568
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 3 cut(s) 6, 292, 463
HindII GTYRAC 3 cut(s) 6, 292, 463
HindIII AAGCTT 2 cut(s) 542, 654
HinfI GANTC 4 cut(s) 142, 214, 232, 283
HpaI GTTAAC 2 cut(s) 292, 463
HpaII CCGG 4 cut(s) 63, 75, 287, 297
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 4 cut(s) 6, 292, 406, 463
Hpy188I TCNGA 7 cut(s) 49, 141, 277, 310, 508, 652, 705
Hpy188III TCNNGA 4 cut(s) 83, 121, 660, 696
Hpy8I GTNNAC 4 cut(s) 6, 292, 406, 463
Hpy99I CGWCG 2 cut(s) 89, 508
HpyAV CCTTC 2 cut(s) 144, 574
HpyCH4III ACNGT 5 cut(s) 71, 263, 347, 437, 642
HpyCH4IV ACGT 4 cut(s) 8, 87, 226, 503
HpyCH4V TGCA 6 cut(s) 127, 239, 329, 534, 645, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 531, 630
HpyF3I CTNAG 2 cut(s) 429, 515
HpySE526I ACGT 4 cut(s) 8, 87, 226, 503
Hsp92II CATG 6 cut(s) 329, 380, 461, 525, 551, 568
HspAI GCGC 1 cut(s) 631
KspAI GTTAAC 2 cut(s) 292, 463
Kzo9I GATC 4 cut(s) 647, 665, 700, 705
LmnI GCTCC 2 cut(s) 278, 493
LpnPI CCDG 8 cut(s) 76, 88, 300, 310, 466, 504, 556, 705
Lsp1109I GCAGC 2 cut(s) 184, 546
LweI GCATC 1 cut(s) 114
MaeI CTAG 3 cut(s) 102, 113, 147
MaeII ACGT 4 cut(s) 8, 87, 226, 503
MaeIII GTNAC 3 cut(s) 215, 257, 367
MalI GATC 4 cut(s) 649, 667, 702, 707
MbiI CCGCTC 1 cut(s) 273
MboI GATC 4 cut(s) 647, 665, 700, 705
MboII GAAGA 7 cut(s) 314, 350, 353, 393, 675, 700, 703
MflI RGATCY 2 cut(s) 665, 705
MhlI GDGCHC 3 cut(s) 101, 435, 686
MluCI AATT 1 cut(s) 355
MlyI GAGTC 2 cut(s) 151, 223
MmeI TCCRAC 2 cut(s) 300, 486
MnlI CCTC 6 cut(s) 33, 98, 128, 143, 328, 343
MseI TTAA 2 cut(s) 291, 462
MspI CCGG 4 cut(s) 63, 75, 287, 297
MspR9I CCNGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 531, 630
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 376
NdeII GATC 4 cut(s) 647, 665, 700, 705
NlaIII CATG 6 cut(s) 329, 380, 461, 525, 551, 568
NmuCI GTSAC 3 cut(s) 215, 257, 367
NspI RCATGY 1 cut(s) 568
NspV TTCGAA 1 cut(s) 266
PciI ACATGT 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PfeI GAWTC 2 cut(s) 232, 283
PkrI GCNGC 2 cut(s) 199, 536
PleI GAGTC 2 cut(s) 150, 222
PpsI GAGTC 2 cut(s) 150, 222
PscI ACATGT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 686
PspPI GGNCC 1 cut(s) 107
PsrI GAACNNNNNNTAC 2 cut(s) 247, 279
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 2 cut(s) 665, 705
RsaI GTAC 2 cut(s) 427, 569
RsaNI GTAC 2 cut(s) 426, 568
SacI GAGCTC 1 cut(s) 686
SaqAI TTAA 2 cut(s) 291, 462
SatI GCNGC 2 cut(s) 198, 535
Sau3AI GATC 4 cut(s) 647, 665, 700, 705
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 151, 223
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 3 cut(s) 101, 435, 686
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 119, 332
SmoI CTYRAG 2 cut(s) 119, 332
Sse9I AATT 1 cut(s) 355
SsiI CCGC 1 cut(s) 271
SspMI CTAG 3 cut(s) 102, 113, 147
SstI GAGCTC 1 cut(s) 686
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 3 cut(s) 201, 376, 399
TaaI ACNGT 5 cut(s) 71, 263, 347, 437, 642
TaiI ACGT 4 cut(s) 11, 90, 229, 506
TaqI TCGA 6 cut(s) 84, 95, 212, 266, 680, 695
TasI AATT 1 cut(s) 355
TatI WGTACW 2 cut(s) 425, 567
TfiI GAWTC 2 cut(s) 232, 283
Tru1I TTAA 2 cut(s) 291, 462
Tru9I TTAA 2 cut(s) 291, 462
TscAI CASTG 2 cut(s) 352, 647
TseFI GTSAC 3 cut(s) 215, 257, 367
TseI GCWGC 2 cut(s) 197, 534
Tsp45I GTSAC 3 cut(s) 215, 257, 367
TspDTI ATGAA 2 cut(s) 314, 536
TspRI CASTG 2 cut(s) 352, 647
XceI RCATGY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 3 cut(s) 102, 113, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.