Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Forward (+)

417838 .. 419481

Gene Structure 1644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1004500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGGAGGAGTACAACAAGAAGAGCGATGAACACGAGTACGAGAGGAAGACTGGGGATTACGAGGAGGGATCGGGTGCAGGCGAGACCAAGGATCGTGGGTTGTTTGATTTCTTGGGGAAGAAAGAGGAGGAGAAGCCAACTCCTTATCAGCAAGGGGATCAGGTGAACGTCGCCGAGTTTGATGAGAAAGTCAAGATCTCCGATCATCACGATCAGCATGCATCATCATACAACAAAGTAGAAGAGGAGGAAGACAAGGAGAAGAAGCACGAGACTCTCCTGCAGAAGCTTCACCGATCTGAAAGCAGCTCTAGCTCTTCAAGTGATGAGGAGGAAGATGAAGAGAAGAAGAAGAAGCGGAAAGAAAAGAAGGGATTGACGGATAAGATCAAGGAGAAGATCTCCGGTGATGAGCACAAGGAAGAAGGCTATCACAAGGAGGAGGACACGGCTGTCCCGGTGGAGAAGGTGTACGAGGAGGAACATCATCATCCAGCTCCAGCTCCAGCTCCGGTTGTTCATTACCACGAAGAGCCAACCGACTCTCCAACTGAGGAAAAGAAGGGTTTCCTCGAGAAGATCAAGGAAAAGCTACCTGGCCACAAGAAGACTGAGGAGGTTCCAGTTGGTGCTGCTTCGCACGAACAGCACAGTGACGACAAACATGCGGCGGAGCCACCGGTAGCAGCCTCTTATGAAGCTGGAGAAGAGCCCAAGGAAAAGAAGGGTATTTTGGAGAAGATCAAGGAAAAGCTTCCAGGGTACCATTCCAAGACCGAGGAAGATCACAAGGACATCAAGGAGAAAGAGAAGGATACTCCTTCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

278

Amino Acids

31.8

Weight (kDa)

5.2

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	76 - 202	7.4e-19	Dehydrin
Dehydrin	PF00257	214 - 257	3.4e-07	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	765
AciI	CCGC	4 cut(s)	5, 361, 671, 674
AclWI	GGATC	3 cut(s)	79, 102, 168
AcoI	YGGCCR	1 cut(s)	601
AfaI	GTAC	4 cut(s)	14, 41, 476, 767
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	1 cut(s)	324
AjnI	CCWGG	2 cut(s)	598, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	9 cut(s)	292, 312, 318, 500, 506, 512, 595, 704, 757
AluI	AGCT	9 cut(s)	292, 312, 318, 500, 506, 512, 595, 704, 757
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	80, 269
AlwI	GGATC	3 cut(s)	79, 102, 168
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	3 cut(s)	309, 635, 689
AsiGI	ACCGGT	1 cut(s)	682
Asp700I	GAANNNNTTC	2 cut(s)	569, 756
Asp718I	GGTACC	1 cut(s)	765
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	178, 287, 422
AvaI	CYCGRG	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	717
BauI	CACGAG	2 cut(s)	35, 272
BbsI	GAAGAC	3 cut(s)	56, 261, 617
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	321, 622, 701
BceAI	ACGGC	1 cut(s)	468
BcgI	CGANNNNNNTGC	4 cut(s)	203, 237, 650, 684
BciT130I	CCWGG	2 cut(s)	600, 762
BciVI	GTATCC	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	80, 269
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	811
BglII	AGATCT	2 cut(s)	198, 402
BisI	GCNGC	4 cut(s)	310, 636, 672, 690
BlsI	GCNGC	4 cut(s)	311, 637, 673, 691
Bme1390I	CCNGG	3 cut(s)	461, 600, 762
BmeT110I	CYCGRG	1 cut(s)	575
BmiI	GGNNCC	3 cut(s)	624, 678, 767
BmrFI	CCNGG	3 cut(s)	461, 600, 762
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	3 cut(s)	56, 261, 617
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	3 cut(s)	486, 492, 726
BpuMI	CCSGG	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	90, 717, 761, 780
BsaWI	WCCGGW	3 cut(s)	407, 514, 682
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 532, 562
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	58, 626
BseBI	CCWGG	2 cut(s)	600, 762
BseDI	CCNNGG	4 cut(s)	90, 717, 761, 780
BseGI	GGATG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	546, 606
BseNI	ACTGG	2 cut(s)	58, 626
BseRI	GAGGAG	9 cut(s)	23, 80, 143, 146, 263, 347, 458, 494, 632
BseXI	GCAGC	3 cut(s)	321, 622, 701
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	603
BshNI	GGYRCC	1 cut(s)	765
BshTI	ACCGGT	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	408, 461, 515, 683
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	80, 269
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	420, 717
BspACI	CCGC	4 cut(s)	5, 361, 671, 674
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	547, 607
BspLI	GGNNCC	3 cut(s)	624, 678, 767
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	3 cut(s)	79, 102, 168
BspQI	GCTCTTC	4 cut(s)	17, 325, 528, 705
BspT107I	GGYRCC	1 cut(s)	765
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	58, 626
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	4 cut(s)	90, 717, 761, 780
BssSI	CACGAG	2 cut(s)	35, 272
BssT1I	CCWWGG	2 cut(s)	90, 717
Bst2BI	CACGAG	2 cut(s)	35, 272
Bst2UI	CCWGG	2 cut(s)	600, 762
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	6 cut(s)	17, 240, 325, 339, 528, 705
BstC8I	GCNNGC	2 cut(s)	82, 222
BstDEI	CTNAG	2 cut(s)	555, 615
BstF5I	GGATG	1 cut(s)	493
BstMAI	GTCTC	2 cut(s)	80, 269
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 649
BstNI	CCWGG	2 cut(s)	600, 762
BstNSI	RCATGY	2 cut(s)	224, 671
BstSCI	CCNGG	3 cut(s)	459, 598, 760
BstSFI	CTRYAG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	321, 622, 701
BstV2I	GAAGAC	3 cut(s)	56, 261, 617
BstX2I	RGATCY	2 cut(s)	198, 402
BstYI	RGATCY	2 cut(s)	198, 402
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	1 cut(s)	603
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	82, 222
Cfr10I	RCCGGY	1 cut(s)	682
Csp6I	GTAC	4 cut(s)	13, 40, 475, 766
CspAI	ACCGGT	1 cut(s)	682
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	2 cut(s)	221, 668
CviQI	GTAC	4 cut(s)	13, 40, 475, 766
DdeI	CTNAG	2 cut(s)	555, 615
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	6 cut(s)	17, 240, 325, 339, 528, 705
EarI	CTCTTC	6 cut(s)	17, 240, 325, 339, 528, 705
EciI	GGCGGA	2 cut(s)	20, 689
Eco130I	CCWWGG	2 cut(s)	90, 717
Eco24I	GRGCYC	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	598, 760
EcoT14I	CCWWGG	2 cut(s)	90, 717
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	2 cut(s)	90, 717
FaeI	CATG	2 cut(s)	224, 671
FaiI	YATR	4 cut(s)	222, 232, 669, 699
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	2 cut(s)	220, 667
Fnu4HI	GCNGC	4 cut(s)	310, 636, 672, 690
FokI	GGATG	1 cut(s)	480
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	4 cut(s)	310, 636, 672, 690
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	4 cut(s)	310, 636, 672, 690
GsuI	CTGGAG	3 cut(s)	486, 492, 726
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	4 cut(s)	408, 461, 515, 683
Hin1II	CATG	2 cut(s)	224, 671
HindIII	AAGCTT	2 cut(s)	290, 755
HinfI	GANTC	2 cut(s)	277, 545
HpaII	CCGG	4 cut(s)	408, 461, 515, 683
HphI	GGTGA	3 cut(s)	178, 287, 422
Hpy166II	GTNNAC	2 cut(s)	169, 475
Hpy188I	TCNGA	2 cut(s)	205, 304
Hpy188III	TCNNGA	3 cut(s)	196, 212, 577
Hpy8I	GTNNAC	2 cut(s)	169, 475
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	7 cut(s)	367, 422, 463, 559, 721, 808, 834
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	80, 224, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 649
HpyF3I	CTNAG	2 cut(s)	555, 615
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	224, 671
KpnI	GGTACC	1 cut(s)	769
LguI	GCTCTTC	4 cut(s)	17, 325, 528, 705
LmnI	GCTCC	4 cut(s)	505, 511, 517, 676
Lsp1109I	GCAGC	3 cut(s)	321, 622, 701
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	656
MflI	RGATCY	2 cut(s)	198, 402
MhlI	GDGCHC	2 cut(s)	420, 717
MlsI	TGGCCA	1 cut(s)	603
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	271, 539
MmeI	TCCRAC	1 cut(s)	575
Mox20I	TGGCCA	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	2 cut(s)	569, 756
MscI	TGGCCA	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	4 cut(s)	408, 461, 515, 683
MspR9I	CCNGG	3 cut(s)	461, 600, 762
MvaI	CCWGG	2 cut(s)	600, 762
MwoI	GCNNNNNNNGC	2 cut(s)	315, 649
NciI	CCSGG	1 cut(s)	461
NlaIII	CATG	2 cut(s)	224, 671
NlaIV	GGNNCC	3 cut(s)	624, 678, 767
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	656
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	2 cut(s)	224, 671
PaeI	GCATGC	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	575
PciSI	GCTCTTC	4 cut(s)	17, 325, 528, 705
PdmI	GAANNNNTTC	2 cut(s)	569, 756
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	4 cut(s)	311, 637, 673, 691
PleI	GAGTC	2 cut(s)	271, 539
PpsI	GAGTC	2 cut(s)	271, 539
Psp6I	CCWGG	2 cut(s)	598, 760
PspGI	CCWGG	2 cut(s)	598, 760
PspN4I	GGNNCC	3 cut(s)	624, 678, 767
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	198, 402
RsaI	GTAC	4 cut(s)	14, 41, 476, 767
RsaNI	GTAC	4 cut(s)	13, 40, 475, 766
SapI	GCTCTTC	4 cut(s)	17, 325, 528, 705
SatI	GCNGC	4 cut(s)	310, 636, 672, 690
SchI	GAGTC	2 cut(s)	271, 539
ScrFI	CCNGG	3 cut(s)	461, 600, 762
SduI	GDGCHC	2 cut(s)	420, 717
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	224
SsiI	CCGC	4 cut(s)	5, 361, 671, 674
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	459, 598, 760
StyI	CCWWGG	2 cut(s)	90, 717
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	576
TaqII	GACCGA	1 cut(s)	794
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	674
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	3 cut(s)	309, 635, 689
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	4 cut(s)	45, 357, 512, 714
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	661
XceI	RCATGY	2 cut(s)	224, 671
XhoI	CTCGAG	1 cut(s)	575
XmnI	GAANNNNTTC	2 cut(s)	569, 756
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.