Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Reverse (-)

7084409 .. 7086873

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGACACCAACGGTCGCAACAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATTGTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACAACGACGCTCGAGTCTGAGTTCGATCATAAGGCTCAGATCTCTGAACCGGAGTTAGCTGCGGAGCACGAGGAAGTGAAGGAGAACAAGATTACTCTGCTAGAGGAGCTTCAAGAAAAGACCGAGGAAGATGAGGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACAGCTCTTCTTCCTCTTCGAGCGATGAAGAAGGTGAGGAAAAGAAGGAGAAGAAGAAGAAGATCGTTGAAGGAGAGGAAGATAAGAAAGGACTAGTGGAGAAGATCAAGGAGAAGCTCCCAGGACACCACGACAAGACAGCAGAGGATGATGTACCAGTTTCCACTACCATCCCGGTACCAGTGTCGGAGAGTGTGGTGGAGCATGACCATCCCGAGGAAGAGAAGAAAGGATTAGTTGAGAAGATCAAGGAGAAGCTTCCTGGTCACCACGACGAGAAAGCAGAGGATTCACCAGCTGTCACGTCCACGCCGTTGGTTGTAACGGAGCATCCGGTGGAGCCTACGACGGAGCTTCCAGTGGAACATCCGGAGGAGAAGAAGGGGATTTTGGAAAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTGAAGAGGAAGTGAAGAAAGAAAAAGAGTCTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010286 GO:0016020 GO:0016151 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

265

Amino Acids

29.9

Weight (kDa)

4.75

Isoelectric Point (pI)

65.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	79 - 198	1.5e-18	Dehydrin
Dehydrin	PF00257	204 - 249	5.4e-06	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc65I	GGTACC	1 cut(s)	499
AccB1I	GGYRCC	1 cut(s)	499
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	2 cut(s)	99, 312
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	3 cut(s)	14, 477, 501
AfiI	CCNNNNNNNGG	1 cut(s)	538
AgsI	TTSAA	2 cut(s)	260, 392
AhlI	ACTAGT	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	627
AjnI	CCWGG	3 cut(s)	442, 583, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AluBI	AGCT	9 cut(s)	206, 256, 310, 327, 439, 580, 620, 676, 733
AluI	AGCT	9 cut(s)	206, 256, 310, 327, 439, 580, 620, 676, 733
Alw21I	GWGCWC	2 cut(s)	36, 216
Alw26I	GTCTC	2 cut(s)	32, 140
AlwI	GGATC	2 cut(s)	99, 312
Ama87I	CYCGRG	3 cut(s)	29, 158, 536
Aor13HI	TCCGGA	1 cut(s)	691
ApeKI	GCWGC	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	5 cut(s)	57, 305, 368, 581, 606
AvaI	CYCGRG	3 cut(s)	29, 158, 536
BaeI	ACNNNNGTAYC	2 cut(s)	491, 524
BanI	GGYRCC	1 cut(s)	499
BauI	CACGAG	2 cut(s)	35, 215
Bbv12I	GWGCWC	2 cut(s)	36, 216
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	500, 540
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	3 cut(s)	444, 585, 738
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	2 cut(s)	32, 140
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	3 cut(s)	248, 294, 416
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	4 cut(s)	444, 497, 585, 738
BmeT110I	CYCGRG	3 cut(s)	29, 158, 536
BmgBI	CACGTC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	501, 663
BmrFI	CCNGG	4 cut(s)	444, 497, 585, 738
BmsI	GCATC	1 cut(s)	661
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	270, 442, 537
BsaWI	WCCGGW	3 cut(s)	196, 655, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	3 cut(s)	479, 503, 680
BseAI	TCCGGA	1 cut(s)	691
BseBI	CCWGG	3 cut(s)	444, 585, 738
BseDI	CCNNGG	3 cut(s)	270, 442, 537
BseGI	GGATG	5 cut(s)	475, 492, 532, 652, 688
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	2 cut(s)	156, 197
BseNI	ACTGG	3 cut(s)	479, 503, 680
BseRI	GAGGAG	4 cut(s)	23, 266, 296, 710
BseXI	GCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	36, 216
BsiHKCI	CYCGRG	3 cut(s)	29, 158, 536
BsiSI	CCGG	4 cut(s)	197, 497, 656, 692
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	32, 140
BsoBI	CYCGRG	3 cut(s)	29, 158, 536
Bsp1286I	GDGCHC	2 cut(s)	36, 216
Bsp13I	TCCGGA	1 cut(s)	691
Bsp143I	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	157, 196
BspEI	TCCGGA	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	501, 663
BspPI	GGATC	2 cut(s)	99, 312
BspQI	GCTCTTC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	479, 503, 680
BssECI	CCNNGG	3 cut(s)	270, 442, 537
BssMI	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
BssSI	CACGAG	2 cut(s)	35, 215
Bst2BI	CACGAG	2 cut(s)	35, 215
Bst2UI	CCWGG	3 cut(s)	444, 585, 738
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	5 cut(s)	120, 334, 343, 537, 756
BstDEI	CTNAG	3 cut(s)	6, 165, 183
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	5 cut(s)	475, 492, 532, 652, 688
BstKTI	GATC	8 cut(s)	94, 175, 189, 320, 387, 429, 570, 723
BstMAI	GTCTC	2 cut(s)	32, 140
BstMBI	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	3 cut(s)	444, 585, 738
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	4 cut(s)	442, 495, 583, 736
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	475, 492, 532, 652, 688
BtsIMutI	CAGTG	3 cut(s)	510, 687, 756
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	13, 476, 500
CviAII	CATG	2 cut(s)	527, 746
CviQI	GTAC	3 cut(s)	13, 476, 500
DdeI	CTNAG	3 cut(s)	6, 165, 183
DpnI	GATC	8 cut(s)	93, 174, 188, 319, 386, 428, 569, 722
DpnII	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	5 cut(s)	120, 334, 343, 537, 756
EarI	CTCTTC	5 cut(s)	120, 334, 343, 537, 756
Eco57I	CTGAAG	1 cut(s)	780
Eco88I	CYCGRG	3 cut(s)	29, 158, 536
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	3 cut(s)	442, 583, 736
FaeI	CATG	2 cut(s)	530, 749
FaiI	YATR	3 cut(s)	177, 528, 747
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FatI	CATG	2 cut(s)	526, 745
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	5 cut(s)	479, 482, 519, 639, 675
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	248, 294, 416
GluI	GCNGC	1 cut(s)	207
HapII	CCGG	4 cut(s)	197, 497, 656, 692
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	530, 749
HindIII	AAGCTT	3 cut(s)	308, 578, 731
HinfI	GANTC	4 cut(s)	62, 161, 611, 785
HpaII	CCGG	4 cut(s)	197, 497, 656, 692
HphI	GGTGA	5 cut(s)	57, 305, 368, 581, 606
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	5 cut(s)	166, 186, 193, 511, 790
Hpy188III	TCNNGA	5 cut(s)	29, 143, 260, 536, 692
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	4 cut(s)	76, 157, 599, 673
HpyAV	CCTTC	6 cut(s)	115, 220, 347, 361, 386, 697
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	24, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	3 cut(s)	6, 165, 183
HpySE526I	ACGT	2 cut(s)	24, 626
Hsp92II	CATG	2 cut(s)	530, 749
Kpn2I	TCCGGA	1 cut(s)	691
KpnI	GGTACC	1 cut(s)	503
Kzo9I	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	7 cut(s)	211, 253, 444, 523, 649, 661, 673
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	3 cut(s)	248, 294, 416
MaeII	ACGT	2 cut(s)	24, 626
MaeIII	GTNAC	4 cut(s)	85, 587, 622, 643
MalI	GATC	8 cut(s)	93, 174, 188, 319, 386, 428, 569, 722
MboI	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	36, 216
MlyI	GAGTC	2 cut(s)	170, 794
MmeI	TCCRAC	2 cut(s)	345, 489
MroI	TCCGGA	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	1 cut(s)	796
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	4 cut(s)	197, 497, 656, 692
MspR9I	CCNGG	4 cut(s)	444, 497, 585, 738
MvaI	CCWGG	3 cut(s)	444, 585, 738
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
NlaIII	CATG	2 cut(s)	530, 749
NlaIV	GGNNCC	2 cut(s)	501, 663
NmuCI	GTSAC	2 cut(s)	587, 622
PaeR7I	CTCGAG	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	62, 611
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	169, 793
PpsI	GAGTC	2 cut(s)	169, 793
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	442, 583, 736
PspEI	GGTNACC	1 cut(s)	587
PspGI	CCWGG	3 cut(s)	442, 583, 736
PspN4I	GGNNCC	2 cut(s)	501, 663
PspXI	VCTCGAGB	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	3 cut(s)	14, 477, 501
RsaNI	GTAC	3 cut(s)	13, 476, 500
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	796
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	8 cut(s)	91, 172, 186, 317, 384, 426, 567, 720
SchI	GAGTC	2 cut(s)	170, 794
ScrFI	CCNGG	4 cut(s)	444, 497, 585, 738
SduI	GDGCHC	2 cut(s)	36, 216
SfaNI	GCATC	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	141, 158
SmoI	CTYRAG	2 cut(s)	141, 158
SpeI	ACTAGT	1 cut(s)	415
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	3 cut(s)	248, 294, 416
StyD4I	CCNGG	4 cut(s)	442, 495, 583, 736
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	27, 629
TaqI	TCGA	4 cut(s)	159, 171, 303, 341
TaqII	GACCGA	1 cut(s)	284
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	62, 611
Tru1I	TTAA	1 cut(s)	796
Tru9I	TTAA	1 cut(s)	796
TscAI	CASTG	3 cut(s)	510, 687, 763
TseFI	GTSAC	2 cut(s)	587, 622
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	2 cut(s)	587, 622
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	3 cut(s)	104, 662, 686
TspRI	CASTG	3 cut(s)	510, 687, 763
XhoI	CTCGAG	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	3 cut(s)	248, 294, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.