Rh2AG099700

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010874
Physical Location & Seq
Reverse (-)
8433787 .. 8434621
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG099700.1

Sequence Viewer

Length: 708 bp
ATGATAGGAAAGCTGTCAGAAATGTTGGTTTCCGGCAACCGTGCCGGGTTTCTCGACGTGGGGTCGAGCCCTAGAGGGCCACTAGACCTCAAGATGCAATCTCCTTCTCCGAGTCCTAGAGGGTTGAAGTGCTATGATGTTGGTGGTGTTGGCTTGGGCATAGTAGCTGCCTTGGAAAAGTCGAGTCACAATGGACGTGAGATTCTTGCAAAGTATTGTGTTTGTAGTCACAGTTCGAACCGCTCCGACCCGATTCCGGTTAACTCCGGTAAAAAATCCGATACAACGGGTCTTCATGCACTTGAGGAAGAAGACAGTGAGGAGAATTATACCTTTGTGACTTGCCATGGAAGGAACAAGTCCATCACCAAGGTCTACTATGATGGAGTTGTTTGTACTGAGCACCATGTTAGTGTTGAACCCTGTCATGTTAACCATAACCATAAACAAAAACAAGCTCCTGTGTATCCCACGTCGGATTTTCTCAGCTCATGCCATTTGTGCAGCAAAAAGCTTCATGGCAAAGATATTTACATGTACAGGGGAGAGAAGGCATTTTGTAGCACAGAGTGTAGAGCAACACAGATCATGAGCGATGAGCGCAAAGAACAGTGCAGATCAGAAGCTTCAAGAAGATCTGCAGATGTTTCGAGCTCGCCTTATTCGAGAGATCAGATCTTCTTCTCTACTGGTATTCTTGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

235

Amino Acids

25.84

Weight (kDa)

7.98

Isoelectric Point (pI)

64.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 154 - 202 3.5e-23 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 241
AdeI CACNNNGTG 1 cut(s) 570
AfaI GTAC 2 cut(s) 397, 539
AfiI CCNNNNNNNGG 1 cut(s) 256
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 3 cut(s) 127, 419, 630
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 3 cut(s) 58, 197, 474
AluBI AGCT 7 cut(s) 13, 167, 458, 489, 514, 626, 654
AluI AGCT 7 cut(s) 13, 167, 458, 489, 514, 626, 654
Alw21I GWGCWC 2 cut(s) 405, 656
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 167, 504
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 358
AsuII TTCGAA 1 cut(s) 236
BanII GRGCYC 2 cut(s) 71, 656
BbsI GAAGAC 2 cut(s) 284, 318
Bbv12I GWGCWC 2 cut(s) 405, 656
BbvI GCAGC 2 cut(s) 154, 516
BccI CCATC 2 cut(s) 371, 377
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciVI GTATCC 1 cut(s) 477
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 3 cut(s) 72, 83, 117
BfmI CTRYAG 1 cut(s) 639
BfuI GTATCC 1 cut(s) 477
BglII AGATCT 2 cut(s) 635, 675
BisI GCNGC 2 cut(s) 168, 505
BlsI GCNGC 2 cut(s) 169, 506
Bme1390I CCNGG 1 cut(s) 46
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgBI CACGTC 3 cut(s) 58, 197, 474
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 2 cut(s) 284, 318
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 74, 323
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 171, 346, 369
BsaWI WCCGGW 2 cut(s) 256, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 694
BseDI CCNNGG 3 cut(s) 171, 346, 369
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 390, 499
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 154, 516
BsgI GTGCAG 2 cut(s) 523, 634
BshFI GGCC 1 cut(s) 79
BsiHKAI GWGCWC 2 cut(s) 405, 656
BsiSI CCGG 4 cut(s) 33, 45, 257, 267
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 71, 405, 656
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 5 cut(s) 585, 617, 635, 670, 675
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 391, 498
BspHI TCATGA 1 cut(s) 588
BspMAI CTGCAG 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 171, 346, 369
BssMI GATC 5 cut(s) 585, 617, 635, 670, 675
BssT1I CCWWGG 3 cut(s) 171, 346, 369
Bst4CI ACNGT 4 cut(s) 41, 233, 317, 612
BstAUI TGTACA 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 656
BstDEI CTNAG 2 cut(s) 399, 485
BstDSI CCRYGG 1 cut(s) 346
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 5 cut(s) 588, 620, 638, 673, 678
BstMBI GATC 5 cut(s) 585, 617, 635, 670, 675
BstMWI GCNNNNNNNGC 2 cut(s) 501, 600
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 154, 516
BstV2I GAAGAC 2 cut(s) 284, 318
BstX2I RGATCY 2 cut(s) 635, 675
BstYI RGATCY 2 cut(s) 635, 675
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 609
BtrI CACGTC 3 cut(s) 58, 197, 474
BtsIMutI CAGTG 2 cut(s) 322, 617
Cac8I GCNNGC 1 cut(s) 656
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 396, 538
CviAII CATG 8 cut(s) 296, 347, 407, 428, 492, 518, 535, 589
CviQI GTAC 2 cut(s) 396, 538
DdeI CTNAG 2 cut(s) 399, 485
DpnI GATC 5 cut(s) 587, 619, 637, 672, 677
DpnII GATC 5 cut(s) 585, 617, 635, 670, 675
DraIII CACNNNGTG 1 cut(s) 570
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 654
Eco130I CCWWGG 3 cut(s) 171, 346, 369
Eco24I GRGCYC 2 cut(s) 71, 656
Eco53kI GAGCTC 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 654
EcoT14I CCWWGG 3 cut(s) 171, 346, 369
EcoT38I GRGCYC 2 cut(s) 71, 656
ErhI CCWWGG 3 cut(s) 171, 346, 369
FaeI CATG 8 cut(s) 299, 350, 410, 431, 495, 521, 538, 592
FatI CATG 8 cut(s) 295, 346, 406, 427, 491, 517, 534, 588
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 168, 505
FriOI GRGCYC 2 cut(s) 71, 656
Fsp4HI GCNGC 2 cut(s) 168, 505
FspBI CTAG 3 cut(s) 72, 83, 117
GlaI GCGC 1 cut(s) 602
GluI GCNGC 2 cut(s) 168, 505
HaeIII GGCC 1 cut(s) 79
HapII CCGG 4 cut(s) 33, 45, 257, 267
HhaI GCGC 1 cut(s) 603
Hin1II CATG 8 cut(s) 299, 350, 410, 431, 495, 521, 538, 592
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 2 cut(s) 262, 433
HindII GTYRAC 2 cut(s) 262, 433
HindIII AAGCTT 2 cut(s) 512, 624
HinfI GANTC 4 cut(s) 112, 184, 202, 253
HpaI GTTAAC 2 cut(s) 262, 433
HpaII CCGG 4 cut(s) 33, 45, 257, 267
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 3 cut(s) 262, 376, 433
Hpy188I TCNGA 7 cut(s) 19, 111, 247, 280, 478, 622, 675
Hpy188III TCNNGA 5 cut(s) 53, 91, 589, 630, 666
Hpy8I GTNNAC 3 cut(s) 262, 376, 433
Hpy99I CGWCG 2 cut(s) 59, 478
HpyAV CCTTC 3 cut(s) 114, 345, 544
HpyCH4III ACNGT 4 cut(s) 41, 233, 317, 612
HpyCH4IV ACGT 3 cut(s) 57, 196, 473
HpyCH4V TGCA 6 cut(s) 97, 209, 299, 504, 615, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 600
HpyF3I CTNAG 2 cut(s) 399, 485
HpySE526I ACGT 3 cut(s) 57, 196, 473
Hsp92II CATG 8 cut(s) 299, 350, 410, 431, 495, 521, 538, 592
HspAI GCGC 1 cut(s) 601
KspAI GTTAAC 2 cut(s) 262, 433
Kzo9I GATC 5 cut(s) 585, 617, 635, 670, 675
LmnI GCTCC 2 cut(s) 248, 463
LpnPI CCDG 8 cut(s) 46, 58, 270, 280, 436, 474, 526, 675
Lsp1109I GCAGC 2 cut(s) 154, 516
LweI GCATC 1 cut(s) 84
MaeI CTAG 3 cut(s) 72, 83, 117
MaeII ACGT 3 cut(s) 57, 196, 473
MaeIII GTNAC 3 cut(s) 185, 227, 337
MalI GATC 5 cut(s) 587, 619, 637, 672, 677
MbiI CCGCTC 1 cut(s) 243
MboI GATC 5 cut(s) 585, 617, 635, 670, 675
MboII GAAGA 6 cut(s) 284, 320, 323, 645, 670, 673
MflI RGATCY 2 cut(s) 635, 675
MhlI GDGCHC 3 cut(s) 71, 405, 656
MluCI AATT 1 cut(s) 325
MlyI GAGTC 2 cut(s) 121, 193
MmeI TCCRAC 2 cut(s) 270, 456
MnlI CCTC 5 cut(s) 68, 98, 113, 298, 313
MseI TTAA 2 cut(s) 261, 432
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 4 cut(s) 33, 45, 257, 267
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 501, 600
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 346
NdeII GATC 5 cut(s) 585, 617, 635, 670, 675
NlaIII CATG 8 cut(s) 299, 350, 410, 431, 495, 521, 538, 592
NmuCI GTSAC 3 cut(s) 185, 227, 337
NspI RCATGY 1 cut(s) 538
NspV TTCGAA 1 cut(s) 236
PagI TCATGA 1 cut(s) 588
PciI ACATGT 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 662
PfeI GAWTC 2 cut(s) 202, 253
PkrI GCNGC 2 cut(s) 169, 506
PleI GAGTC 2 cut(s) 120, 192
PpsI GAGTC 2 cut(s) 120, 192
PscI ACATGT 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 656
PspPI GGNCC 1 cut(s) 77
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 635, 675
RsaI GTAC 2 cut(s) 397, 539
RsaNI GTAC 2 cut(s) 396, 538
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 261, 432
SatI GCNGC 2 cut(s) 168, 505
Sau3AI GATC 5 cut(s) 585, 617, 635, 670, 675
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 121, 193
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 3 cut(s) 71, 405, 656
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 89, 302
SmoI CTYRAG 2 cut(s) 89, 302
Sse9I AATT 1 cut(s) 325
SsiI CCGC 1 cut(s) 241
SspMI CTAG 3 cut(s) 72, 83, 117
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 3 cut(s) 171, 346, 369
TaaI ACNGT 4 cut(s) 41, 233, 317, 612
TaiI ACGT 3 cut(s) 60, 199, 476
TaqI TCGA 6 cut(s) 54, 65, 182, 236, 650, 665
TasI AATT 1 cut(s) 325
TatI WGTACW 2 cut(s) 395, 537
TfiI GAWTC 2 cut(s) 202, 253
Tru1I TTAA 2 cut(s) 261, 432
Tru9I TTAA 2 cut(s) 261, 432
TscAI CASTG 2 cut(s) 322, 617
TseFI GTSAC 3 cut(s) 185, 227, 337
TseI GCWGC 2 cut(s) 167, 504
Tsp45I GTSAC 3 cut(s) 185, 227, 337
TspDTI ATGAA 2 cut(s) 284, 506
TspRI CASTG 2 cut(s) 322, 617
XceI RCATGY 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 375
XspI CTAG 3 cut(s) 72, 83, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.