FvH4_1g09090

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010874
Physical Location & Seq
Reverse (-)
4815134 .. 4816712
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09090.t1

Sequence Viewer

Length: 750 bp
ATGTTGAAGTTGGGAAAGAAGCCTCTCCCAATGATCGGAAAACTCTCGGAAATGTTGGTTTCCGGCAACCGTGCCGGGTTTCTCGACGTGGGGTCGAGCCCTAGAGGGCCACTAGACCTAAAGATCCAGTCTCCTGCCCCAAGTCCTAGAGTGTTGAAGAACTATGATGATGGTGGTGTTGGCTTGGGAATAGTAGCTGCCTTGGAAAAGTCGAGTCATAATAATGGACGTGCAAAGTATGCTGTTTGTAGTCACAGTTCCAACCGGTCCGACCCAATTCCGGTTAGCTCCGGTCAGAAATCTGATGAGGGTCTTCATGAACTTGAGGAAGAAGATAGTGAGGAGAATTATACCTTTGTGACTTGTCATGGAAGAAACAAGTCCATCACTAAGGTATACTATGATGGAGGTGATTGTAGAAAGATTACCGAGCACCATGTCAGTTCTGCTACATGTCATGTTAACCATAATCTTAACCAGAACCATAAACAAAAACAAGCTCCTGTGTATCCCACATCGGATTTTCTCAGCTCATGCCATTTGTGCAGCAAGAAGCTTGATGGTTTAGATATATACATGTACAGGGGAGACAAGGCATTTTGTAGCACAGAGTGTAGAGCCACACAGATCATGAACGATGAGCGAAAAGAACAGTGCAGATCAGAAGCTTCAAGAAGGTCTGCAGATGTTTCAAGCTCGCCTTATTCGAGAGATCAGATCTTCTTCTGTACTGCTATTCTTGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

250

Amino Acids

27.45

Weight (kDa)

8.0

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 168 - 216 2.9e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 396
AclWI GGATC 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 612
AfaI GTAC 2 cut(s) 581, 730
AfiI CCNNNNNNNGG 2 cut(s) 35, 280
AflIII ACRYGT 2 cut(s) 452, 576
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 4 cut(s) 7, 157, 672, 693
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 2 cut(s) 88, 230
AluBI AGCT 7 cut(s) 197, 288, 500, 531, 556, 668, 696
AluI AGCT 7 cut(s) 197, 288, 500, 531, 556, 668, 696
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 2 cut(s) 135, 582
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 197, 546
AsiGI ACCGGT 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 107, 267
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 184, 558
BccI CCATC 4 cut(s) 164, 392, 398, 554
BciVI GTATCC 1 cut(s) 519
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 135, 582
BfaI CTAG 3 cut(s) 102, 113, 147
BfmI CTRYAG 1 cut(s) 681
BfuI GTATCC 1 cut(s) 519
BglII AGATCT 1 cut(s) 717
BisI GCNGC 2 cut(s) 198, 547
BlsI GCNGC 2 cut(s) 199, 548
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 267
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgBI CACGTC 2 cut(s) 88, 230
BmgT120I GGNCC 2 cut(s) 107, 267
BmrFI CCNGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 3 cut(s) 264, 280, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 280
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 35, 280
BseMII CTCAG 1 cut(s) 541
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 184, 558
BsgI GTGCAG 2 cut(s) 565, 676
BshFI GGCC 1 cut(s) 109
BshTI ACCGGT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 5 cut(s) 63, 75, 265, 281, 291
BslI CCNNNNNNNGG 2 cut(s) 35, 280
BsmAI GTCTC 2 cut(s) 135, 582
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 2 cut(s) 101, 435
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 6 cut(s) 33, 123, 627, 659, 712, 717
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 540
BspHI TCATGA 2 cut(s) 316, 630
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 6 cut(s) 33, 123, 627, 659, 712, 717
BssNAI GTATAC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 71, 257, 654
BstAPI GCANNNNNTGC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 698
BstDEI CTNAG 2 cut(s) 390, 527
BstKTI GATC 6 cut(s) 36, 126, 630, 662, 715, 720
BstMAI GTCTC 2 cut(s) 135, 582
BstMBI GATC 6 cut(s) 33, 123, 627, 659, 712, 717
BstMWI GCNNNNNNNGC 3 cut(s) 239, 543, 740
BstNSI RCATGY 2 cut(s) 456, 580
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 681
BstV1I GCAGC 2 cut(s) 184, 558
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 2 cut(s) 123, 717
BstYI RGATCY 2 cut(s) 123, 717
BstZ17I GTATAC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 1 cut(s) 109
BtrI CACGTC 2 cut(s) 88, 230
BtsIMutI CAGTG 1 cut(s) 659
Cac8I GCNNGC 1 cut(s) 698
CciI TCATGA 2 cut(s) 316, 630
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 107, 267
CpoI CGGWCCG 1 cut(s) 267
Csp6I GTAC 2 cut(s) 580, 729
CspAI ACCGGT 1 cut(s) 264
CspI CGGWCCG 1 cut(s) 267
CviAII CATG 8 cut(s) 317, 368, 437, 453, 458, 534, 577, 631
CviQI GTAC 2 cut(s) 580, 729
DdeI CTNAG 2 cut(s) 390, 527
DpnI GATC 6 cut(s) 35, 125, 629, 661, 714, 719
DpnII GATC 6 cut(s) 33, 123, 627, 659, 712, 717
DraIII CACNNNGTG 1 cut(s) 612
DriI GACNNNNNGTC 1 cut(s) 91
Eam1105I GACNNNNNGTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 8 cut(s) 320, 371, 440, 456, 461, 537, 580, 634
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FatI CATG 8 cut(s) 316, 367, 436, 452, 457, 533, 576, 630
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 198, 547
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 198, 547
FspBI CTAG 3 cut(s) 102, 113, 147
GluI GCNGC 2 cut(s) 198, 547
HaeIII GGCC 1 cut(s) 109
HapII CCGG 5 cut(s) 63, 75, 265, 281, 291
Hin1II CATG 8 cut(s) 320, 371, 440, 456, 461, 537, 580, 634
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 2 cut(s) 554, 666
HinfI GANTC 1 cut(s) 214
HpaI GTTAAC 1 cut(s) 463
HpaII CCGG 5 cut(s) 63, 75, 265, 281, 291
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 397, 463
Hpy188I TCNGA 8 cut(s) 38, 49, 271, 297, 304, 520, 664, 717
Hpy188III TCNNGA 5 cut(s) 83, 317, 631, 672, 708
Hpy8I GTNNAC 2 cut(s) 397, 463
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 669
HpyCH4III ACNGT 3 cut(s) 71, 257, 654
HpyCH4IV ACGT 2 cut(s) 87, 229
HpyCH4V TGCA 4 cut(s) 233, 546, 657, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 543, 740
HpyF3I CTNAG 2 cut(s) 390, 527
HpySE526I ACGT 2 cut(s) 87, 229
Hsp92II CATG 8 cut(s) 320, 371, 440, 456, 461, 537, 580, 634
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 6 cut(s) 33, 123, 627, 659, 712, 717
LmnI GCTCC 2 cut(s) 293, 505
Lsp1109I GCAGC 2 cut(s) 184, 558
MaeI CTAG 3 cut(s) 102, 113, 147
MaeII ACGT 2 cut(s) 87, 229
MaeIII GTNAC 2 cut(s) 251, 358
MalI GATC 6 cut(s) 35, 125, 629, 661, 714, 719
MboI GATC 6 cut(s) 33, 123, 627, 659, 712, 717
MboII GAAGA 7 cut(s) 169, 305, 341, 344, 384, 712, 715
MflI RGATCY 2 cut(s) 123, 717
MhlI GDGCHC 2 cut(s) 101, 435
MluCI AATT 2 cut(s) 276, 346
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 285, 294
MnlI CCTC 6 cut(s) 33, 98, 301, 319, 334, 401
MseI TTAA 2 cut(s) 462, 474
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 5 cut(s) 63, 75, 265, 281, 291
MspR9I CCNGG 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 239, 543, 740
NciI CCSGG 1 cut(s) 76
NdeII GATC 6 cut(s) 33, 123, 627, 659, 712, 717
NlaIII CATG 8 cut(s) 320, 371, 440, 456, 461, 537, 580, 634
NmuCI GTSAC 2 cut(s) 251, 358
NspI RCATGY 2 cut(s) 456, 580
PagI TCATGA 2 cut(s) 316, 630
PciI ACATGT 2 cut(s) 452, 576
PcsI WCGNNNNNNNCGW 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 2 cut(s) 199, 548
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PscI ACATGT 2 cut(s) 452, 576
PspPI GGNCC 2 cut(s) 107, 267
PsrI GAACNNNNNNTAC 2 cut(s) 241, 273
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 2 cut(s) 123, 717
RsaI GTAC 2 cut(s) 581, 730
RsaNI GTAC 2 cut(s) 580, 729
RseI CAYNNNNRTG 1 cut(s) 222
Rsr2I CGGWCCG 1 cut(s) 267
RsrII CGGWCCG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 462, 474
SatI GCNGC 2 cut(s) 198, 547
Sau3AI GATC 6 cut(s) 33, 123, 627, 659, 712, 717
Sau96I GGNCC 2 cut(s) 107, 267
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 2 cut(s) 101, 435
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 276, 346
SspMI CTAG 3 cut(s) 102, 113, 147
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 71, 257, 654
TaiI ACGT 2 cut(s) 90, 232
TaqI TCGA 4 cut(s) 84, 95, 212, 707
TasI AATT 2 cut(s) 276, 346
TatI WGTACW 2 cut(s) 579, 728
Tru1I TTAA 2 cut(s) 462, 474
Tru9I TTAA 2 cut(s) 462, 474
TscAI CASTG 1 cut(s) 659
TseFI GTSAC 2 cut(s) 251, 358
TseI GCWGC 2 cut(s) 197, 546
Tsp45I GTSAC 2 cut(s) 251, 358
TspDTI ATGAA 3 cut(s) 305, 333, 647
TspRI CASTG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 267
XceI RCATGY 2 cut(s) 456, 580
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 3 cut(s) 102, 113, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.