pycom02g07610

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010874
Physical Location & Seq
Reverse (-)
5332669 .. 5333770
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07610.2

Sequence Viewer

Length: 894 bp
ATGATTTCATGGGTGTTTGAAAACAATCATCACCCACATAATTCCAAAACAAAACCATGGGCTAAGTCCCATGTCCACCCACTCCACCATCATATATTGAGGAGCCTAAAACCTAAGAGCATTCCAAACACGCTTGACACTTTCACTTTTCTTATGTTGAAGTTTGCCAAGAGACCTTTCCCGATGATCGGAAAGATATCGGAACTCCTAGTTTCCGGCAACCGTGCCGGGTTTTCCGACACGGAGACAAGCCCTAGAAGTCCATTGGACCTCAAGATGCAACCTTCTCCAAGTCCTAGAGGCTTGAAGAGCTATGACGTTGGCGGTGTAGGGTTGGGCATATTAGCTGCCTTGGAAAAATCAGCCCATAACGGACGTGAAATATTGGCAAAATACGGCGTGTTCTGTCCGAACAGGAACCGGTCCGACCCGATTCCCGTGAACTCGGGTAAAAACAGTGATGGGTTTTCGTCAAGAGGTGGCCAAGAATTTGAGGAAGATAGTCTGGAGAATTATACTTACGTGACTCTTCGTGGACAAAACAAGCCGTGTACGAAGGTGTACTATGACGGAGGTGACTGCGCGGGAAGTGCCATGCACTGCCGTACCGGTTACGGTGGTTTGACTATATGTGACGATGATCTTGAAAGCTCGGTTTTTCCGACGTCGGATTTTCTCAGTTGCTGCCATTTGTGCAAGAAAAGCCTTCATGGAAAGGACATATACATGTACAGAGGAGAAAAGGCATTTTGTAGCACTGAATGTCGGTCAACCCAGATAATTGCCGATGAGAGGAAAGAGCAGTGCAGATCAGAAGCTTTGAGATCTGCAGATGCTTCGAGATCATCGTGTTCGAGAGAGGATCGATCATCTTCTCTACTGGGATTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

298

Amino Acids

32.95

Weight (kDa)

8.66

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 668
AccII CGCG 1 cut(s) 584
AciI CCGC 2 cut(s) 324, 584
AclWI GGATC 1 cut(s) 870
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 665
AfaI GTAC 4 cut(s) 553, 563, 607, 731
AfiI CCNNNNNNNGG 2 cut(s) 188, 792
AflIII ACRYGT 1 cut(s) 726
AgeI ACCGGT 2 cut(s) 420, 608
AgsI TTSAA 4 cut(s) 20, 160, 307, 647
AjiI CACGTC 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 312, 347, 651, 818
AluI AGCT 4 cut(s) 312, 347, 651, 818
Alw26I GTCTC 2 cut(s) 166, 239
AlwI GGATC 1 cut(s) 870
AlwNI CAGNNNCTG 1 cut(s) 684
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 2 cut(s) 347, 684
ApoI RAATTY 1 cut(s) 488
AsiGI ACCGGT 2 cut(s) 420, 608
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 2 cut(s) 268, 423
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 23, 587
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 2 cut(s) 268, 423
BaeI ACNNNNGTAYC 2 cut(s) 589, 622
BalI TGGCCA 1 cut(s) 483
BbvI GCAGC 2 cut(s) 334, 671
BccI CCATC 2 cut(s) 96, 455
BceAI ACGGC 3 cut(s) 412, 532, 588
BcgI CGANNNNNNTGC 2 cut(s) 819, 853
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 166, 239
BfaI CTAG 3 cut(s) 209, 255, 297
BfmI CTRYAG 1 cut(s) 828
BglII AGATCT 1 cut(s) 824
BisI GCNGC 2 cut(s) 348, 685
BlsI GCNGC 2 cut(s) 349, 686
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 268, 423
BmeT110I CYCGRG 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 268, 423
BmiI GGNNCC 2 cut(s) 104, 419
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 267, 823
BmuI ACTGGG 1 cut(s) 890
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 56, 351
BsaWI WCCGGW 2 cut(s) 420, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 792
Bse118I RCCGGY 2 cut(s) 420, 608
Bse1I ACTGG 1 cut(s) 885
BseCI ATCGAT 1 cut(s) 865
BseDI CCNNGG 2 cut(s) 56, 351
BseLI CCNNNNNNNGG 2 cut(s) 188, 792
BseMII CTCAG 1 cut(s) 691
BseNI ACTGG 1 cut(s) 885
BseRI GAGGAG 2 cut(s) 115, 750
BseXI GCAGC 2 cut(s) 334, 671
BsgI GTGCAG 1 cut(s) 826
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 1 cut(s) 483
BshTI ACCGGT 2 cut(s) 420, 608
BshVI ATCGAT 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 4 cut(s) 216, 228, 421, 609
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 188, 792
BsmAI GTCTC 2 cut(s) 166, 239
BsmFI GGGAC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 324, 584
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 690
BspDI ATCGAT 1 cut(s) 865
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 2 cut(s) 104, 419
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 1 cut(s) 870
BspQI GCTCTTC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 166
BsrFI RCCGGY 2 cut(s) 420, 608
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 1 cut(s) 885
BssAI RCCGGY 2 cut(s) 420, 608
BssECI CCNNGG 2 cut(s) 56, 351
BssMI GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
BssNI GRCGYC 1 cut(s) 665
BssT1I CCWWGG 2 cut(s) 56, 351
Bst4CI ACNGT 3 cut(s) 224, 458, 617
Bst6I CTCTTC 2 cut(s) 302, 534
BstACI GRCGYC 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 729
BstBAI YACGTR 1 cut(s) 523
BstDEI CTNAG 3 cut(s) 63, 114, 677
BstDSI CCRYGG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 584
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 7 cut(s) 189, 643, 812, 827, 845, 865, 869
BstMAI GTCTC 2 cut(s) 166, 239
BstMBI GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
BstMWI GCNNNNNNNGC 4 cut(s) 309, 590, 693, 702
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 2 cut(s) 334, 671
BstX2I RGATCY 1 cut(s) 824
BstYI RGATCY 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 865
BsuRI GGCC 1 cut(s) 483
BsuTUI ATCGAT 1 cut(s) 865
BtgI CCRYGG 1 cut(s) 56
BtrI CACGTC 1 cut(s) 377
BtsI GCAGTG 2 cut(s) 598, 809
BtsIMutI CAGTG 4 cut(s) 463, 598, 756, 809
CaiI CAGNNNCTG 1 cut(s) 684
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 2 cut(s) 420, 608
Cfr13I GGNCC 2 cut(s) 268, 423
ClaI ATCGAT 1 cut(s) 865
CpoI CGGWCCG 1 cut(s) 423
Csp6I GTAC 4 cut(s) 552, 562, 606, 730
CspAI ACCGGT 2 cut(s) 420, 608
CspI CGGWCCG 1 cut(s) 423
CviAII CATG 6 cut(s) 9, 57, 71, 595, 710, 727
CviQI GTAC 4 cut(s) 552, 562, 606, 730
DdeI CTNAG 3 cut(s) 63, 114, 677
DpnI GATC 7 cut(s) 188, 642, 811, 826, 844, 864, 868
DpnII GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 302, 534
EarI CTCTTC 2 cut(s) 302, 534
Eco130I CCWWGG 2 cut(s) 56, 351
Eco31I GGTCTC 1 cut(s) 166
Eco32I GATATC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 268, 423
Eco88I CYCGRG 1 cut(s) 445
EcoRV GATATC 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 56, 351
ErhI CCWWGG 2 cut(s) 56, 351
FaeI CATG 6 cut(s) 12, 60, 74, 598, 713, 730
FaqI GGGAC 1 cut(s) 52
FatI CATG 6 cut(s) 8, 56, 70, 594, 709, 726
FauI CCCGC 1 cut(s) 577
Fnu4HI GCNGC 2 cut(s) 348, 685
Fsp4HI GCNGC 2 cut(s) 348, 685
FspBI CTAG 3 cut(s) 209, 255, 297
GlaI GCGC 1 cut(s) 583
GluI GCNGC 2 cut(s) 348, 685
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 1 cut(s) 483
HapII CCGG 4 cut(s) 216, 228, 421, 609
HhaI GCGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 6 cut(s) 12, 60, 74, 598, 713, 730
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 3 cut(s) 433, 526, 885
HpaII CCGG 4 cut(s) 216, 228, 421, 609
HphI GGTGA 2 cut(s) 23, 587
Hpy166II GTNNAC 6 cut(s) 76, 442, 536, 552, 562, 771
Hpy188I TCNGA 8 cut(s) 191, 202, 238, 411, 427, 663, 670, 814
Hpy188III TCNNGA 7 cut(s) 181, 274, 474, 506, 644, 840, 855
Hpy8I GTNNAC 6 cut(s) 76, 442, 536, 552, 562, 771
Hpy99I CGWCG 2 cut(s) 667, 670
HpyAV CCTTC 3 cut(s) 294, 550, 716
HpyCH4III ACNGT 3 cut(s) 224, 458, 617
HpyCH4IV ACGT 4 cut(s) 318, 376, 522, 665
HpyCH4V TGCA 5 cut(s) 280, 598, 696, 807, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 309, 590, 693, 702
HpyF3I CTNAG 3 cut(s) 63, 114, 677
HpySE526I ACGT 4 cut(s) 318, 376, 522, 665
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 6 cut(s) 12, 60, 74, 598, 713, 730
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 8 cut(s) 229, 241, 400, 434, 491, 622, 788, 866
Lsp1109I GCAGC 2 cut(s) 334, 671
LweI GCATC 2 cut(s) 267, 823
MaeI CTAG 3 cut(s) 209, 255, 297
MaeII ACGT 4 cut(s) 318, 376, 522, 665
MaeIII GTNAC 4 cut(s) 523, 575, 611, 632
MalI GATC 7 cut(s) 188, 642, 811, 826, 844, 864, 868
MboI GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
MboII GAAGA 4 cut(s) 319, 509, 521, 864
MflI RGATCY 1 cut(s) 824
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 4 cut(s) 40, 488, 511, 780
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 1 cut(s) 520
MmeI TCCRAC 4 cut(s) 261, 450, 648, 686
MnlI CCTC 9 cut(s) 93, 281, 293, 470, 487, 566, 728, 786, 853
Mox20I TGGCCA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 725
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 4 cut(s) 216, 228, 421, 609
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 120
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 4 cut(s) 309, 590, 693, 702
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 56
NdeII GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
NlaIII CATG 6 cut(s) 12, 60, 74, 598, 713, 730
NlaIV GGNNCC 2 cut(s) 104, 419
NmuCI GTSAC 3 cut(s) 523, 575, 632
NspI RCATGY 1 cut(s) 730
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 2 cut(s) 659, 845
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 433, 885
PinAI ACCGGT 2 cut(s) 420, 608
PkrI GCNGC 2 cut(s) 349, 686
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Ppu21I YACGTR 1 cut(s) 523
PscI ACATGT 1 cut(s) 726
PspN4I GGNNCC 2 cut(s) 104, 419
PspPI GGNCC 2 cut(s) 268, 423
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 684
PsuI RGATCY 1 cut(s) 824
RsaI GTAC 4 cut(s) 553, 563, 607, 731
RsaNI GTAC 4 cut(s) 552, 562, 606, 730
RseI CAYNNNNRTG 1 cut(s) 725
Rsr2I CGGWCCG 1 cut(s) 423
RsrII CGGWCCG 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 302
SatI GCNGC 2 cut(s) 348, 685
Sau3AI GATC 7 cut(s) 186, 640, 809, 824, 842, 862, 866
Sau96I GGNCC 2 cut(s) 268, 423
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 229
SfaNI GCATC 2 cut(s) 267, 823
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 2 cut(s) 268, 423
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 40, 488, 511, 780
SsiI CCGC 2 cut(s) 324, 584
SspI AATATT 1 cut(s) 384
SspMI CTAG 3 cut(s) 209, 255, 297
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 56, 351
TaaI ACNGT 3 cut(s) 224, 458, 617
TaiI ACGT 4 cut(s) 321, 379, 525, 668
TaqI TCGA 3 cut(s) 839, 854, 865
TaqII GACCGA 1 cut(s) 756
TasI AATT 4 cut(s) 40, 488, 511, 780
TatI WGTACW 2 cut(s) 561, 729
TfiI GAWTC 2 cut(s) 433, 885
TscAI CASTG 4 cut(s) 463, 605, 763, 809
TseFI GTSAC 3 cut(s) 523, 575, 632
TseI GCWGC 2 cut(s) 347, 684
Tsp45I GTSAC 3 cut(s) 523, 575, 632
TspDTI ATGAA 1 cut(s) 698
TspGWI ACGGA 3 cut(s) 257, 387, 585
TspRI CASTG 4 cut(s) 463, 605, 763, 809
VpaK11BI GGWCC 2 cut(s) 268, 423
XapI RAATTY 1 cut(s) 488
XceI RCATGY 1 cut(s) 730
XspI CTAG 3 cut(s) 209, 255, 297
ZraI GACGTC 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.